Ss1.1-Pig4-TMW8043M11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGAAGGCAGCCTCGCCATGGACTCGGCCCTCAGCGACCCGCATAATGACAGTGCCGAGG CAGGCGGCCCAACCAATGGCACGACGCGGCCGCCTTCTACACCTGAGGGCATCGCGCTGG CCTACGGCAGCCTCCTGCTCATGGCGCTGCTGCCCATCTTCTTCGGCGCCCTGCGCTCGG TGCGCTGCGCTCGCGGCAAGAACGCCTCGGACATGCCCGAGACCATCACCAGCCGGGACG CCGCCCGCTTCCCCATCATCGCCAGCTGCACGCTCTTGGGGCTCTACCTCTTTTTCAAAA TATTCTCCCAGGAGTACATCAACCTCTTGCTGTCCATGTATTTCTTCGTGCTGGGAATCC TGGCCCTGTCCCACACCATCAGCCCCTTCATGAATAAGTTTTTTCCAGCTAACTTCCCAA ATCGGCAGTACCAGCTGCTCTTCACGCAGGGCTCCGGGGAGAGCAAGGAAGAGATCATCA ATTATGAGTTTGACACCAAGGACCTGGTGTGCCTGGGCCTGAGCAGCATCGTTGGTGTCT GGTACCTGCTGAGGAAGCACTGGATTGCCAACAACCTCTTCGGCCTGGCCTTCTCCCTTA ACGGGGTGGAGCTCCTGCACCTGAACAACGTCAGCACCGGCTGCATCCTGCTGGGTGGGC TCTTCATCTACGATGTCTTCTGGGTGTTTGGCACCAATGTGATGGTGACAGTGGCCAAGT CCTTTGAGGCACCAATAAAATTGGTGTTTCCCCAGGATCTGCTGGAGAAGGGCCTGGAGG CAGACAACTTCGCCATGCTGGGACTCGGAGACATCGTCATTCCAGGAATCTTTATCGCCT TGCTGCTGCGTTTTGACATCAGCTTGAAGAAGAACACCCACACCTACTTCTACACCAGCT TTGCAGCCTACATCTTCGGCCTGGGCCTGACCATCTTCATCATGCATATCTTCAAGCACG CCCAGCCTGCCCTCCTGTACCTGGTCCCCGCCTGCATCGGCTTTCCTGTCCTGGTGGCCC TGGCCAAGGGAGAAGTGACAGAGATGTTCAGTTATGAGGAGTCAAATTCTAAGGATCCAG TAGCAGTGACAGAACCCAAAGAGGGAACAGAGGCCTCAACGTCGAAGGGGCTGGAGAAGA AGGAGAAATGATGTGGCTGCCGCCTGACCCTCTGAGGGCCAGACCCACCGGCCGGTGGCC CCACACAGGCCCGCACGGCAGGTCCTGCCGCAGGGGGGCGGGAGGCTCCGGGAGAGAGGC CTCCGGGGCCTGGTTCCCTCTCCCCCTTCTCGGCCTTCCTCTGCTCCTCCCCTCCCCTGA CGGCAACGGGGGCCCCCACCTGCCCCCACCCCCCAGACACCAGGTGGGAAAAGTGGGTCT GATTTTTAGACTTTTGTATTGTGGACTGACTTTGCCTCACATTAAAAACTTATCCCATTG AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGAAGGCAGCCTCGCCATGGACTCGGCCCTCAGCGACCCGCATAATGACAGTGCCGAGG CAGGCGGCCCAACCAATGGCACGACGCGGCCGCCTTCTACACCTGAGGGCATCGCGCTGG CCTACGGCAGCCTCCTGCTCATGGCGCTGCTGCCCATCTTCTTCGGCGCCCTGCGCTCGG TGCGCTGCGCTCGCGGCAAGAACGCCTCGGACATGCCCGAGACCATCACCAGCCGGGACG CCGCCCGCTTCCCCATCATCGCCAGCTGCACGCTCTTGGGGCTCTACCTCTTTTTCAAAA TATTCTCCCAGGAGTACATCAACCTCTTGCTGTCCATGTATTTCTTCGTGCTGGGAATCC TGGCCCTGTCCCACACCATCAGCCCCTTCATGAATAAGTTTTTTCCAGCTAACTTCCCAA ATCGGCAGTACCAGCTGCTCTTCACGCAGGGCTCCGGGGAGAGCAAGGAAGAGATCATCA ATTATGAGTTTGACACCAAGGACCTGGTGTGCCTGGGCCTGAGCAGCATCGTTGGTGTCT GGTACCTGCTGAGGAAGCACTGGATTGCCAACAACCTCTTCGGCCTGGCCTTCTCCCTTA ACGGGGTGGAGCTCCTGCACCTGAACAACGTCAGCACCGGCTGCATCCTGCTGGGTGGGC TCTTCATCTACGATGTCTTCTGGGTGTTTGGCACCAATGTGATGGTGACAGTGGCCAAGT CCTTTGAGGCACCAATAAAATTGGTGTTTCCCCAGGATCTGCTGGAGAAGGGCCTGGAGG