Non-Coding RNA Search

Ss1.1-Pig4-TMW8043L17.3

Sequence:


               
               GGTTGTGATTTGATGGAGACAGAATGATTGTGGCTTTTTCTGCTGGGGTTTTTGTTGTGT
GATGTAGTGTGGTGTCTGTGAGGACAGACTTTGCAGTTGCTTGGACTCTTATCTACTCTA
TAGAATGGGGTTACTATACTTGCCTTATGGGGTTGCTGTAAAGACTCAGTGAAGTGGCGT
TTATATAGCAATTAGTAAATGATGAAACTTCTAGTTATTGGCTTAGGTAATAATAATGGT
AATAATAATTTATGACCATAAACACTTGGCTTCACCTTTTCTTTGCAACTGCGGATTCTA
AAGGAAACTATTTCTCTACACACTGGTCTGTTAATACTCTCCATAGAGTTGGGGTTCAAG
AGGAGACATTTTTGTTTTATAATAAACATATTACTATTTTATCACTGATGTTATAAAGAA
GCATTCCTGCAATTTTATTTTTTGAAGTTTTTTAAGACCTTAGTTTTAATGAATAATAAA
CTTCCTTTGAGAGGGTCCAGACGTATTCTTCCTAAACCCCATTCCTGGAACCTACTCTGA
TGGTGCTTTACCAAATCTTCCAAGTGCCTTCATGCATTTTTGCCTCATTTGAGCTTCAAA
ATAACCTTATGATGAGACAGGTAGACCTTATGCCCATTTTAGATAAGGGAGCAGCCTTAG
AGTGTTGGGGACATATCTCAAGATCAGAGCTCCCTGAATAATGAATGCCCCATGTTAGAG
TGGTGACAGGCGCAAGCAGTTGCTCGGCCAGTTTTGCTGGATGGCTAAGGGTCAATCGTG
AGTGATGGATCTTTATTTGAAAACAGATCTCCTAATTCCTAGCTCTACTCCTAGATGTAG
GGTGAAAACAAACTGGAATTAAGAGTACTTACTTTTGTGAATGCTTTCTTAAGCCTCTGC
AGTATTTAAGTAAAGTAATAAGAATAATAGCTAAAGTTATTCAGTGCTTACTGTGTTCCT
GGTACTTAGTTTCTAAGTGTTCTCTGTATATTAACTAATTTAATTCTCACAACCATATCA
TGAGGGAGGTACTGTTTTTTCCCTCATTTCCCTGATGAGGAAACCAAGACACAAAGAAAT
TATGAGCGTTTACACCAGCATAATCAAGATCTCACATTTAGGACCAACCAAGCCTAGATA
TGTCCGCTTAACTACCATGCTGTGTTGCCTGCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTGTGATTTGATGGAGACAGAATGATTGTGGCTTTTTCTGCTGGGGTTTTTGTTGTGT
GATGTAGTGTGGTGTCTGTGAGGACAGACTTTGCAGTTGCTTGGACTCTTATCTACTCTA
TAGAATGGGGTTACTATACTTGCCTTATGGGGTTGCTGTAAAGACTCAGTGAAGTGGCGT
TTATATAGCAATTAGTAAATGATGAAACTTCTAGTTATTGGCTTAGGTAATAATAATGGT
AATAATAATTTATGACCATAAACACTTGGCTTCACCTTTTCTTTGCAACTGCGGATTCTA
AAGGAAACTATTTCTCTACACACTGGTCTGTTAATACTCTCCATAGAGTTGGGGTTCAAG
AGGAGACATTTTTGTTTTATAATAAACATATTACTATTTTATCACTGATGTTATAAAGAA
GCATTCCTGCAATTTTATTTTTTGAAGTTTTTTAAGACCTTAGTTTTAATGAATAATAAA
CTTCCTTTGAGAGGGTCCAGACGTATTCTTCCTAAACCCCATTCCTGGAACCTACTCTGA
TGGTGCTTTACCAAATCTTCCAAGTGCCTTCATGCATTTTTGCCTCATTTGAGCTTCAAA
ATAACCTTATGATGAGACAGGTAGACCTTATGCCCATTTTAGATAAGGGAGCAGCCTTAG
AGTGTTGGGGACATATCTCAAGATCAGAGCTCCCTGAATAATGAATGCCCCATGTTAGAG
TGGTGACAGGCGCAAGCAGTTGCTCGGCCAGTTTTGCTGGATGGCTAAGGGTCAATCGTG
AGTGATGGATCTTTATTTGAAAACAGATCTCCTAATTCCTAGCTCTACTCCTAGATGTAG
GGTGAAAACAAACTGGAATTAAGAGTACTTACTTTTGTGAATGCTTTCTTAAGCCTCTGC
AGTATTTAAGTAAAGTAATAAGAATAATAGCTAAAGTTATTCAGTGCTTACTGTGTTCCT
GGTACTTAGTTTCTAAGTGTTCTCTGTATATTAACTAATTTAATTCTCACAACCATATCA
TGAGGGAGGTACTGTTTTTTCCCTCATTTCCCTGATGAGGAAACCAAGACACAAAGAAAT
TATGAGCGTTTACACCAGCATAATCAAGATCTCACATTTAGGACCAACCAAGCCTAGATA
TGTCCGCTTAACTACCATGCTGTGTTGCCTGCCTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               960-1079, + strand, RNAz p=0.518051

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               960-1079, + strand, RNAz p=0.518051

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-1174, gnl|bosTau2|chr26 (22665029-22663903)
               

               
               3-1174, gnl|Hg17|chr10 (115661812-115662988)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1174, gnl|bosTau2|chr26 (22665029-22663903)
               

               
               3-1174, gnl|Hg17|chr10 (115661812-115662988)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               jca (0.11396)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               jca (0.11396)

	3-1174, gnl\|bosTau2\|chr26 (22665029-22663903)
	3-1174, gnl\|Hg17\|chr10 (115661812-115662988)

	nms (0.213858)
	fbs (0.175346)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	hlv (0.139256)
	ret (0.128733)
	sug (0.127291)
	jca (0.11396)