Non-Coding RNA Search

Ss1.1-Pig4-TMW8043M13.5

Sequence:


               
               GACTGCTGTAGGATTTTAAATTAATGTTTTTGACTCCTGTACATTTTATGGTAGCATAGC
AAGCAGTCTCACAGAAGGCAGGCTAGCCATTCACGGCCTGACACACTGTAATAGGTAGAA
GCTTTCAGTGTGGTTTTTGTTGTTGTTTGGGTTTTGTGCCCCCCATCCTACTTACCACCC
ACCTCCTCCTCGTCCCTACCTCCATCCCTCTTCTGCCCTCTGCTGCGTGCTAGTCGTCGT
TTTTACTCCTCATGTGTACAACATCTCACCAAGAAGCAAGAGCATGGGGTCCAGCAGTTG
GGACCCGAAAGACAGTCTGGAGAGGAAGCGAGCGGCAGCGGCGTCTGCACCGCCCACAGA
GGGGCCGGGCCCCCGCCCAGCTGCAGTCTCCCAGCCTCTGCTTTCAGAGTGAAATTCAAG
GCAACACGGACACGTGTGCATCACGCACAGAAGAAGACACAACGCAGTCCATTCTGGAAA
AGGCGAAAGAAAGGAAAATAAACTTTTATTTGATATTTATTAGAAGGAAAGAGGACTGAA
AATTTTCTTGTGTAGAGACAGAAGAAAAGCATTTCTGATAGTCATTTCCTGGAAAAGTAA
TATTTTAAGGGGAAATTATGAAAACAATCTAAATGTCCAGTTGCTGTGCTAGGGTAGGGT
TATTTTCTGGGAGGTCTCTCCTTTGCGTGTGTGTGTGAGTGTTCATGCACGCACTCCGGC
CCATCTGCTCTCCGGGAGGGGAGGGAAGTGCGTGTGAGTGTGTGGAGCTAGCGTGGGACT
TGAGAGCTGCAAAACAGCTGCAGAGCAAAGCACATCCAGGAGCCCCGGTCGTCACTGGAG
TCTGGGCAACCCCAGCAAAGGAAAGGGGTGAGATCAATGCTCGTTGCTCTTCCAAGAGAG
TGGTTGGAGTCCCGTATGCTTCCATTATTGCTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTGCTGTAGGATTTTAAATTAATGTTTTTGACTCCTGTACATTTTATGGTAGCATAGC
AAGCAGTCTCACAGAAGGCAGGCTAGCCATTCACGGCCTGACACACTGTAATAGGTAGAA
GCTTTCAGTGTGGTTTTTGTTGTTGTTTGGGTTTTGTGCCCCCCATCCTACTTACCACCC
ACCTCCTCCTCGTCCCTACCTCCATCCCTCTTCTGCCCTCTGCTGCGTGCTAGTCGTCGT
TTTTACTCCTCATGTGTACAACATCTCACCAAGAAGCAAGAGCATGGGGTCCAGCAGTTG
GGACCCGAAAGACAGTCTGGAGAGGAAGCGAGCGGCAGCGGCGTCTGCACCGCCCACAGA
GGGGCCGGGCCCCCGCCCAGCTGCAGTCTCCCAGCCTCTGCTTTCAGAGTGAAATTCAAG
GCAACACGGACACGTGTGCATCACGCACAGAAGAAGACACAACGCAGTCCATTCTGGAAA
AGGCGAAAGAAAGGAAAATAAACTTTTATTTGATATTTATTAGAAGGAAAGAGGACTGAA
AATTTTCTTGTGTAGAGACAGAAGAAAAGCATTTCTGATAGTCATTTCCTGGAAAAGTAA
TATTTTAAGGGGAAATTATGAAAACAATCTAAATGTCCAGTTGCTGTGCTAGGGTAGGGT
TATTTTCTGGGAGGTCTCTCCTTTGCGTGTGTGTGTGAGTGTTCATGCACGCACTCCGGC
CCATCTGCTCTCCGGGAGGGGAGGGAAGTGCGTGTGAGTGTGTGGAGCTAGCGTGGGACT
TGAGAGCTGCAAAACAGCTGCAGAGCAAAGCACATCCAGGAGCCCCGGTCGTCACTGGAG
TCTGGGCAACCCCAGCAAAGGAAAGGGGTGAGATCAATGCTCGTTGCTCTTCCAAGAGAG
TGGTTGGAGTCCCGTATGCTTCCATTATTGCTTTTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               465-578, - strand, RNAz p=0.542224
               

               
               687-913, - strand, RNAz p=0.766365

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               465-578, - strand, RNAz p=0.542224
               

               
               687-913, - strand, RNAz p=0.766365

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               831-969, - strand, RNAmicro p=0.994497

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               831-969, - strand, RNAmicro p=0.994497

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-935, gnl|bosTau2|chr16 (46286098-46287046)
               

               
               1-935, gnl|Hg17|chr1 (180253497-180254435)
               

               
               1-935, gnl|Mm7|chr1 (152799580-152798681)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-935, gnl|bosTau2|chr16 (46286098-46287046)
               

               
               1-935, gnl|Hg17|chr1 (180253497-180254435)
               

               
               1-935, gnl|Mm7|chr1 (152799580-152798681)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               cga (0.279096)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)

	465-578, - strand, RNAz p=0.542224
	687-913, - strand, RNAz p=0.766365

	1-935, gnl\|bosTau2\|chr16 (46286098-46287046)
	1-935, gnl\|Hg17\|chr1 (180253497-180254435)
	1-935, gnl\|Mm7\|chr1 (152799580-152798681)

	cga (0.279096)
	ecc (0.23007)
	fli (0.202881)
	cag (0.151194)
	spl (0.143184)
	hlv (0.139256)
	nmm (0.132802)
	eru (0.120048)