Ss1.1-Pig4-TMW8043K13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAGAACTTCCAAAATAGTAAATCAAGTTAATGAAATTAGCTTAAGAATGAAATTAAAC CTAAAAGTAGTTATGTTTTTTGGCAGTGTTGACCAATAAAAGTATCTAGATAAGGAAATT TGTAGCATCAACTAGAATAATCTGCATTTGATAGCCTTTATTATAAGTAAGCTGTTTCCA CTGCTTGATATAACTGAGTTTTATTTCTCTCTTTTAGATGAAATTGTTGATACTTTAGGT GAAGGAGCTTTTGGAAAAGTCGTGGAATGCATTGATCATAAAGCGGGAGGTAGACATGTA GCAGTAAAAATAGTTAAAAATGTGGATAGATACTGTGAAGCTGCTCGATCAGAAATACAA GTTCTGGAACACTTAAATACAACAGACCCTAGCAGTACATTCCGCTGTGTTCAGATGTTG GAGTGGTTTGAGCATCATGGTCACATTTGCATTGTGTTTGAATTACTAGGACTTAGTACA TATGACTTTATTAAGGAAAATGGTTTTCTGCCATTTCGACTGGATCATATCAGGAAGATG GCATATCAGATATGCAAGTCTGTGAATTTTCTGCACAGCAATAAGTTGACTCACACAGAC TTAAAGCCCGAAAACATCTTATTTGTACAGTCTGACTACACAGAAGTTTATAATCCCAAA ATGAAACGTGATGAACGTACCTTAATTAATCCAGATATTAAAGTTGTAGACTTTGGAAGT GCAACATATGATGATGAACATCATAGTACATTGGTATCTACAAGACATTACAGGGCACCT GAAGTTATTTTAGCCCTCGGATGGTCCCAGCCATGTGATGTCTGGAGTATAGGATGTATT CTTATTGAATATTACCTTGGGTTTACTGTATTTCCAACACATGATAGTAAGGAACACTTG GCAATGATGGAAAGGATTCTTGGACCTTTACCAAAACATATGGTACAGAAAACAAGGAAA CGTAAATATTTCCATCATGATCGATTAGACTGGGATGAACACAGCTCTGCTGGCAGATAT GTTTCAAGGCGCTGTAAACCTCTGAAGGAATTTATGCTTTCTCAGGATGCTGAACATGAG CTTCTCTTTGACCTCATTCAGAAAATGTTGGAGTATGATCCAGCTAAAAGGATTACTCTT AAAGAAGCCTTAAAGCATCCTTTCTTTTACCCCTTGAAAAAACTATAAATCTGTAATTGT ACAGCTCTCTTAAATCATATGGACTGCATCAGTCTAATTTTTAAATGTTAAGTTATTTTG TACAGCTTTTGTAAATTTCTTACATTTTTTGTATTGTGTTTATTTTGTTTGGATAACTCA ATTTAAGTAGCTAAAGTAAGGAACATTTTATCAGTGATTACTGTATAAAGTTTATTCAGA ATAAATTTTTTGTGTTTATGAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAGAACTTCCAAAATAGTAAATCAAGTTAATGAAATTAGCTTAAGAATGAAATTAAAC CTAAAAGTAGTTATGTTTTTTGGCAGTGTTGACCAATAAAAGTATCTAGATAAGGAAATT TGTAGCATCAACTAGAATAATCTGCATTTGATAGCCTTTATTATAAGTAAGCTGTTTCCA CTGCTTGATATAACTGAGTTTTATTTCTCTCTTTTAGATGAAATTGTTGATACTTTAGGT GAAGGAGCTTTTGGAAAAGTCGTGGAATGCATTGATCATAAAGCGGGAGGTAGACATGTA GCAGTAAAAATAGTTAAAAATGTGGATAGATACTGTGAAGCTGCTCGATCAGAAATACAA GTTCTGGAACACTTAAATACAACAGACCCTAGCAGTACATTCCGCTGTGTTCAGATGTTG GAGTGGTTTGAGCATCATGGTCACATTTGCATTGTGTTTGAATTACTAGGACTTAGTACA TATGACTTTATTAAGGAAAATGGTTTTCTGCCATTTCGACTGGATCATATCAGGAAGATG GCATATCAGATATGCAAGTCTGTGAATTTTCTGCACAGCAATAAGTTGACTCACACAGAC TTAAAGCCCGAAAACATCTTATTTGTACAGTCTGACTACACAGAAGTTTATAATCCCAAA ATGAAACGTGATGAACGTACCTTAATTAATCCAGATATTAAAGTTGTAGACTTTGGAAGT GCAACATATGATGATGAACATCATAGTACATTGGTATCTACAAGACATTACAGGGCACCT GAAGTTATTTTAGCCCTCGGATGGTCCCAGCCATGTGATGTCTGGAGTATAGGATGTATT CTTATTGAATATTACCTTGGGTTTACTGTATTTCCAACACATGATAGTAAGGAACACTTG GCAATGATGGAAAGGATTCTTGGACCTTTACCAAAACATATGGTACAGAAAACAAGGAAA CGTAAATATTTCCATCATGATCGATTAGACTGGGATGAACACAGCTCTGCTGGCAGATAT GTTTCAAGGCGCTGTAAACCTCTGAAGGAATTTATGCTTTCTCAGGATGCTGAACATGAG CTTCTCTTTGACCTCATTCAGAAAATGTTGGAGTATGATCCAGCTAAAAGGATTACTCTT AAAGAAGCCTTAAAGCATCCTTTCTTTTACCCCTTGAAAAAACTATAAATCTGTAATTGT ACAGCTCTCTTAAATCATATGGACTGCATCAGTCTAATTTTTAAATGTTAAGTTATTTTG TACAGCTTTTGTAAATTTCTTACATTTTTTGTATTGTGTTTATTTTGTTTGGATAACTCA ATTTAAGTAGCTAAAGTAAGGAACATTTTATCAGTGATTACTGTATAAAGTTTATTCAGA ATAAATTTTTTGTGTTTATGAAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 3-285, gnl|bosTau2|chr2 (50971253-50971541) | |
