Non-Coding RNA Search

Ss1.1-Pig4-TMW8043M04.3

Sequence:


               
               CTCAGATTCTGGAAGAAAATAGTGATTTGATTCGTTCTATGGAACAGCTGACCTCCTCTT
TGAATGAAGGCAAAAATACTCAAGTGATTCACCAGAAGACCCAAGAGAAAATTGGGGAAT
TCAAAGGAAGACTAGAGCAACACCTAACAGGGAGAAAATGGAGGAACACTGTTGACCAGA
TCTGGTCCTTTGGCCCAAGAAAATGTGGGCCCAACATATTAGTGAATAAAAGTGAAGATT
TCCAGAACTCAGTGTGGACAGGTCCAGATGGCAAAGCCTCCCAGGAAGCCAACAGATACC
GAGATTTGGGCAACAGCATCGTGAGTGGCTTCCAGCTAGCAACCCTCTCGGGCCCCATGT
GCGAAGAGCCTCTCATGGGTGTCTGTTTTGTTCTGGAAAAATGGGACTTAAGTAAATTTG
AAGAGCAAACAGCAAGTGATAAGCAGAATCAAAAACAAAGTGATCTGGTAGACGTGGGGC
AGGGGGAAGGTGAAACCTCTTCTGCTGGAGATGAAAACCAAGAGGTGCACAATGGCTGCT
CTGAGCCGTTTGAGAAGAGGCCTTCCCAGAAAGGAGAGTCTTCACTCACTGACTGCTATG
GACCCTTCTCGGGGCAGCTGATTGCCACCATGAAAGAAGCATGTCGCTATGCACTACAGG
TGAAACCTCAGCGTCTGATGGCAGCAATGTACACGTGTGACATCATGGCGACCAGTGATG
TTCTCGGTCGGGTCTATGCTGTCTTGTCCAAGAGAGAGGGTCGAGTGCTCCAAGAAGAAA
TGAAAGAAGGGACGGACATGTTCATCATCAAGGCCGTGCTGCCTGTGGCCGAAAGCTTTG
GCTTTGCTGATGAAATCAGGAAGAGGACAAGTGGCCTGGCCAGCCCGCAGCTGGTGTTCA
GCCATTGGGAGATCATCCCCAGCGACCCTTTCTGGGTGCCAACCACTGAGGAGGAGTACC
TGCACTTTGGGGAAAAGGCTGATTCCGAGAACCAGGCCCGGAAGTACATGAACGCGGTGC
GTAAGCGGAAGGGTCTTTATGTGGAAGAAAAGATTGTGGAGCACGCAGAGAAGCAGAGAA
CCCTCAGCAAAAATAAGTAACTGCTACCACTGGCAGATTCTTCGCTTCGTAATGAATTAA
AAAGCATCACCCAGGCTTTGGTACTGGGAGTGTTTCTTTACACTGCATCATCTGTGTGCA
TTCACTTTCAATAAAGTTGATCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGATTCTGGAAGAAAATAGTGATTTGATTCGTTCTATGGAACAGCTGACCTCCTCTT
TGAATGAAGGCAAAAATACTCAAGTGATTCACCAGAAGACCCAAGAGAAAATTGGGGAAT
TCAAAGGAAGACTAGAGCAACACCTAACAGGGAGAAAATGGAGGAACACTGTTGACCAGA
TCTGGTCCTTTGGCCCAAGAAAATGTGGGCCCAACATATTAGTGAATAAAAGTGAAGATT
TCCAGAACTCAGTGTGGACAGGTCCAGATGGCAAAGCCTCCCAGGAAGCCAACAGATACC
GAGATTTGGGCAACAGCATCGTGAGTGGCTTCCAGCTAGCAACCCTCTCGGGCCCCATGT
GCGAAGAGCCTCTCATGGGTGTCTGTTTTGTTCTGGAAAAATGGGACTTAAGTAAATTTG
AAGAGCAAACAGCAAGTGATAAGCAGAATCAAAAACAAAGTGATCTGGTAGACGTGGGGC
AGGGGGAAGGTGAAACCTCTTCTGCTGGAGATGAAAACCAAGAGGTGCACAATGGCTGCT
CTGAGCCGTTTGAGAAGAGGCCTTCCCAGAAAGGAGAGTCTTCACTCACTGACTGCTATG
GACCCTTCTCGGGGCAGCTGATTGCCACCATGAAAGAAGCATGTCGCTATGCACTACAGG
TGAAACCTCAGCGTCTGATGGCAGCAATGTACACGTGTGACATCATGGCGACCAGTGATG
TTCTCGGTCGGGTCTATGCTGTCTTGTCCAAGAGAGAGGGTCGAGTGCTCCAAGAAGAAA
TGAAAGAAGGGACGGACATGTTCATCATCAAGGCCGTGCTGCCTGTGGCCGAAAGCTTTG
GCTTTGCTGATGAAATCAGGAAGAGGACAAGTGGCCTGGCCAGCCCGCAGCTGGTGTTCA
GCCATTGGGAGATCATCCCCAGCGACCCTTTCTGGGTGCCAACCACTGAGGAGGAGTACC
TGCACTTTGGGGAAAAGGCTGATTCCGAGAACCAGGCCCGGAAGTACATGAACGCGGTGC
GTAAGCGGAAGGGTCTTTATGTGGAAGAAAAGATTGTGGAGCACGCAGAGAAGCAGAGAA
CCCTCAGCAAAAATAAGTAACTGCTACCACTGGCAGATTCTTCGCTTCGTAATGAATTAA
AAAGCATCACCCAGGCTTTGGTACTGGGAGTGTTTCTTTACACTGCATCATCTGTGTGCA
TTCACTTTCAATAAAGTTGATCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57047889|ref|XP_536210.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57047889|ref|XP_536210.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-316, + strand, RNAz p=0.843144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-316, + strand, RNAz p=0.843144

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-728, gnl|bosTau2|chr21 (16257445-16256715)
               

               
               1-728, gnl|Hg17|chr15 (80231562-80230859)
               

               
               1-728, gnl|Mm7|chr7 (78684365-78685089)
               


               
               910-1223, gnl|bosTau2|chr21 (17586304-17586617)
               

               
               910-1223, gnl|Hg17|chr15 (80209959-80209645)
               

               
               910-1223, gnl|Mm7|chr7 (78699162-78699491)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-728, gnl|bosTau2|chr21 (16257445-16256715)
               

               
               1-728, gnl|Hg17|chr15 (80231562-80230859)
               

               
               1-728, gnl|Mm7|chr7 (78684365-78685089)
               


               
               910-1223, gnl|bosTau2|chr21 (17586304-17586617)
               

               
               910-1223, gnl|Hg17|chr15 (80209959-80209645)
               

               
               910-1223, gnl|Mm7|chr7 (78699162-78699491)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.39557)
               

               
               cte (0.29274)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ova (0.129132)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               cte (0.29274)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ova (0.129132)

	1-728, gnl\|bosTau2\|chr21 (16257445-16256715)
	1-728, gnl\|Hg17\|chr15 (80231562-80230859)
	1-728, gnl\|Mm7\|chr7 (78684365-78685089)

	910-1223, gnl\|bosTau2\|chr21 (17586304-17586617)
	910-1223, gnl\|Hg17\|chr15 (80209959-80209645)
	910-1223, gnl\|Mm7\|chr7 (78699162-78699491)

	fcc (0.39557)
	cte (0.29274)
	nep (0.183925)
	fty (0.17584)
	ova (0.129132)