Non-Coding RNA Search

Ss1.1-Pig4-TMW8043K20.3

Sequence:


               
               ATATTAAAGTGCAGAAAGCCAGAGGCTTAGAGCCAAAGACTTGTTTCAGAAAGATGAGAG
AGGATTATTTGGAAACCTGTGGGTACAAAGAAGAGGTTGATTCTAGACCCAGGTGCAGAA
TGTTTGATCAGAGGCTCCCTTATGAAAGGGTCCAGACCTACCCGAGATCATGTAGGGTTT
CACAGACAGTGGAAAAGCAGTTACCTCACTGGCTGCCAGCTCGTGACAATAGGCTGAGAC
TAGGCTCCCTGAGCTACCCTCAGTTCCCCAGGGACTGCTTCTTGGGAGAACCAGTACCCC
TGAACCTTAGTCAGCACGAGTATAATCATAGCTCCTACAGTGTGGAATCTGGAGTCCACA
AGCCCCTCTCCTCAGAGAACAGTACCCGTGCCCATCACGCTAGTGCCCATCACATCCATC
AGAGGAGGAAGAGGCACCTCGAGGAAGGCAGAGAAAAACCAGAGGAGGAGCGGCCCAGGC
ATAAGAGGAAAAAAGCTTGTGAGGAAGTAGATTTAGACAAACACAAGCGCATCCAGAGAA
ACAGAACAGAGGTGGAAACAGTCGGAGTCAGCACAGAAAAGCCTACCAACCGAAAGGAGA
AAAAAAGCCGAGATGCAGCCTCTAAGAAAGAGGAACGTAAGCGTAGAAAAGAGAAAAAGG
AACAAGGCGAAGAAAGGACAGACGAGGAGATGCTTTGGGACCAGTCTATCCTTGGGTTTT
GAAGCTCTTGGGTTGGTTCTCCCGAGGTTAGGTTGAAAGATTAGTTGAGGAGCCTGGTTT
TATGATGTTCGTGCTCATATCGCTCTTCCCACGTGAACAGGTGCAAAGGTTAAGTGGACA
GAAAACATTTAGTGTGTTTGCTCTCCAACATGGAAATTGCTTTTCCTCATTTTCTAAAAT
CATTACTGTATTTTTCTCATACACAGTGTAATTTCCCTTAACAAGAGTAGCTCTGCCTTT
ATTCATCAAGTTGCTATGATGGTGGAAGTATTTTTCCCTTGGGAGGTCATTTATTTTAAA
TTGGAGGATCAAAAGGCTTTGCAGAATCTACTTCTTGATTGGGTTTTAGTTTGGAGTGGC
GTATTTTTATATTCATTAGTTTTCTCTATGAACCAATTTAGATTGATTTTTCTTTCCCTT
GTTAGATCTCATTTACAGTATATTTTCTAAGATGAAAAGTGGAAAATGAAATACCTTATA
ATAAGTTTATGTTATATACAGTTTTAAATGTTTCAAAGAGTCTTGATATAAAATCAGTTT
ATATTCTGGAAATGTTTATAATATAATAAAATGTTCTAATTTCTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATTAAAGTGCAGAAAGCCAGAGGCTTAGAGCCAAAGACTTGTTTCAGAAAGATGAGAG
AGGATTATTTGGAAACCTGTGGGTACAAAGAAGAGGTTGATTCTAGACCCAGGTGCAGAA
TGTTTGATCAGAGGCTCCCTTATGAAAGGGTCCAGACCTACCCGAGATCATGTAGGGTTT
CACAGACAGTGGAAAAGCAGTTACCTCACTGGCTGCCAGCTCGTGACAATAGGCTGAGAC
TAGGCTCCCTGAGCTACCCTCAGTTCCCCAGGGACTGCTTCTTGGGAGAACCAGTACCCC
TGAACCTTAGTCAGCACGAGTATAATCATAGCTCCTACAGTGTGGAATCTGGAGTCCACA
AGCCCCTCTCCTCAGAGAACAGTACCCGTGCCCATCACGCTAGTGCCCATCACATCCATC
AGAGGAGGAAGAGGCACCTCGAGGAAGGCAGAGAAAAACCAGAGGAGGAGCGGCCCAGGC
ATAAGAGGAAAAAAGCTTGTGAGGAAGTAGATTTAGACAAACACAAGCGCATCCAGAGAA
ACAGAACAGAGGTGGAAACAGTCGGAGTCAGCACAGAAAAGCCTACCAACCGAAAGGAGA
AAAAAAGCCGAGATGCAGCCTCTAAGAAAGAGGAACGTAAGCGTAGAAAAGAGAAAAAGG
AACAAGGCGAAGAAAGGACAGACGAGGAGATGCTTTGGGACCAGTCTATCCTTGGGTTTT
GAAGCTCTTGGGTTGGTTCTCCCGAGGTTAGGTTGAAAGATTAGTTGAGGAGCCTGGTTT
TATGATGTTCGTGCTCATATCGCTCTTCCCACGTGAACAGGTGCAAAGGTTAAGTGGACA
GAAAACATTTAGTGTGTTTGCTCTCCAACATGGAAATTGCTTTTCCTCATTTTCTAAAAT
CATTACTGTATTTTTCTCATACACAGTGTAATTTCCCTTAACAAGAGTAGCTCTGCCTTT
ATTCATCAAGTTGCTATGATGGTGGAAGTATTTTTCCCTTGGGAGGTCATTTATTTTAAA
TTGGAGGATCAAAAGGCTTTGCAGAATCTACTTCTTGATTGGGTTTTAGTTTGGAGTGGC
GTATTTTTATATTCATTAGTTTTCTCTATGAACCAATTTAGATTGATTTTTCTTTCCCTT
GTTAGATCTCATTTACAGTATATTTTCTAAGATGAAAAGTGGAAAATGAAATACCTTATA
ATAAGTTTATGTTATATACAGTTTTAAATGTTTCAAAGAGTCTTGATATAAAATCAGTTT
ATATTCTGGAAATGTTTATAATATAATAAAATGTTCTAATTTCTAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NPI7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NPI7_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.963675
               

