Ss1.1-Pig4-TMW8043K23.3
|
GAGGCGGCGGTGGCGGCGGCGGTGGCGGAGGAGGCGGCGGCGGTGGTGGCGGAACTGCCA
TGCGCATCCTGGGCGGGGTTATTAGCGCCATCAGTGAGGCGGCTGCGCAGTACAACCCCG
AGCCCCCGCCCCCTCGCACCCATTATTCCAACATTGAGGCCAATGAGAGTGAGGAGGTCC
GGCAGTTTCGGAGGCTCTTTGCCCAGCTGGCTGGAGATGACATGGAGGTCAGTGCCACGG
AACTCATGAACATTCTCAACAAGGTCGTGACCCGACACCCTGATCTGAAGACTGATGGTT
TTGGCATTGACACATGTCGCAGCATGGTGGCTGTGATGGATAGTGACACAACCGGCAAGC
TGGGCTTCGAGGAATTCAAGTACTTGTGGAACAACATCAAAAAGTGGCAGGCCATATACA
AACAGTTCGATGTTGACCGTTCAGGGACCATTGGCAGCAGTGAACTCCCAGGGGCCTTTG
AAGCCGCAGGATTCCACCTGAATGAGCATCTCTACAGCATGATCATCCGACGCTACTCAG
ATGAGGGAGGGAACATGGATTTTGACAACTTTATCAGCTGCCTGGTCAGACTGGATGCCA
TGTTCCGTGCCTTCAAATCTCTTGACAAAGATGGTACTGGACAAATCCAGGTGAACATCC
AGGAGTGGCTGCAGCTGACCATGTATTCCTGAACGGGAGCCCCAGACCTGCCCCCTCGTC
GCCTCGCTGAGGGAGTCACCTTGGACTCTTCGGTCTCTCCCAGGGCTGATCTCATCCGCA
GCCACATCTTCGTGGGTTCTGTGGACCCACACTCCTTCCTGTTCTCCCAGCCGTTGGCAC
CCAGATTCTCAGTCAACAGCCAGAGCCCAACATGCTTCAGCACGCCCTGCCCCGACAGTC
ACCCCACACCCGTGCACCCATCTCATACCCGCTCCATTAGCCCTCTCTTGCACCAGTGCC
AAGCCCAACATTTTTGTTGCTTCCACACCCCAAGGGCCTTTCTCTCTGTTCTGGGAGGAT
CAGTCCAGTCCCTTCACTCCCTGGCACACCCATTCAGTTACCACCCAGGCAGCCCAACTC
CAGGCCATGACAGGCCCACGTGCCCCAGTGCCTTTGTCTGTATTCTGCCCTCAGCCTGCC
AGGCCCAGGAGGAAATAAATGCACCTACTTGCTGCTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGGCGGCGGTGGCGGCGGCGGTGGCGGAGGAGGCGGCGGCGGTGGTGGCGGAACTGCCA
TGCGCATCCTGGGCGGGGTTATTAGCGCCATCAGTGAGGCGGCTGCGCAGTACAACCCCG
AGCCCCCGCCCCCTCGCACCCATTATTCCAACATTGAGGCCAATGAGAGTGAGGAGGTCC
GGCAGTTTCGGAGGCTCTTTGCCCAGCTGGCTGGAGATGACATGGAGGTCAGTGCCACGG
AACTCATGAACATTCTCAACAAGGTCGTGACCCGACACCCTGATCTGAAGACTGATGGTT
TTGGCATTGACACATGTCGCAGCATGGTGGCTGTGATGGATAGTGACACAACCGGCAAGC
TGGGCTTCGAGGAATTCAAGTACTTGTGGAACAACATCAAAAAGTGGCAGGCCATATACA
AACAGTTCGATGTTGACCGTTCAGGGACCATTGGCAGCAGTGAACTCCCAGGGGCCTTTG
AAGCCGCAGGATTCCACCTGAATGAGCATCTCTACAGCATGATCATCCGACGCTACTCAG
ATGAGGGAGGGAACATGGATTTTGACAACTTTATCAGCTGCCTGGTCAGACTGGATGCCA
TGTTCCGTGCCTTCAAATCTCTTGACAAAGATGGTACTGGACAAATCCAGGTGAACATCC
AGGAGTGGCTGCAGCTGACCATGTATTCCTGAACGGGAGCCCCAGACCTGCCCCCTCGTC
GCCTCGCTGAGGGAGTCACCTTGGACTCTTCGGTCTCTCCCAGGGCTGATCTCATCCGCA
GCCACATCTTCGTGGGTTCTGTGGACCCACACTCCTTCCTGTTCTCCCAGCCGTTGGCAC
CCAGATTCTCAGTCAACAGCCAGAGCCCAACATGCTTCAGCACGCCCTGCCCCGACAGTC
ACCCCACACCCGTGCACCCATCTCATACCCGCTCCATTAGCCCTCTCTTGCACCAGTGCC
AAGCCCAACATTTTTGTTGCTTCCACACCCCAAGGGCCTTTCTCTCTGTTCTGGGAGGAT
CAGTCCAGTCCCTTCACTCCCTGGCACACCCATTCAGTTACCACCCAGGCAGCCCAACTC
CAGGCCATGACAGGCCCACGTGCCCCAGTGCCTTTGTCTGTATTCTGCCCTCAGCCTGCC
AGGCCCAGGAGGAAATAAATGCACCTACTTGCTGCTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
487-608, gnl|bosTau2|chr18 (41921849-41921970) |
|
487-608, gnl|canFam2|chr1 (119462144-119462028) |
|
487-608, gnl|dasNov1|scaffold_54459 (10293-10412) |
|
487-608, gnl|echTel1|scaffold_285519 (7563-7679) |
|
487-608, gnl|galGal2|chr11 (3535207-3535091) |
|
487-608, gnl|hg17|chr1 (89572046-89572162) |
|
487-608, gnl|Hg17|chr19 (41328935-41329056) |
|
487-608, gnl|loxAfr1|scaffold_7688 (41294-41179) |
|
487-608, gnl|mm7|chr7 (27131721-27131605) |
|
