Non-Coding RNA Search

Ss1.1-Pig4-TMW8043M14.3

Sequence:


               
               AAGGGCCCCCTTTTTCAAAAAAAAAGGGGAAGGGTAAAATTTGGCCCCCCCAAGGAAAAT
TTAAAAAGGGCCCCCCCTTTTTTTTTTTTTTTTTTGGTGGGGGTAAGGGGACAGGTTGGA
AGGGAGACAAAAAAACAAAATCAGAGAGAAAAAAAAAAAAACAAACATGACTCTTCCCAC
CCACTGCCACCCCTGGCCCCAGGCCTGAGTCGATGAGGGTGAGGATGAACACACACACAG
CGGGAGAACAGCAATAACTTAGGGTGGGGGAGGAGCTCAGGAGAACACAAAGTATAATCT
CCGGACTCCACGGCGAGGAGGCTGCCTGTCTAGCGGCCCGAAGGGCTGGGGTGAGGTGGG
GAAGCACACCGAGGAAGGAGGGGTAAGGGAGGAGAGGACCGGGACTGGAGAGACTTCACT
GAGTAGTGGGAGATAAAGTGCTCGATGCTCTAGACTGGGGCTGGAGAAGAGCTAGAGGTG
GTCACCTCCAGGGCGGCAGGGCCCGGGACTGGCGGGTTCGGGATCTCCGCCCAGCCAGAG
CCCCTGGCGGTGGTTGGTGGGAGGCAGAGGGGCCTGGCCGGCGCTGGCTGCGTGGTAGCA
GCCGGGGGATACGGCTGGGCCGCTCACCCCGAAGCAGGCCCCAACTAGCCAGTGTGTGGA
TGGCCCAGGGGGGCAAGCAGGTGGCTAAACCCTGGCTGGCCCGTGCCAGGCGCCAGTTCC
AGCCCTTGCACAGGGCCCAAAACCTTGCCAACAGGGCTAGTGGGTGTCGGGCAGTGCGAG
GATTCCCTCGCCGGGGCCCAGGGACAGGCAGACGGCTGCGGAAGCCATCCTTGTTGGTCT
TGGGGTAGAGCGCAAACAGGCCCCGGTCCCCCACGGCCCCACAGCCCTGGAGGGCCCGGA
AGGCCATGGGCGACAGACGCAGCAGAGCCCGCAACCAGAGTCGAGAGATGCCCCGGCGCA
TCCGGGGGACCTGCTGCCTCACCCATTTGCCCCCAGCTGTCAGAGCTGCTAGAGGTAGAA
ATAGGCCTGGCCAGGCTAGAAGCCAGGCAGCCCCAAGGCCCAGAGGGACACCCATTAGGC
CTCGGCGCCAGCTCAGACTCAGGACGGCCCCCAGTGCAGTGCCCTGGGCCAGGAGTAGGA
ACAGACTGGGGGGCAGGTGCAGAGCTGTACAAAGAAGTAGGTAGGAGGCCCCCAGGCCCA
CCAGCCCCACCTCAAGGGCCAGCAGGGCTGCCTGCAGGCCACCCCCACCTTGAGCTGCCA
GCAGCGGGAGCAGCAGCAGAAGTAGCAGGGGCAAGAGGCCAGAGGAGGACCCCACTGCAA
AGGAGAGTCCAGCCAAGAGGCCATGGGACAGGAGCCCAGGGAGCTGGCTAGTAGAGCTGG
GTCTCAGATGTGTTGGGGGTGGCTCAGGGGGGATGTCTGGTGAGGGACAGCCATCTCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGCCCCCTTTTTCAAAAAAAAAGGGGAAGGGTAAAATTTGGCCCCCCCAAGGAAAAT
TTAAAAAGGGCCCCCCCTTTTTTTTTTTTTTTTTTGGTGGGGGTAAGGGGACAGGTTGGA
AGGGAGACAAAAAAACAAAATCAGAGAGAAAAAAAAAAAAACAAACATGACTCTTCCCAC
CCACTGCCACCCCTGGCCCCAGGCCTGAGTCGATGAGGGTGAGGATGAACACACACACAG
CGGGAGAACAGCAATAACTTAGGGTGGGGGAGGAGCTCAGGAGAACACAAAGTATAATCT
CCGGACTCCACGGCGAGGAGGCTGCCTGTCTAGCGGCCCGAAGGGCTGGGGTGAGGTGGG
GAAGCACACCGAGGAAGGAGGGGTAAGGGAGGAGAGGACCGGGACTGGAGAGACTTCACT
GAGTAGTGGGAGATAAAGTGCTCGATGCTCTAGACTGGGGCTGGAGAAGAGCTAGAGGTG
GTCACCTCCAGGGCGGCAGGGCCCGGGACTGGCGGGTTCGGGATCTCCGCCCAGCCAGAG
CCCCTGGCGGTGGTTGGTGGGAGGCAGAGGGGCCTGGCCGGCGCTGGCTGCGTGGTAGCA
GCCGGGGGATACGGCTGGGCCGCTCACCCCGAAGCAGGCCCCAACTAGCCAGTGTGTGGA
TGGCCCAGGGGGGCAAGCAGGTGGCTAAACCCTGGCTGGCCCGTGCCAGGCGCCAGTTCC
AGCCCTTGCACAGGGCCCAAAACCTTGCCAACAGGGCTAGTGGGTGTCGGGCAGTGCGAG
GATTCCCTCGCCGGGGCCCAGGGACAGGCAGACGGCTGCGGAAGCCATCCTTGTTGGTCT
