Ss1.1-Pig4-TMW8043K11.3
|
AGGAACGTCCCGGTGACAGGCTCTATCAGCCACGTCCTGGTGCAGCTCCCCCACGTCTTC
CAGAGGATGGAGGCCCAAGACCTCGCTTCCGTGATTGATGCCAGGTTTGCCTTTTTCGTG
AACAAGGTCCTGCCTCAGTACCGGGATGCGGTCATGTCTCACACGCTTCTCTACGTCCCC
TCCTACTTCGACTTTGTGCGCCTCCGAAATTACTTCAAGAAGGAGGAGCTGAGCTTCACT
CACATCTGCGAGTACACCCAGCGGCCCGCCGTCTCCAGGGCCAGACACTTCTTTCGTCAA
GGAGAGAAGCAGTTCCTGCTGCTCACAGAGCGCTTCCACTTCTACAAGAGATACACAATC
AAAGGCATCAGGAACCTGATTTTCTATGAACTGCCAACGTATCCCCACTTCTACAGTGAG
GTCTGTAACATGCTCAGAGCCACCACCAGCGGGGAGGAAGCCGCCTGGACCTGCACTGTC
CTCTACTCCAAGTACGACGCCCAGAGGCTGGCTGCTGTGGTTGGCGTGGAGCGGGCTGCG
CAGATGCTGCGGTCCGAGAAGAGCGTCCACCTCTTCATTACTGGGGAGAGATGAGAGTTG
GGCAGCGGGCGGCCGGGCGGCCGTGATACATGATGCTGGATTCTGTGCCCCTCGGGCCCG
ATGCTGGTCACTTATCCCAAGGGCTGCTCTGAGGAAGGAGCAGCAGGCAGCGTCCTACAG
ACACTTCTTCCTTTTCAGATGATAGAGCCCTGAAACGTTCAGTGTCAGCCACATTTTGGT
TAAAGCGCATCTTTCAGAGGTCAGGAAAGAGCTGATGGGACTCCGAGAAGTTAGTAGAGG
AATCTTCCACTTGTGAATCATTTTGTAAGCCATACATTCTTGTACCGTGATTTCACTTCT
AATTTATTACACACTTGGTGAATT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGGAACGTCCCGGTGACAGGCTCTATCAGCCACGTCCTGGTGCAGCTCCCCCACGTCTTC
CAGAGGATGGAGGCCCAAGACCTCGCTTCCGTGATTGATGCCAGGTTTGCCTTTTTCGTG
AACAAGGTCCTGCCTCAGTACCGGGATGCGGTCATGTCTCACACGCTTCTCTACGTCCCC
TCCTACTTCGACTTTGTGCGCCTCCGAAATTACTTCAAGAAGGAGGAGCTGAGCTTCACT
CACATCTGCGAGTACACCCAGCGGCCCGCCGTCTCCAGGGCCAGACACTTCTTTCGTCAA
GGAGAGAAGCAGTTCCTGCTGCTCACAGAGCGCTTCCACTTCTACAAGAGATACACAATC
AAAGGCATCAGGAACCTGATTTTCTATGAACTGCCAACGTATCCCCACTTCTACAGTGAG
GTCTGTAACATGCTCAGAGCCACCACCAGCGGGGAGGAAGCCGCCTGGACCTGCACTGTC
CTCTACTCCAAGTACGACGCCCAGAGGCTGGCTGCTGTGGTTGGCGTGGAGCGGGCTGCG
CAGATGCTGCGGTCCGAGAAGAGCGTCCACCTCTTCATTACTGGGGAGAGATGAGAGTTG
GGCAGCGGGCGGCCGGGCGGCCGTGATACATGATGCTGGATTCTGTGCCCCTCGGGCCCG
ATGCTGGTCACTTATCCCAAGGGCTGCTCTGAGGAAGGAGCAGCAGGCAGCGTCCTACAG
ACACTTCTTCCTTTTCAGATGATAGAGCCCTGAAACGTTCAGTGTCAGCCACATTTTGGT
TAAAGCGCATCTTTCAGAGGTCAGGAAAGAGCTGATGGGACTCCGAGAAGTTAGTAGAGG
AATCTTCCACTTGTGAATCATTTTGTAAGCCATACATTCTTGTACCGTGATTTCACTTCT
AATTTATTACACACTTGGTGAATT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
102-350, gnl|bosTau2|chr16 (50879561-50879809) |
|
102-350, gnl|canFam2|chr7 (11462290-11462453) |
|
102-350, gnl|danRer3|chr13 (32971961-32971798) |
|
102-350, gnl|dasNov1|scaffold_498 (181110-181273) |
|
102-350, gnl|fr1|chrUn (174017410-174017573) |
|
102-350, gnl|galGal2|chr3 (19182101-19181938) |
|
102-350, gnl|hg17|chr1 (206405189-206405352) |
|
102-350, gnl|Hg17|chr1 (206405188-206405436) |
|
102-350, gnl|loxAfr1|scaffold_14212 (60386-60549) |
|
102-350, gnl|mm7|chr1 (192666625-192666462) |
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102-350, gnl|Mm7|chr1 (192666624-192666376) |
|
102-350, gnl|monDom2|scaffold_13 (12922371-12922534) |
|
102-350, gnl|oryCun1|scaffold_146479 (7005-7168) |
|
102-350, gnl|panTro1|chr1 (190020858-190021021) |
|
102-350, gnl|rheMac2|chr1 (160549936-160549773) |
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102-350, gnl|rn3|chr13 (109140739-109140576) |
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102-350, gnl|tetNig1|chr10 (1130482-1130319) |
|
102-350, gnl|xenTro1|scaffold_68 (2068011-2068174) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
102-350, gnl|bosTau2|chr16 (50879561-50879809) |
|
102-350, gnl|canFam2|chr7 (11462290-11462453) |
|
102-350, gnl|danRer3|chr13 (32971961-32971798) |
|
102-350, gnl|dasNov1|scaffold_498 (181110-181273) |
|
102-350, gnl|fr1|chrUn (174017410-174017573) |
|
102-350, gnl|galGal2|chr3 (19182101-19181938) |
|
102-350, gnl|hg17|chr1 (206405189-206405352) |
|
102-350, gnl|Hg17|chr1 (206405188-206405436) |
|
102-350, gnl|loxAfr1|scaffold_14212 (60386-60549) |
|
102-350, gnl|mm7|chr1 (192666625-192666462) |
|
102-350, gnl|Mm7|chr1 (192666624-192666376) |
|
102-350, gnl|monDom2|scaffold_13 (12922371-12922534) |
|
102-350, gnl|oryCun1|scaffold_146479 (7005-7168) |
|
102-350, gnl|panTro1|chr1 (190020858-190021021) |
|
102-350, gnl|rheMac2|chr1 (160549936-160549773) |
|
102-350, gnl|rn3|chr13 (109140739-109140576) |
|
102-350, gnl|tetNig1|chr10 (1130482-1130319) |
|
102-350, gnl|xenTro1|scaffold_68 (2068011-2068174) |
|
pla (0.267344) |
|
ill (0.175593) |
|
duo (0.172801) |
|
cli (0.152812) |
|
spl (0.143184) |
|
cst (0.140036) |
|
cty (0.10408) |
|
pla (0.267344) |
|
ill (0.175593) |
|
duo (0.172801) |
|
cli (0.152812) |
|
spl (0.143184) |
|
cst (0.140036) |
|
cty (0.10408) |
