Ss1.1-Pig4-TMW8043M05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCACCGTGACGTTAAGCCCAGCAATTTTTTATATAATAGGCGCCTGAAAAAGTATGCC TTGGTAGACTTTGGTTTGGCCCAAGGAACCCATGATACGAAAATAGAGCTTCTCAAATTT GTCCAGTCTGAAGCTCAGCAGGAAAGCTGTTCACAAAATAAATCCTATGTAATCACCGGA AGCAAAATTTCACTGAGTGGCCCAGCAGCACCTAAGGAGCTGGGTCCGCAGCCTACCACA AAAACCTCTGTCAAGAGGCCCTACACACATGCGCAGATTCAGATTAAACAAGGACAAGAT GGAAAGGAAGGATCTGTAGGCCTTTCTGTCCAGCGCTCTGTTTTTGGAGAAAGAAATTTC AATATACACAGCTCCGTGTCACATGAGAGCCCTGCAGTGAAACTTATGAAGCAGTCAAAG ACTGTGGATTTGCTATCTAGAAAATTAGCAACAAAAAAGAAGGCTATTTCTACAAAAGTT GTGAATAGTGGTGTGATGAGGAAAACTGCCAGTTCTTGCCCAGCCAGCCTGACCTGTGAC TGTTATGCAACAGATAAAGTTTGCAGTATTTGCCTTTCAAGGCGGCAGCAGGTGGCACCT CGGGCAGGTACACCAGGCTTCAGAGCACCAGAGGTCTTGACCAAGTGCCCCAATCAGACC ACAGCAATTGACATGTGGTCTGCAGGTGTCATATTCCTCTCTCTGCTTAGTGGACGGTAT CCATTTTATAAAGCAAGTGATGATTTAACTGCTCTGGCTCAAATTATGACCATTCGTGGA TCCAGGGAAACTATCCAGGCTGCTAAAACTTTTGGTAAGCAGTTTTACATTATAGAACAA AACAAATACCTTTTGCATATCTCCTATACATCACTTAAATTGTGAAATTCTCTTGACAAA TAAACATCTGTGTTCCTGCTAAAATCTGATGTTGGAAAGTTTCTTAGTTGTTTGAAAATT AACGGCAATGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCACCGTGACGTTAAGCCCAGCAATTTTTTATATAATAGGCGCCTGAAAAAGTATGCC TTGGTAGACTTTGGTTTGGCCCAAGGAACCCATGATACGAAAATAGAGCTTCTCAAATTT GTCCAGTCTGAAGCTCAGCAGGAAAGCTGTTCACAAAATAAATCCTATGTAATCACCGGA AGCAAAATTTCACTGAGTGGCCCAGCAGCACCTAAGGAGCTGGGTCCGCAGCCTACCACA AAAACCTCTGTCAAGAGGCCCTACACACATGCGCAGATTCAGATTAAACAAGGACAAGAT GGAAAGGAAGGATCTGTAGGCCTTTCTGTCCAGCGCTCTGTTTTTGGAGAAAGAAATTTC AATATACACAGCTCCGTGTCACATGAGAGCCCTGCAGTGAAACTTATGAAGCAGTCAAAG ACTGTGGATTTGCTATCTAGAAAATTAGCAACAAAAAAGAAGGCTATTTCTACAAAAGTT GTGAATAGTGGTGTGATGAGGAAAACTGCCAGTTCTTGCCCAGCCAGCCTGACCTGTGAC TGTTATGCAACAGATAAAGTTTGCAGTATTTGCCTTTCAAGGCGGCAGCAGGTGGCACCT CGGGCAGGTACACCAGGCTTCAGAGCACCAGAGGTCTTGACCAAGTGCCCCAATCAGACC ACAGCAATTGACATGTGGTCTGCAGGTGTCATATTCCTCTCTCTGCTTAGTGGACGGTAT CCATTTTATAAAGCAAGTGATGATTTAACTGCTCTGGCTCAAATTATGACCATTCGTGGA TCCAGGGAAACTATCCAGGCTGCTAAAACTTTTGGTAAGCAGTTTTACATTATAGAACAA AACAAATACCTTTTGCATATCTCCTATACATCACTTAAATTGTGAAATTCTCTTGACAAA TAAACATCTGTGTTCCTGCTAAAATCTGATGTTGGAAAGTTTCTTAGTTGTTTGAAAATT AACGGCAATGTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 54-307, gnl|bosTau2|chr3 (42850698-42850445) | |
