Ss1.1-Pig4-TMW8043M17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGGGATCAGGAGTGGGAGCTGAGGGGAGGGAGAGGCGGGTCCGGGTCTGGTCGCAGC CGCTGCTCGCCCGAGGTGTCCAGGCCGGCTCGGTCCTCGGCTCCTGGGCACCATCTGCGA GGCTCCGCCGGGCCAGCGAGGGAGAGCCGCAGGCGGCGGCCGCCGCATCATGTCAGCCAA GGACGAGCGGGCCAAGGAGATCCTGAGGGGCTTCAAACTAAATTGGATGAACCTTCGGGA TGCTGAGACAGGGAAGATACTCTGGCAAGGAACAGAAGACCTGTCCGTCCCTGGAGTGGA GCACGAAGCCCGTGTTCCCAAGAAAATCCTCAAATGCAAGGCAGTGTCTCGAGAATTGAA CTTCTCTTCAGCAGAGCAAATGGAAAAATTTCGCCTGGAACAAAAAGTTTACTTCAAAGG GCAATGCCTAGAAGAGTGGTTCTTCGAGTTTGGCTTTGTGATCCCTAACTCCACAAACAC CTGGCAGTCCCTGATAGAGGCAGCGCCCGAGTCCCAGATGATGCCAGCCAGCGTGCTAAC CGGGAATGTTATCATAGAGACAAAGTTTTTTGACGACGATCTTCTTGTAAGCACATCCAG AGTGAGACTTTTCTACGTTTGAGAGAAGAATGTGTGTGCATTTCAAGAATATGTTTTTTT AGGGGGAAGGAGAAAACTGTTTACTTTTTTCCTCCATACATTCGATTTTTGACACTTCCA CCCCTAATTCCCTCTACGGCAAAACCCACCTGCAGCCACCAGGGGACCAGCTCTGTGTAG GTAACCAGAAGCCTTTTTTTCTCTAAGCCACCACCTTCCACTGACCAGACTAAACTCCCA AACCCCAGACCAGGCAGAGGGGGAAGTCTGGACTCCTTCCTGGAGTAGACACGGGGACAA ACACACCAAGAGCCGTGCCCGTCACCCTCCCTGCCTCTTCCTCGGGCCCTGCAGGCAACA CATCTTCCTTTGGCCCCTGGTTTTGGAAAAATTCATGTTCCTGACCCACGTTTAGTATTT TCCTACCATTTCTATTTCATACATTCTCATTCATTTAACTTGTAAAATAGACTGTGATAT TATTATTACGTAATGAATTAAAACATATGAATTAAAATATTCCTACGTCTTTAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGGGATCAGGAGTGGGAGCTGAGGGGAGGGAGAGGCGGGTCCGGGTCTGGTCGCAGC CGCTGCTCGCCCGAGGTGTCCAGGCCGGCTCGGTCCTCGGCTCCTGGGCACCATCTGCGA GGCTCCGCCGGGCCAGCGAGGGAGAGCCGCAGGCGGCGGCCGCCGCATCATGTCAGCCAA GGACGAGCGGGCCAAGGAGATCCTGAGGGGCTTCAAACTAAATTGGATGAACCTTCGGGA TGCTGAGACAGGGAAGATACTCTGGCAAGGAACAGAAGACCTGTCCGTCCCTGGAGTGGA GCACGAAGCCCGTGTTCCCAAGAAAATCCTCAAATGCAAGGCAGTGTCTCGAGAATTGAA CTTCTCTTCAGCAGAGCAAATGGAAAAATTTCGCCTGGAACAAAAAGTTTACTTCAAAGG GCAATGCCTAGAAGAGTGGTTCTTCGAGTTTGGCTTTGTGATCCCTAACTCCACAAACAC CTGGCAGTCCCTGATAGAGGCAGCGCCCGAGTCCCAGATGATGCCAGCCAGCGTGCTAAC CGGGAATGTTATCATAGAGACAAAGTTTTTTGACGACGATCTTCTTGTAAGCACATCCAG AGTGAGACTTTTCTACGTTTGAGAGAAGAATGTGTGTGCATTTCAAGAATATGTTTTTTT AGGGGGAAGGAGAAAACTGTTTACTTTTTTCCTCCATACATTCGATTTTTGACACTTCCA CCCCTAATTCCCTCTACGGCAAAACCCACCTGCAGCCACCAGGGGACCAGCTCTGTGTAG GTAACCAGAAGCCTTTTTTTCTCTAAGCCACCACCTTCCACTGACCAGACTAAACTCCCA AACCCCAGACCAGGCAGAGGGGGAAGTCTGGACTCCTTCCTGGAGTAGACACGGGGACAA ACACACCAAGAGCCGTGCCCGTCACCCTCCCTGCCTCTTCCTCGGGCCCTGCAGGCAACA CATCTTCCTTTGGCCCCTGGTTTTGGAAAAATTCATGTTCCTGACCCACGTTTAGTATTT TCCTACCATTTCTATTTCATACATTCTCATTCATTTAACTTGTAAAATAGACTGTGATAT TATTATTACGTAATGAATTAAAACATATGAATTAAAATATTCCTACGTCTTTAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 307-425, - strand, RNAz p=0.947842 | |
| 701-818, - strand, RNAz p=0.878203 | |
| 927-1045, - strand, RNAz p=0.81997 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 307-425, - strand, RNAz p=0.947842 | |
| 701-818, - strand, RNAz p=0.878203 | |
| 927-1045, - strand, RNAz p=0.81997 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-219, gnl|bosTau2|chr2 (73752183-73752408) | |