CAGACAACTTCGCCATGCTGGGACTCGGAGACATCGTCATTCCAGGAATCTTTATCGCCT TGCTGCTGCGTTTTGACATCAGCTTGAAGAAGAACACCCACACCTACTTCTACACCAGCT TTGCAGCCTACATCTTCGGCCTGGGCCTGACCATCTTCATCATGCATATCTTCAAGCACG CCCAGCCTGCCCTCCTGTACCTGGTCCCCGCCTGCATCGGCTTTCCTGTCCTGGTGGCCC TGGCCAAGGGAGAAGTGACAGAGATGTTCAGTTATGAGGAGTCAAATTCTAAGGATCCAG TAGCAGTGACAGAACCCAAAGAGGGAACAGAGGCCTCAACGTCGAAGGGGCTGGAGAAGA AGGAGAAATGATGTGGCTGCCGCCTGACCCTCTGAGGGCCAGACCCACCGGCCGGTGGCC CCACACAGGCCCGCACGGCAGGTCCTGCCGCAGGGGGGCGGGAGGCTCCGGGAGAGAGGC CTCCGGGGCCTGGTTCCCTCTCCCCCTTCTCGGCCTTCCTCTGCTCCTCCCCTCCCCTGA CGGCAACGGGGGCCCCCACCTGCCCCCACCCCCCAGACACCAGGTGGGAAAAGTGGGTCT GATTTTTAGACTTTTGTATTGTGGACTGACTTTGCCTCACATTAAAAACTTATCCCATTG AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 41-1422, - strand, RNAz p=0.980671 | |
| 861-965, - strand, RNAz p=0.960283 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-1422, - strand, RNAz p=0.980671 | |
| 861-965, - strand, RNAz p=0.960283 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 2-200, gnl|bosTau2|chr13 (43262481-43262679) | |
| 2-200, gnl|Hg17|chr20 (29566000-29566198) | |
| 2-200, gnl|Mm7|chr2 (152410423-152410621) | |
| 556-686, gnl|bosTau2|chr13 (43283961-43284091) | |
| 556-686, gnl|canFam2|chr24 (24018943-24019090) | |
| 556-686, gnl|danRer3|chr23 (1000363-1000502) | |
| 556-686, gnl|dasNov1|scaffold_72925 (727-874) | |
| 556-686, gnl|echTel1|scaffold_58684 (1263-1405) | |
| 556-686, gnl|fr1|chrUn (251961521-251961672) | |
| 556-686, gnl|galGal2|chr20 (9575650-9575791) | |
| 556-686, gnl|hg17|chr20 (29600661-29600808) | |
| 556-686, gnl|Hg17|chr20 (29600669-29600799) | |
| 556-686, gnl|loxAfr1|scaffold_27323 (34699-34846) | |
| 556-686, gnl|mm7|chr2 (152429684-152429831) | |
| 556-686, gnl|Mm7|chr2 (152429692-152429822) | |
| 556-686, gnl|monDom2|scaffold_38 (1545478-1545335) | |
| 556-686, gnl|panTro1|chr21 (31290712-31290859) | |
| 556-686, gnl|rheMac2|chr10 (33020475-33020328) | |
| 556-686, gnl|rn3|chr3 (142945492-142945639) | |
| 556-686, gnl|tetNig1|chrUn_random (120962689-120962542) | |
| 556-686, gnl|xenTro1|scaffold_1725 (94374-94516) | |
| 861-965, gnl|bosTau2|chr13 (43293051-43293155) | |
| 861-965, gnl|canFam2|chr24 (24028807-24028938) | |
| 861-965, gnl|danRer3|chr23 (1004828-1004941) | |
| 861-965, gnl|dasNov1|scaffold_29139 (9606-9475) | |
| 861-965, gnl|echTel1|scaffold_304328 (3467-3604) | |