               
               240-359, - strand, RNAz p=0.603586

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.963675
               

               
               240-359, - strand, RNAz p=0.603586

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1305, gnl|bosTau2|chr11 (35627573-35626295)
               

               
               1-1305, gnl|Hg17|chr2 (88167292-88165986)
               

               
               1-1305, gnl|Mm7|chr6 (71302037-71303316)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1305, gnl|bosTau2|chr11 (35627573-35626295)
               

               
               1-1305, gnl|Hg17|chr2 (88167292-88165986)
               

               
               1-1305, gnl|Mm7|chr6 (71302037-71303316)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               rec (0.519211)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               amn (0.417711)
               

               
               cki (0.330469)
               

               
               sug (0.254582)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               spc (0.113366)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               amn (0.417711)
               

               
               cki (0.330469)
               

               
               sug (0.254582)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               spc (0.113366)

	1-119, - strand, RNAz p=0.963675
	240-359, - strand, RNAz p=0.603586

	1-1305, gnl\|bosTau2\|chr11 (35627573-35626295)
	1-1305, gnl\|Hg17\|chr2 (88167292-88165986)
	1-1305, gnl\|Mm7\|chr6 (71302037-71303316)

	rec (0.519211)
	ova (0.516529)
	pro (0.512033)
	amn (0.417711)
	cki (0.330469)
	sug (0.254582)
	tes (0.207814)
	cmu (0.186393)
	sag (0.182715)
	gul (0.177588)
	cje (0.165235)
	fat (0.147427)
	nca (0.136874)
	kid (0.129735)
	spc (0.113366)