Non-Coding RNA Search

Ss1.1-Pig4-TMW8043M20.5

Sequence:


               
               TGGAGATCACAGATGCGGCTCGGATCCGGCATTGCTGTGGCTCTCGTGTAGGCCGGCGGC
TGCAGCTCCGATTCCACCCCTAGCCTGGGAACCTCCATATGCCGCACGTGTGGCCCTTTA
AAAAAAAAAAAAAGTATAAATAAATAAATAAATAAAAACATTATGCCCTCCAAATGGTGA
GGGAGAGTGTAAGATATTCTTCAGCTTTAATTAATTTTTAATTTTATTCAGGTCAGAGCA
CTTTCTTTTTATAGCAATACAACAGGCGAGAGAATACTCAGAAATATTTAAAATTGTATT
TATACCAAGAGTACGTTTTAAGTATTTTCTAATACTTGAGCAGTTGTTGTCCGGCTGGCT
TTCAAACATGCCAAAAGTTAAGCATTCTGTATTTTTCAACACATATGCTTTTTACAGGTT
TATATTCTCTAATAAGAATTCTTAAGTGTTCCCAAAGCAACTGATGTTTACAGGCCTTTT
GTGGATTTCCTCCTTCTTCAGAGGTCTGGGGGACCTACGACAAAGTTACTCGATAAAACA
CTAACGGGGGACTAACTTCTGGTGTAATAAGTGAGTTGGCCACCACCTTGATGTAAAAAT
TTGTAAAGGAACTTTTTCACCATTTTGAGTGTCAAACGTTATTTTTAACTGTCTGGTTTG
TACTTCTATGACTTTTGTACTACCAAAGCTGAGTTCAAAATAAAAATGTTAAACACAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGATCACAGATGCGGCTCGGATCCGGCATTGCTGTGGCTCTCGTGTAGGCCGGCGGC
TGCAGCTCCGATTCCACCCCTAGCCTGGGAACCTCCATATGCCGCACGTGTGGCCCTTTA
AAAAAAAAAAAAAGTATAAATAAATAAATAAATAAAAACATTATGCCCTCCAAATGGTGA
GGGAGAGTGTAAGATATTCTTCAGCTTTAATTAATTTTTAATTTTATTCAGGTCAGAGCA
CTTTCTTTTTATAGCAATACAACAGGCGAGAGAATACTCAGAAATATTTAAAATTGTATT
TATACCAAGAGTACGTTTTAAGTATTTTCTAATACTTGAGCAGTTGTTGTCCGGCTGGCT
TTCAAACATGCCAAAAGTTAAGCATTCTGTATTTTTCAACACATATGCTTTTTACAGGTT
TATATTCTCTAATAAGAATTCTTAAGTGTTCCCAAAGCAACTGATGTTTACAGGCCTTTT
GTGGATTTCCTCCTTCTTCAGAGGTCTGGGGGACCTACGACAAAGTTACTCGATAAAACA
CTAACGGGGGACTAACTTCTGGTGTAATAAGTGAGTTGGCCACCACCTTGATGTAAAAAT
TTGTAAAGGAACTTTTTCACCATTTTGAGTGTCAAACGTTATTTTTAACTGTCTGGTTTG
TACTTCTATGACTTTTGTACTACCAAAGCTGAGTTCAAAATAAAAATGTTAAACACAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               153-717, gnl|bosTau2|chr6 (28780801-28781367)
               

               
               153-717, gnl|Hg17|chr4 (37435388-37434822)
               

               
               153-717, gnl|Mm7|chr5 (63263545-63262973)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               153-717, gnl|bosTau2|chr6 (28780801-28781367)
               

               
               153-717, gnl|Hg17|chr4 (37435388-37434822)
               

               
               153-717, gnl|Mm7|chr5 (63263545-63262973)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               spc (0.566829)
               

               
               pro (0.512033)
               

               
               aor (0.390549)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.566829)
               

               
               pro (0.512033)
               

               
               aor (0.390549)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	153-717, gnl\|bosTau2\|chr6 (28780801-28781367)
	153-717, gnl\|Hg17\|chr4 (37435388-37434822)
	153-717, gnl\|Mm7\|chr5 (63263545-63262973)

	spc (0.566829)
	pro (0.512033)
	aor (0.390549)
	nms (0.213858)
	nlu (0.191681)
	rec (0.17307)
	duo (0.172801)
	ski (0.146735)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)