TGGGGTAGAGCGCAAACAGGCCCCGGTCCCCCACGGCCCCACAGCCCTGGAGGGCCCGGA
AGGCCATGGGCGACAGACGCAGCAGAGCCCGCAACCAGAGTCGAGAGATGCCCCGGCGCA
TCCGGGGGACCTGCTGCCTCACCCATTTGCCCCCAGCTGTCAGAGCTGCTAGAGGTAGAA
ATAGGCCTGGCCAGGCTAGAAGCCAGGCAGCCCCAAGGCCCAGAGGGACACCCATTAGGC
CTCGGCGCCAGCTCAGACTCAGGACGGCCCCCAGTGCAGTGCCCTGGGCCAGGAGTAGGA
ACAGACTGGGGGGCAGGTGCAGAGCTGTACAAAGAAGTAGGTAGGAGGCCCCCAGGCCCA
CCAGCCCCACCTCAAGGGCCAGCAGGGCTGCCTGCAGGCCACCCCCACCTTGAGCTGCCA
GCAGCGGGAGCAGCAGCAGAAGTAGCAGGGGCAAGAGGCCAGAGGAGGACCCCACTGCAA
AGGAGAGTCCAGCCAAGAGGCCATGGGACAGGAGCCCAGGGAGCTGGCTAGTAGAGCTGG
GTCTCAGATGTGTTGGGGGTGGCTCAGGGGGGATGTCTGGTGAGGGACAGCCATCTCCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6UW73_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6UW73_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               305-493, - strand, RNAz p=0.990852
               

               
               574-693, - strand, RNAz p=0.6857
               

               
               974-1281, - strand, RNAz p=0.987137

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-493, - strand, RNAz p=0.990852
               

               
               574-693, - strand, RNAz p=0.6857
               

               
               974-1281, - strand, RNAz p=0.987137

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AL137701, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AL137701, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               77-1281, gnl|bosTau2|chr25 (25339209-25338016)
               

               
               77-1281, gnl|Hg17|chr16 (29907186-29906005)
               

               
               77-1281, gnl|Mm7|chr7 (122966093-122967283)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-1281, gnl|bosTau2|chr25 (25339209-25338016)
               

               
               77-1281, gnl|Hg17|chr16 (29907186-29906005)
               

               
               77-1281, gnl|Mm7|chr7 (122966093-122967283)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               cov (0.132153)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               cov (0.132153)
               

               
               med (0.116252)

	305-493, - strand, RNAz p=0.990852
	574-693, - strand, RNAz p=0.6857
	974-1281, - strand, RNAz p=0.987137

	77-1281, gnl\|bosTau2\|chr25 (25339209-25338016)
	77-1281, gnl\|Hg17\|chr16 (29907186-29906005)
	77-1281, gnl\|Mm7\|chr7 (122966093-122967283)