| 1-219, gnl|canFam2|chr25 (46634220-46634428) | |
| 1-219, gnl|dasNov1|scaffold_6633 (56993-57201) | |
| 1-219, gnl|echTel1|scaffold_310038 (57006-57214) | |
| 1-219, gnl|galGal2|chr9 (14723426-14723659) | |
| 1-219, gnl|hg17|chr2 (232471277-232471484) | |
| 1-219, gnl|Hg17|chr2 (232471504-232471280) | |
| 1-219, gnl|loxAfr1|scaffold_42874 (11324-11623) | |
| 1-219, gnl|mm7|chr1 (86482973-86483178) | |
| 1-219, gnl|Mm7|chr1 (86483198-86482976) | |
| 1-219, gnl|oryCun1|scaffold_188937 (7183-7390) | |
| 1-219, gnl|panTro1|chr13 (123101337-123101544) | |
| 1-219, gnl|rheMac2|chr12 (95659705-95659912) | |
| 1-219, gnl|rn3|chr9 (85536067-85536272) | |
| 307-434, gnl|bosTau2|chr2 (73803061-73803188) | |
| 307-434, gnl|canFam2|chr25 (46584823-46584959) | |
| 307-434, gnl|danRer3|chrNA (128960015-128960142) | |
| 307-434, gnl|dasNov1|scaffold_6633 (1068-1204) | |
| 307-434, gnl|echTel1|scaffold_12301 (282-405) | |
| 307-434, gnl|fr1|chrUn (260300834-260300699) | |
| 307-434, gnl|galGal2|chr9 (14696677-14696814) | |
| 307-434, gnl|hg17|chr2 (232428218-232428354) | |
| 307-434, gnl|Hg17|chr2 (232428355-232428228) | |
| 307-434, gnl|loxAfr1|scaffold_163103 (4034-4170) | |
| 307-434, gnl|mm7|chr1 (86447323-86447459) | |
| 307-434, gnl|Mm7|chr1 (86447460-86447333) | |
| 307-434, gnl|monDom2|scaffold_167 (278200-278331) | |
| 307-434, gnl|oryCun1|scaffold_107863 (466-330) | |
| 307-434, gnl|panTro1|chr13 (123058299-123058435) | |
| 307-434, gnl|rheMac2|chr12 (95609965-95610101) | |
| 307-434, gnl|rn3|chr9 (85494589-85494725) | |
| 307-434, gnl|tetNig1|chrUn_random (49746213-49746066) | |
| 307-434, gnl|xenTro1|scaffold_589 (226364-226492) | |
| 542-1133, gnl|bosTau2|chr2 (73806423-73807018) | |
| 542-1133, gnl|canFam2|chr25 (46581965-46581553) | |
| 542-1133, gnl|dasNov1|scaffold_35666 (808-1226) | |
| 542-1133, gnl|hg17|chr13 (66424789-66425217) | |
| 542-1133, gnl|Hg17|chr2 (232423247-232422648) | |
| 542-1133, gnl|loxAfr1|scaffold_163103 (695-279) | |
| 542-1133, gnl|mm7|chr1 (86444097-86443699) | |
| 542-1133, gnl|Mm7|chr1 (86444258-86443694) | |
| 542-1133, gnl|oryCun1|scaffold_102572 (3294-3663) | |
| 542-1133, gnl|panTro1|chr14 (48816858-48817285) | |
| 542-1133, gnl|rheMac2|chr17 (47080873-47081305) | |
| 542-1133, gnl|rn3|chr9 (85491730-85491335) | |
| 738-1088, gnl|bosTau2|chr19 (23375384-23375037) | |
| 738-1088, gnl|Hg17|chr2 (232423050-232422694) | |
| 738-1088, gnl|Mm7|chr1 (86444072-86443735) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-219, gnl|bosTau2|chr2 (73752183-73752408) | |
| 1-219, gnl|canFam2|chr25 (46634220-46634428) | |
| 1-219, gnl|dasNov1|scaffold_6633 (56993-57201) | |
| 1-219, gnl|echTel1|scaffold_310038 (57006-57214) | |
| 1-219, gnl|galGal2|chr9 (14723426-14723659) | |
| 1-219, gnl|hg17|chr2 (232471277-232471484) | |
