Ss1.1-Pig4-TMW8043L07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAAACCTCACATTAGCTGTGTCAAAAAATGTGGCTAAGACCATCCAGTTGTATGGCATA AAATCGGAGCAGCTGCTCTCCACACAAGGAGATGCAAGTCAGGTGATTGGGCCTCTTACA GAAGGGCAGAGAAGAAACGTGGCAGTAGTGAATTCACTATATAAGTTGCACCAGTCGGTA ACAAAGGTGGTTTCCAGTCAGAGTTCATTCCCACCAGCAGCTGAGCAAACTATCATTTCA GCCCTAAAGGCGATCCATGTGCTAATGGGAAACGCTGTGCAGCCCTTACTGACATCAGTG GGAGATGCTATAGAGGCCATCATCATCACTATGCACCAAGAAGATTTTTCTGGATCATCC CCCGGCCCAGAAAAGCCTGATGTTCCCTGTTCTCTCTACATGAAGGAGCTTCAGGGTTTC ATTGCCAGAGTTATGAGTGACTACTTTAAACACTTTGAGTGCTCGGATTTCGTCTTTGAC AACACTGAAGCCATTGCCCAAAGAGCCATTGAACTTTTCATCCGCAATGCCAGTCTCATA AGACCTCTTGGTGAAGGTGGGAAAATGCGACTTGCTGCTGATTTTGCACAGATGGAGTTG GCTGTGGGTCCGTTCTGCAGAAGAGTATCTGATTTAGGAAAGTCCTATCGAATGCTCAGG TCATTCAGACCACTGCTCTTCCAGACCAGTGAACACATGGCCAGCAGTCCTGCAGTGGGG GATGTTATTCCATTCAGCATCATTATTCAGTTTTTGTTCACAAGAGCACCTGCTGAGCTG AAATCTCCCTTCCAGAGGGCGGAGTGGTCCCACGCACGCTTCTCCCAGTGGCTGGATGAT CATCCCTCTGAAAAGGACAGGCTCCTCCTCATCAGAGGCGCGCTGGAAGCTTATGTTCAA TCAGTAAGAAGCAGAGAAGGCAAAGAATTTGCACCAGTATATCCCATAATGGTTCAACTG CTCCAGAAAGCTATGTCTACGCTTCAGTAATAATGTGCAATATTTCTTAATCTCCATTTT GGGTTAACCCATCCAAGGTTGGCAACTAAAGACATGCTCTAAAAGACAGCTACTACCTAC TATTTTGAAAACATAGTTGATTTTTCTGTATTGCCTGTTGGTCTTTTCCTGTTTACCTCT TAATCCCTTCTGCCTTCCACAGCATAAAATGTCAAAATAGATTCATTCATTTTCAAACTC TATGGATCTGATTTTTCCAGAAACTCTTCTCTCCTTCCAGGTTTTTTTGAGGCTACCTAC AATGTCTTTCCCATCACACAGCAGATGCCCCACTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAAACCTCACATTAGCTGTGTCAAAAAATGTGGCTAAGACCATCCAGTTGTATGGCATA AAATCGGAGCAGCTGCTCTCCACACAAGGAGATGCAAGTCAGGTGATTGGGCCTCTTACA GAAGGGCAGAGAAGAAACGTGGCAGTAGTGAATTCACTATATAAGTTGCACCAGTCGGTA ACAAAGGTGGTTTCCAGTCAGAGTTCATTCCCACCAGCAGCTGAGCAAACTATCATTTCA GCCCTAAAGGCGATCCATGTGCTAATGGGAAACGCTGTGCAGCCCTTACTGACATCAGTG GGAGATGCTATAGAGGCCATCATCATCACTATGCACCAAGAAGATTTTTCTGGATCATCC CCCGGCCCAGAAAAGCCTGATGTTCCCTGTTCTCTCTACATGAAGGAGCTTCAGGGTTTC ATTGCCAGAGTTATGAGTGACTACTTTAAACACTTTGAGTGCTCGGATTTCGTCTTTGAC AACACTGAAGCCATTGCCCAAAGAGCCATTGAACTTTTCATCCGCAATGCCAGTCTCATA AGACCTCTTGGTGAAGGTGGGAAAATGCGACTTGCTGCTGATTTTGCACAGATGGAGTTG GCTGTGGGTCCGTTCTGCAGAAGAGTATCTGATTTAGGAAAGTCCTATCGAATGCTCAGG TCATTCAGACCACTGCTCTTCCAGACCAGTGAACACATGGCCAGCAGTCCTGCAGTGGGG GATGTTATTCCATTCAGCATCATTATTCAGTTTTTGTTCACAAGAGCACCTGCTGAGCTG AAATCTCCCTTCCAGAGGGCGGAGTGGTCCCACGCACGCTTCTCCCAGTGGCTGGATGAT CATCCCTCTGAAAAGGACAGGCTCCTCCTCATCAGAGGCGCGCTGGAAGCTTATGTTCAA TCAGTAAGAAGCAGAGAAGGCAAAGAATTTGCACCAGTATATCCCATAATGGTTCAACTG CTCCAGAAAGCTATGTCTACGCTTCAGTAATAATGTGCAATATTTCTTAATCTCCATTTT GGGTTAACCCATCCAAGGTTGGCAACTAAAGACATGCTCTAAAAGACAGCTACTACCTAC