| 3-285, gnl|canFam2|chr37 (13060700-13061049) | |
| 3-285, gnl|danRer3|chr6 (31162724-31163005) | |
| 3-285, gnl|dasNov1|scaffold_37798 (1447-1116) | |
| 3-285, gnl|echTel1|scaffold_274417 (6342-6685) | |
| 3-285, gnl|fr1|chrUn (192685129-192684864) | |
| 3-285, gnl|galGal2|chr7 (12198130-12198488) | |
| 3-285, gnl|hg17|chr2 (201549899-201550219) | |
| 3-285, gnl|Hg17|chr2 (201550172-201549908) | |
| 3-285, gnl|loxAfr1|scaffold_11493 (2540-2887) | |
| 3-285, gnl|mm7|chr1 (58670746-58671072) | |
| 3-285, gnl|Mm7|chr1 (58671033-58670755) | |
| 3-285, gnl|monDom2|scaffold_64 (9064100-9064426) | |
| 3-285, gnl|oryCun1|scaffold_176986 (82804-83129) | |
| 3-285, gnl|panTro1|chr13 (91529550-91529874) | |
| 3-285, gnl|rheMac2|chr12 (64612944-64613264) | |
| 3-285, gnl|rn3|chr9 (57224859-57225184) | |
| 3-285, gnl|tetNig1|chr1 (831587-831347) | |
| 3-285, gnl|xenTro1|scaffold_15 (290153-289894) | |
| 402-577, gnl|bosTau2|chr16 (14593111-14593286) | |
| 402-577, gnl|canFam2|chr11 (5981268-5981011) | |
| 402-577, gnl|danRer3|chr6 (31162106-31162361) | |
| 402-577, gnl|dasNov1|scaffold_37798 (6941-6682) | |
| 402-577, gnl|echTel1|scaffold_296405 (89227-88889) | |
| 402-577, gnl|fr1|chrUn (192685559-192685334) | |
| 402-577, gnl|galGal2|chr13 (12929223-12929476) | |
| 402-577, gnl|hg17|chr5 (177973058-177973317) | |
| 402-577, gnl|Hg17|chr5 (177973246-177973071) | |
| 402-577, gnl|loxAfr1|scaffold_12296 (22406-22667) | |
| 402-577, gnl|mm7|chr11 (51232356-51232102) | |
| 402-577, gnl|Mm7|chr11 (51232169-51232342) | |
| 402-577, gnl|monDom2|scaffold_6 (16236314-16236053) | |
| 402-577, gnl|oryCun1|scaffold_176986 (79808-80066) | |
| 402-577, gnl|panTro1|chr4_random (24313183-24313442) | |
| 402-577, gnl|rheMac2|chr6 (175196298-175196557) | |
| 402-577, gnl|rn3|chr10 (36797396-36797147) | |
| 402-577, gnl|tetNig1|chr1 (832044-831816) | |
| 402-577, gnl|xenTro1|scaffold_15 (294151-293903) | |
| 663-791, gnl|bosTau2|chr16 (14593821-14593949) | |
| 663-791, gnl|Hg17|chr5 (177972153-177972025) | |
| 663-791, gnl|Mm7|chr11 (51232874-51233002) | |
| 850-957, gnl|bosTau2|chr2 (50974269-50974374) | |
| 850-957, gnl|canFam2|chr37 (13054915-13054991) | |
| 850-957, gnl|danRer3|chr6 (31161098-31161174) | |
| 850-957, gnl|dasNov1|scaffold_37798 (12548-12471) | |
| 850-957, gnl|echTel1|scaffold_274417 (2905-2981) | |
| 850-957, gnl|fr1|chrUn (192686249-192686173) | |