487-608, gnl|Mm7|chr7 (27131724-27131603) |
|
487-608, gnl|monDom2|scaffold_14 (9393241-9393125) |
|
487-608, gnl|oryCun1|scaffold_171528 (12487-12603) |
|
487-608, gnl|panTro1|chr1 (88341247-88341363) |
|
487-608, gnl|rheMac2|chr1 (92107322-92107436) |
|
487-608, gnl|rn3|chr5 (52403235-52403357) |
|
487-608, gnl|tetNig1|chrUn_random (135415776-135415660) |
|
487-608, gnl|xenTro1|scaffold_1087 (236221-236337) |
| |
|
664-1176, gnl|bosTau2|chr18 (41923693-41924198) |
|
664-1176, gnl|Hg17|chr19 (41332553-41333090) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
487-608, gnl|bosTau2|chr18 (41921849-41921970) |
|
487-608, gnl|canFam2|chr1 (119462144-119462028) |
|
487-608, gnl|dasNov1|scaffold_54459 (10293-10412) |
|
487-608, gnl|echTel1|scaffold_285519 (7563-7679) |
|
487-608, gnl|galGal2|chr11 (3535207-3535091) |
|
487-608, gnl|hg17|chr1 (89572046-89572162) |
|
487-608, gnl|Hg17|chr19 (41328935-41329056) |
|
487-608, gnl|loxAfr1|scaffold_7688 (41294-41179) |
|
487-608, gnl|mm7|chr7 (27131721-27131605) |
|
487-608, gnl|Mm7|chr7 (27131724-27131603) |
|
487-608, gnl|monDom2|scaffold_14 (9393241-9393125) |
|
487-608, gnl|oryCun1|scaffold_171528 (12487-12603) |
|
487-608, gnl|panTro1|chr1 (88341247-88341363) |
|
487-608, gnl|rheMac2|chr1 (92107322-92107436) |
|
487-608, gnl|rn3|chr5 (52403235-52403357) |
|
487-608, gnl|tetNig1|chrUn_random (135415776-135415660) |
|
487-608, gnl|xenTro1|scaffold_1087 (236221-236337) |
| |
|
664-1176, gnl|bosTau2|chr18 (41923693-41924198) |
|
664-1176, gnl|Hg17|chr19 (41332553-41333090) |
|
cov (1.58583) |
|
col (1.36505) |
|
cag (0.907167) |
|
fcc (0.791139) |
|
ton (0.702001) |
|
cli (0.611247) |
|
jej (0.593531) |
|
nlu (0.575043) |
|
nbm (0.496623) |
|
nco (0.485201) |
|
hyp (0.42851) |
|
amn (0.417711) |
|
eep (0.367692) |
|
ebs (0.354904) |
|
fbs (0.350693) |
|
med (0.348756) |
|
jca (0.34188) |
|
mcp (0.341297) |
|
nje (0.33184) |
|
csp (0.322373) |
|
eli (0.303628) |
|
eje (0.296501) |
|
nca (0.273748) |
|
fce (0.271592) |
|
ese (0.253004) |
|
cly (0.241284) |
|
ece (0.229305) |
|
mas (0.210305) |
|
tes (0.207814) |
|
fli (0.202881) |
|
fat (0.147427) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
ssp (0.13552) |
|
eru (0.120048) |
|
clu (0.119646) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
cov (1.58583) |
|
col (1.36505) |
|
cag (0.907167) |
|
fcc (0.791139) |
|
ton (0.702001) |
|
cli (0.611247) |
|
jej (0.593531) |
|
nlu (0.575043) |
|
nbm (0.496623) |
|
nco (0.485201) |
|
hyp (0.42851) |
|
amn (0.417711) |
|
eep (0.367692) |
|
ebs (0.354904) |
|
fbs (0.350693) |
|
med (0.348756) |
|
jca (0.34188) |
|
mcp (0.341297) |
|
nje (0.33184) |
|
csp (0.322373) |
|
eli (0.303628) |
|
eje (0.296501) |
|
nca (0.273748) |
|
fce (0.271592) |
|
ese (0.253004) |
|
cly (0.241284) |
|
ece (0.229305) |
|
mas (0.210305) |
|
tes (0.207814) |
|
fli (0.202881) |
|
fat (0.147427) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
ssp (0.13552) |
|
eru (0.120048) |
|
clu (0.119646) |
|
ecc (0.115035) |
|
cty (0.10408) |