| 1-219, gnl|Hg17|chr2 (232471504-232471280) | |
| 1-219, gnl|loxAfr1|scaffold_42874 (11324-11623) | |
| 1-219, gnl|mm7|chr1 (86482973-86483178) | |
| 1-219, gnl|Mm7|chr1 (86483198-86482976) | |
| 1-219, gnl|oryCun1|scaffold_188937 (7183-7390) | |
| 1-219, gnl|panTro1|chr13 (123101337-123101544) | |
| 1-219, gnl|rheMac2|chr12 (95659705-95659912) | |
| 1-219, gnl|rn3|chr9 (85536067-85536272) | |
| 307-434, gnl|bosTau2|chr2 (73803061-73803188) | |
| 307-434, gnl|canFam2|chr25 (46584823-46584959) | |
| 307-434, gnl|danRer3|chrNA (128960015-128960142) | |
| 307-434, gnl|dasNov1|scaffold_6633 (1068-1204) | |
| 307-434, gnl|echTel1|scaffold_12301 (282-405) | |
| 307-434, gnl|fr1|chrUn (260300834-260300699) | |
| 307-434, gnl|galGal2|chr9 (14696677-14696814) | |
| 307-434, gnl|hg17|chr2 (232428218-232428354) | |
| 307-434, gnl|Hg17|chr2 (232428355-232428228) | |
| 307-434, gnl|loxAfr1|scaffold_163103 (4034-4170) | |
| 307-434, gnl|mm7|chr1 (86447323-86447459) | |
| 307-434, gnl|Mm7|chr1 (86447460-86447333) | |
| 307-434, gnl|monDom2|scaffold_167 (278200-278331) | |
| 307-434, gnl|oryCun1|scaffold_107863 (466-330) | |
| 307-434, gnl|panTro1|chr13 (123058299-123058435) | |
| 307-434, gnl|rheMac2|chr12 (95609965-95610101) | |
| 307-434, gnl|rn3|chr9 (85494589-85494725) | |
| 307-434, gnl|tetNig1|chrUn_random (49746213-49746066) | |
| 307-434, gnl|xenTro1|scaffold_589 (226364-226492) | |
| 542-1133, gnl|bosTau2|chr2 (73806423-73807018) | |
| 542-1133, gnl|canFam2|chr25 (46581965-46581553) | |
| 542-1133, gnl|dasNov1|scaffold_35666 (808-1226) | |
| 542-1133, gnl|hg17|chr13 (66424789-66425217) | |
| 542-1133, gnl|Hg17|chr2 (232423247-232422648) | |
| 542-1133, gnl|loxAfr1|scaffold_163103 (695-279) | |
| 542-1133, gnl|mm7|chr1 (86444097-86443699) | |
| 542-1133, gnl|Mm7|chr1 (86444258-86443694) | |
| 542-1133, gnl|oryCun1|scaffold_102572 (3294-3663) | |
| 542-1133, gnl|panTro1|chr14 (48816858-48817285) | |
| 542-1133, gnl|rheMac2|chr17 (47080873-47081305) | |
| 542-1133, gnl|rn3|chr9 (85491730-85491335) | |
| 738-1088, gnl|bosTau2|chr19 (23375384-23375037) | |
| 738-1088, gnl|Hg17|chr2 (232423050-232422694) | |
| 738-1088, gnl|Mm7|chr1 (86444072-86443735) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cje (0.330469) | |
| ebs (0.236602) | |
| fcc (0.197785) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| eli (0.151814) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| thg (0.126791) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jca (0.11396) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.330469) | |
| ebs (0.236602) | |
| fcc (0.197785) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| eli (0.151814) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| thg (0.126791) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jca (0.11396) |