| 850-957, gnl|galGal2|chr13 (12913827-12913903) | |
| 850-957, gnl|hg17|chr2 (201544839-201544915) | |
| 850-957, gnl|Hg17|chr2 (201544940-201544844) | |
| 850-957, gnl|loxAfr1|scaffold_111861 (3399-3475) | |
| 850-957, gnl|mm7|chr1 (58664030-58664106) | |
| 850-957, gnl|Mm7|chr1 (58664132-58664035) | |
| 850-957, gnl|monDom2|scaffold_64 (9058491-9058567) | |
| 850-957, gnl|oryCun1|scaffold_212053 (210323-210399) | |
| 850-957, gnl|panTro1|chr13 (91524476-91524552) | |
| 850-957, gnl|rheMac2|chr12 (64607274-64607350) | |
| 850-957, gnl|rn3|chr9 (57218728-57218804) | |
| 850-957, gnl|tetNig1|chr1 (832755-832679) | |
| 850-957, gnl|xenTro1|scaffold_15 (296688-296612) | |
| 1046-1181, gnl|bosTau2|chr16 (14600666-14600801) | |
| 1046-1181, gnl|Hg17|chr5 (177963366-177963231) | |
| 1046-1181, gnl|Mm7|chr11 (51238032-51238167) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-285, gnl|bosTau2|chr2 (50971253-50971541) | |
| 3-285, gnl|canFam2|chr37 (13060700-13061049) | |
| 3-285, gnl|danRer3|chr6 (31162724-31163005) | |
| 3-285, gnl|dasNov1|scaffold_37798 (1447-1116) | |
| 3-285, gnl|echTel1|scaffold_274417 (6342-6685) | |
| 3-285, gnl|fr1|chrUn (192685129-192684864) | |
| 3-285, gnl|galGal2|chr7 (12198130-12198488) | |
| 3-285, gnl|hg17|chr2 (201549899-201550219) | |
| 3-285, gnl|Hg17|chr2 (201550172-201549908) | |
| 3-285, gnl|loxAfr1|scaffold_11493 (2540-2887) | |
| 3-285, gnl|mm7|chr1 (58670746-58671072) | |
| 3-285, gnl|Mm7|chr1 (58671033-58670755) | |
| 3-285, gnl|monDom2|scaffold_64 (9064100-9064426) | |
| 3-285, gnl|oryCun1|scaffold_176986 (82804-83129) | |
| 3-285, gnl|panTro1|chr13 (91529550-91529874) | |
| 3-285, gnl|rheMac2|chr12 (64612944-64613264) | |
| 3-285, gnl|rn3|chr9 (57224859-57225184) | |
| 3-285, gnl|tetNig1|chr1 (831587-831347) | |
| 3-285, gnl|xenTro1|scaffold_15 (290153-289894) | |
| 402-577, gnl|bosTau2|chr16 (14593111-14593286) | |
| 402-577, gnl|canFam2|chr11 (5981268-5981011) | |
| 402-577, gnl|danRer3|chr6 (31162106-31162361) | |
| 402-577, gnl|dasNov1|scaffold_37798 (6941-6682) | |
| 402-577, gnl|echTel1|scaffold_296405 (89227-88889) | |
| 402-577, gnl|fr1|chrUn (192685559-192685334) | |
| 402-577, gnl|galGal2|chr13 (12929223-12929476) | |
| 402-577, gnl|hg17|chr5 (177973058-177973317) | |
| 402-577, gnl|Hg17|chr5 (177973246-177973071) | |
| 402-577, gnl|loxAfr1|scaffold_12296 (22406-22667) | |
| 402-577, gnl|mm7|chr11 (51232356-51232102) | |
| 402-577, gnl|Mm7|chr11 (51232169-51232342) | |
| 402-577, gnl|monDom2|scaffold_6 (16236314-16236053) | |
| 402-577, gnl|oryCun1|scaffold_176986 (79808-80066) | |
| 402-577, gnl|panTro1|chr4_random (24313183-24313442) | |
| 402-577, gnl|rheMac2|chr6 (175196298-175196557) | |