TATTTTGAAAACATAGTTGATTTTTCTGTATTGCCTGTTGGTCTTTTCCTGTTTACCTCT TAATCCCTTCTGCCTTCCACAGCATAAAATGTCAAAATAGATTCATTCATTTTCAAACTC TATGGATCTGATTTTTCCAGAAACTCTTCTCTCCTTCCAGGTTTTTTTGAGGCTACCTAC AATGTCTTTCCCATCACACAGCAGATGCCCCACTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 346-464, - strand, RNAz p=0.65574 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 346-464, - strand, RNAz p=0.65574 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 75-188, gnl|bosTau2|chr4 (20553273-20553160) | |
| 75-188, gnl|canFam2|chr18 (16287295-16287138) | |
| 75-188, gnl|danRer3|chrUn (145778075-145777940) | |
| 75-188, gnl|echTel1|scaffold_308312 (39310-39181) | |
| 75-188, gnl|fr1|chrUn (302327793-302327673) | |
| 75-188, gnl|galGal2|chr1 (9107091-9106965) | |
| 75-188, gnl|hg17|chr7 (106492665-106492822) | |
| 75-188, gnl|Hg17|chr7 (106492780-106492667) | |
| 75-188, gnl|loxAfr1|scaffold_52760 (11413-11553) | |
| 75-188, gnl|mm7|chr12 (29708771-29708615) | |
| 75-188, gnl|Mm7|chr12 (29708654-29708767) | |
| 75-188, gnl|monDom2|scaffold_22 (45452474-45452306) | |
| 75-188, gnl|panTro1|chr6 (108403577-108403734) | |
| 75-188, gnl|rheMac2|chr3 (144680563-144680720) | |
| 75-188, gnl|rn3|chr6 (49833458-49833301) | |
| 75-188, gnl|tetNig1|chrUn_random (48536089-48536209) | |
| 75-188, gnl|xenTro1|scaffold_452 (311932-312084) | |
| 346-591, gnl|bosTau2|chr4 (20540908-20540663) | |
| 346-591, gnl|Hg17|chr7 (106471091-106470846) | |
| 346-591, gnl|Mm7|chr12 (29733202-29733447) | |
| 661-795, gnl|bosTau2|chr4 (20523888-20523754) | |
| 661-795, gnl|canFam2|chr18 (16316491-16316329) | |
| 661-795, gnl|dasNov1|scaffold_2558 (30133-29975) | |
| 661-795, gnl|echTel1|scaffold_295478 (27391-27550) | |
| 661-795, gnl|fr1|chrUn (302328998-302328867) | |
| 661-795, gnl|galGal2|chr1 (9121667-9121534) | |
| 661-795, gnl|hg17|chr7 (106445490-106445650) | |
| 661-795, gnl|Hg17|chr7 (106445628-106445495) | |
| 661-795, gnl|loxAfr1|scaffold_29476 (27832-27993) | |
| 661-795, gnl|mm7|chr12 (29759024-29758866) | |
| 661-795, gnl|Mm7|chr12 (29758886-29759017) | |
| 661-795, gnl|monDom2|scaffold_22 (45487817-45487655) | |
| 661-795, gnl|oryCun1|scaffold_211657 (8902-8750) | |
| 661-795, gnl|panTro1|chr6 (108355404-108355565) | |
| 661-795, gnl|rheMac2|chr3 (144633275-144633433) | |
| 661-795, gnl|rn3|chr6 (50198286-50198128) | |
| 661-795, gnl|tetNig1|chrUn_random (48534955-48535086) | |
| 661-795, gnl|xenTro1|scaffold_452 (275402-275534) | |
| 872-1281, gnl|bosTau2|chr4 (20513839-20513421) | |
| 872-1281, gnl|Hg17|chr7 (106438030-106437601) | |