| 54-307, gnl|Hg17|chr1 (91690636-91690886) | |
| 54-307, gnl|Mm7|chr5 (106150791-106151035) | |
| 403-582, gnl|bosTau2|chr3 (42848969-42848790) | |
| 403-582, gnl|canFam2|chr6 (60399803-60399675) | |
| 403-582, gnl|dasNov1|scaffold_10691 (49973-49846) | |
| 403-582, gnl|echTel1|scaffold_85887 (3970-4098) | |
| 403-582, gnl|galGal2|chr8 (14852226-14852086) | |
| 403-582, gnl|hg17|chr1 (91692383-91692511) | |
| 403-582, gnl|Hg17|chr1 (91692397-91692576) | |
| 403-582, gnl|loxAfr1|scaffold_9688 (40649-40777) | |
| 403-582, gnl|mm7|chr5 (106152488-106152610) | |
| 403-582, gnl|Mm7|chr5 (106152499-106152675) | |
| 403-582, gnl|monDom2|scaffold_87 (2126625-2126498) | |
| 403-582, gnl|panTro1|chr1 (90467852-90467980) | |
| 403-582, gnl|rheMac2|chr1 (94512548-94512676) | |
| 403-582, gnl|rn3|chr14 (3430456-3430334) | |
| 403-582, gnl|xenTro1|scaffold_36 (3242503-3242378) | |
| 661-938, gnl|bosTau2|chr3 (42844548-42844263) | |
| 661-938, gnl|Hg17|chr1 (91697704-91697984) | |
| 661-938, gnl|Mm7|chr5 (106156305-106156556) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-307, gnl|bosTau2|chr3 (42850698-42850445) | |
| 54-307, gnl|Hg17|chr1 (91690636-91690886) | |
| 54-307, gnl|Mm7|chr5 (106150791-106151035) | |
| 403-582, gnl|bosTau2|chr3 (42848969-42848790) | |
| 403-582, gnl|canFam2|chr6 (60399803-60399675) | |
| 403-582, gnl|dasNov1|scaffold_10691 (49973-49846) | |
| 403-582, gnl|echTel1|scaffold_85887 (3970-4098) | |
| 403-582, gnl|galGal2|chr8 (14852226-14852086) | |
| 403-582, gnl|hg17|chr1 (91692383-91692511) | |
| 403-582, gnl|Hg17|chr1 (91692397-91692576) | |
| 403-582, gnl|loxAfr1|scaffold_9688 (40649-40777) | |
| 403-582, gnl|mm7|chr5 (106152488-106152610) | |
| 403-582, gnl|Mm7|chr5 (106152499-106152675) | |
| 403-582, gnl|monDom2|scaffold_87 (2126625-2126498) | |
| 403-582, gnl|panTro1|chr1 (90467852-90467980) | |
| 403-582, gnl|rheMac2|chr1 (94512548-94512676) | |
| 403-582, gnl|rn3|chr14 (3430456-3430334) | |
| 403-582, gnl|xenTro1|scaffold_36 (3242503-3242378) | |
| 661-938, gnl|bosTau2|chr3 (42844548-42844263) | |
| 661-938, gnl|Hg17|chr1 (91697704-91697984) | |
| 661-938, gnl|Mm7|chr5 (106156305-106156556) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| ldo (0.0970026) |