| 402-577, gnl|rn3|chr10 (36797396-36797147) | |
| 402-577, gnl|tetNig1|chr1 (832044-831816) | |
| 402-577, gnl|xenTro1|scaffold_15 (294151-293903) | |
| 663-791, gnl|bosTau2|chr16 (14593821-14593949) | |
| 663-791, gnl|Hg17|chr5 (177972153-177972025) | |
| 663-791, gnl|Mm7|chr11 (51232874-51233002) | |
| 850-957, gnl|bosTau2|chr2 (50974269-50974374) | |
| 850-957, gnl|canFam2|chr37 (13054915-13054991) | |
| 850-957, gnl|danRer3|chr6 (31161098-31161174) | |
| 850-957, gnl|dasNov1|scaffold_37798 (12548-12471) | |
| 850-957, gnl|echTel1|scaffold_274417 (2905-2981) | |
| 850-957, gnl|fr1|chrUn (192686249-192686173) | |
| 850-957, gnl|galGal2|chr13 (12913827-12913903) | |
| 850-957, gnl|hg17|chr2 (201544839-201544915) | |
| 850-957, gnl|Hg17|chr2 (201544940-201544844) | |
| 850-957, gnl|loxAfr1|scaffold_111861 (3399-3475) | |
| 850-957, gnl|mm7|chr1 (58664030-58664106) | |
| 850-957, gnl|Mm7|chr1 (58664132-58664035) | |
| 850-957, gnl|monDom2|scaffold_64 (9058491-9058567) | |
| 850-957, gnl|oryCun1|scaffold_212053 (210323-210399) | |
| 850-957, gnl|panTro1|chr13 (91524476-91524552) | |
| 850-957, gnl|rheMac2|chr12 (64607274-64607350) | |
| 850-957, gnl|rn3|chr9 (57218728-57218804) | |
| 850-957, gnl|tetNig1|chr1 (832755-832679) | |
| 850-957, gnl|xenTro1|scaffold_15 (296688-296612) | |
| 1046-1181, gnl|bosTau2|chr16 (14600666-14600801) | |
| 1046-1181, gnl|Hg17|chr5 (177963366-177963231) | |
| 1046-1181, gnl|Mm7|chr11 (51238032-51238167) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| liv (1.17027) | |
| thg (0.887536) | |
| lyg (0.798616) | |
| tra (0.61546) | |
| sin (0.524843) | |
| kid (0.518941) | |
| sug (0.509165) | |
| lin (0.436808) | |
| spl (0.429553) | |
| aor (0.390549) | |
| ova (0.387397) | |
| gul (0.355177) | |
| med (0.348756) | |
| sme (0.305437) | |
| ski (0.29347) | |
| ret (0.257467) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| cbl (0.229595) | |
| spc (0.226732) | |
| mas (0.210305) | |
| nep (0.183925) | |
| sag (0.182715) | |
| fty (0.17584) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| bla (0.124347) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (1.17027) | |
| thg (0.887536) | |
| lyg (0.798616) | |
| tra (0.61546) | |
| sin (0.524843) | |
| kid (0.518941) | |
| sug (0.509165) | |
| lin (0.436808) | |
| spl (0.429553) | |
| aor (0.390549) | |
| ova (0.387397) | |
| gul (0.355177) | |
| med (0.348756) | |
| sme (0.305437) | |
| ski (0.29347) | |
| ret (0.257467) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| cbl (0.229595) | |
| spc (0.226732) | |
| mas (0.210305) | |
| nep (0.183925) | |
| sag (0.182715) | |
| fty (0.17584) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| bla (0.124347) | |
| eru (0.120048) | |
| cty (0.10408) |