| 872-1281, gnl|Mm7|chr12 (29764862-29765208) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-188, gnl|bosTau2|chr4 (20553273-20553160) | |
| 75-188, gnl|canFam2|chr18 (16287295-16287138) | |
| 75-188, gnl|danRer3|chrUn (145778075-145777940) | |
| 75-188, gnl|echTel1|scaffold_308312 (39310-39181) | |
| 75-188, gnl|fr1|chrUn (302327793-302327673) | |
| 75-188, gnl|galGal2|chr1 (9107091-9106965) | |
| 75-188, gnl|hg17|chr7 (106492665-106492822) | |
| 75-188, gnl|Hg17|chr7 (106492780-106492667) | |
| 75-188, gnl|loxAfr1|scaffold_52760 (11413-11553) | |
| 75-188, gnl|mm7|chr12 (29708771-29708615) | |
| 75-188, gnl|Mm7|chr12 (29708654-29708767) | |
| 75-188, gnl|monDom2|scaffold_22 (45452474-45452306) | |
| 75-188, gnl|panTro1|chr6 (108403577-108403734) | |
| 75-188, gnl|rheMac2|chr3 (144680563-144680720) | |
| 75-188, gnl|rn3|chr6 (49833458-49833301) | |
| 75-188, gnl|tetNig1|chrUn_random (48536089-48536209) | |
| 75-188, gnl|xenTro1|scaffold_452 (311932-312084) | |
| 346-591, gnl|bosTau2|chr4 (20540908-20540663) | |
| 346-591, gnl|Hg17|chr7 (106471091-106470846) | |
| 346-591, gnl|Mm7|chr12 (29733202-29733447) | |
| 661-795, gnl|bosTau2|chr4 (20523888-20523754) | |
| 661-795, gnl|canFam2|chr18 (16316491-16316329) | |
| 661-795, gnl|dasNov1|scaffold_2558 (30133-29975) | |
| 661-795, gnl|echTel1|scaffold_295478 (27391-27550) | |
| 661-795, gnl|fr1|chrUn (302328998-302328867) | |
| 661-795, gnl|galGal2|chr1 (9121667-9121534) | |
| 661-795, gnl|hg17|chr7 (106445490-106445650) | |
| 661-795, gnl|Hg17|chr7 (106445628-106445495) | |
| 661-795, gnl|loxAfr1|scaffold_29476 (27832-27993) | |
| 661-795, gnl|mm7|chr12 (29759024-29758866) | |
| 661-795, gnl|Mm7|chr12 (29758886-29759017) | |
| 661-795, gnl|monDom2|scaffold_22 (45487817-45487655) | |
| 661-795, gnl|oryCun1|scaffold_211657 (8902-8750) | |
| 661-795, gnl|panTro1|chr6 (108355404-108355565) | |
| 661-795, gnl|rheMac2|chr3 (144633275-144633433) | |
| 661-795, gnl|rn3|chr6 (50198286-50198128) | |
| 661-795, gnl|tetNig1|chrUn_random (48534955-48535086) | |
| 661-795, gnl|xenTro1|scaffold_452 (275402-275534) | |
| 872-1281, gnl|bosTau2|chr4 (20513839-20513421) | |
| 872-1281, gnl|Hg17|chr7 (106438030-106437601) | |
| 872-1281, gnl|Mm7|chr12 (29764862-29765208) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| thg (0.253582) | |
| mgp (0.230681) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| ese (0.126502) | |
| ebs (0.118301) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.253582) | |
| mgp (0.230681) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| ese (0.126502) | |
| ebs (0.118301) |