| 861-965, gnl|fr1|chrUn (251962075-251962189) | |
| 861-965, gnl|galGal2|chr20 (9579356-9579475) | |
| 861-965, gnl|hg17|chr20 (29613073-29613206) | |
| 861-965, gnl|Hg17|chr20 (29613096-29613200) | |
| 861-965, gnl|loxAfr1|scaffold_54926 (606-737) | |
| 861-965, gnl|mm7|chr2 (152436316-152436447) | |
| 861-965, gnl|Mm7|chr2 (152436337-152436441) | |
| 861-965, gnl|monDom2|scaffold_38 (1538049-1537922) | |
| 861-965, gnl|oryCun1|scaffold_210023 (74593-74719) | |
| 861-965, gnl|panTro1|chr21 (31304766-31304899) | |
| 861-965, gnl|rheMac2|chr10 (33008185-33008052) | |
| 861-965, gnl|rn3|chr3 (142952160-142952289) | |
| 861-965, gnl|tetNig1|chrUn_random (120961910-120961799) | |
| 1235-1440, gnl|bosTau2|chr13 (43300801-43301017) | |
| 1235-1440, gnl|canFam2|chr24 (24037292-24037716) | |
| 1235-1440, gnl|dasNov1|scaffold_29139 (2923-2544) | |
| 1235-1440, gnl|echTel1|scaffold_308406 (164139-163769) | |
| 1235-1440, gnl|hg17|chr20 (29620589-29621000) | |
| 1235-1440, gnl|Hg17|chr20 (29620798-29621004) | |
| 1235-1440, gnl|loxAfr1|scaffold_54926 (9425-9811) | |
| 1235-1440, gnl|mm7|chr2 (152445484-152445869) | |
| 1235-1440, gnl|Mm7|chr2 (152445686-152445873) | |
| 1235-1440, gnl|oryCun1|scaffold_131196 (3981-3571) | |
| 1235-1440, gnl|panTro1|chr21 (31314218-31314629) | |
| 1235-1440, gnl|rheMac2|chr10 (33001006-33000601) | |
| 1235-1440, gnl|rn3|chr3 (142961169-142961554) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-200, gnl|bosTau2|chr13 (43262481-43262679) | |
| 2-200, gnl|Hg17|chr20 (29566000-29566198) | |
| 2-200, gnl|Mm7|chr2 (152410423-152410621) | |
| 556-686, gnl|bosTau2|chr13 (43283961-43284091) | |
| 556-686, gnl|canFam2|chr24 (24018943-24019090) | |
| 556-686, gnl|danRer3|chr23 (1000363-1000502) | |
| 556-686, gnl|dasNov1|scaffold_72925 (727-874) | |
| 556-686, gnl|echTel1|scaffold_58684 (1263-1405) | |
| 556-686, gnl|fr1|chrUn (251961521-251961672) | |
| 556-686, gnl|galGal2|chr20 (9575650-9575791) | |
| 556-686, gnl|hg17|chr20 (29600661-29600808) | |
| 556-686, gnl|Hg17|chr20 (29600669-29600799) | |
| 556-686, gnl|loxAfr1|scaffold_27323 (34699-34846) | |
| 556-686, gnl|mm7|chr2 (152429684-152429831) | |
| 556-686, gnl|Mm7|chr2 (152429692-152429822) | |
| 556-686, gnl|monDom2|scaffold_38 (1545478-1545335) | |
| 556-686, gnl|panTro1|chr21 (31290712-31290859) | |
| 556-686, gnl|rheMac2|chr10 (33020475-33020328) | |
| 556-686, gnl|rn3|chr3 (142945492-142945639) | |
| 556-686, gnl|tetNig1|chrUn_random (120962689-120962542) | |
| 556-686, gnl|xenTro1|scaffold_1725 (94374-94516) | |
| 861-965, gnl|bosTau2|chr13 (43293051-43293155) | |
| 861-965, gnl|canFam2|chr24 (24028807-24028938) | |
| 861-965, gnl|danRer3|chr23 (1004828-1004941) | |
| 861-965, gnl|dasNov1|scaffold_29139 (9606-9475) | |
| 861-965, gnl|echTel1|scaffold_304328 (3467-3604) | |
| 861-965, gnl|fr1|chrUn (251962075-251962189) | |
| 861-965, gnl|galGal2|chr20 (9579356-9579475) | |
| 861-965, gnl|hg17|chr20 (29613073-29613206) | |
| 861-965, gnl|Hg17|chr20 (29613096-29613200) | |
| 861-965, gnl|loxAfr1|scaffold_54926 (606-737) | |
| 861-965, gnl|mm7|chr2 (152436316-152436447) | |
| 861-965, gnl|Mm7|chr2 (152436337-152436441) | |
| 861-965, gnl|monDom2|scaffold_38 (1538049-1537922) | |
| 861-965, gnl|oryCun1|scaffold_210023 (74593-74719) | |
| 861-965, gnl|panTro1|chr21 (31304766-31304899) | |
| 861-965, gnl|rheMac2|chr10 (33008185-33008052) | |
| 861-965, gnl|rn3|chr3 (142952160-142952289) | |
| 861-965, gnl|tetNig1|chrUn_random (120961910-120961799) | |
| 1235-1440, gnl|bosTau2|chr13 (43300801-43301017) | |
| 1235-1440, gnl|canFam2|chr24 (24037292-24037716) | |
| 1235-1440, gnl|dasNov1|scaffold_29139 (2923-2544) | |
| 1235-1440, gnl|echTel1|scaffold_308406 (164139-163769) | |
| 1235-1440, gnl|hg17|chr20 (29620589-29621000) | |
| 1235-1440, gnl|Hg17|chr20 (29620798-29621004) | |
| 1235-1440, gnl|loxAfr1|scaffold_54926 (9425-9811) | |
| 1235-1440, gnl|mm7|chr2 (152445484-152445869) | |
| 1235-1440, gnl|Mm7|chr2 (152445686-152445873) | |
| 1235-1440, gnl|oryCun1|scaffold_131196 (3981-3571) | |
| 1235-1440, gnl|panTro1|chr21 (31314218-31314629) | |
| 1235-1440, gnl|rheMac2|chr10 (33001006-33000601) | |
| 1235-1440, gnl|rn3|chr3 (142961169-142961554) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| pty (0.285429) | |
| ute (0.265569) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cli (0.152812) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| clu (0.119646) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.285429) | |
| ute (0.265569) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cli (0.152812) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| clu (0.119646) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |