Non-Coding RNA Search

Ss1.1-Pig4-TMW8043M23.3

Sequence:


               
               CCCTAGCTTGGGAACTTTTATATGCTGCAAGCACAGCCCAAAAAATTTAAAAAAATTCAT
ATTACAGACTGCCCTTCCCCACCCCTTTTAGAGTTTCATGATCGATCACCAGTGTACTAG
TTCCTTCTGCAGTGTGCTATATGTTTTTTCCCTCGATGTCTTCCTTACTTAGGCTGGAAT
GCTTTGCCCTTCTTTGTGTCCATGTGAATACTCATTTTTCCTTTAGGACTCAGCTCCGGT
ATTACTGTATTCATGAAGCTTTTTCCAGCCCTGTTCAGTCAGAGTTACATGGTCCTTTTC
TTCTGCTCCCTGAGTTCTCCCCTCCCAAATTATCACACTGATCACATTGCTTTCTAATCA
CTTTTTTTTAATGAGTTGGTGAACTCCATGTTTTAAACATTTATCTTTATACATAATGCT
TAATGAATGGTAGGCCCTTAGTGATGTTTTTTGAGTTTATAAGAGACATGATTCTTAAAT
ACTAAACTCTGCCCTAAAGGGTTACTGCTGTTGGATTATACACTGCCACACCCTCTATAC
CCATGGTTGACCAGGCTGAGAGGGTATTACTCAGAGGAGTAAAGTATTATTTAGATTTAG
AACCAGAGAAAATAAGAGAACTTTCTCTTCAGAAGCTGGGAACGCCGTATTGTCTTCATG
ACCCTTGTGAACCATTTGGATCTCTGACCAATTGGTACACTAATGAGGGTACAATTGAGT
GCTTTTTATACAACTTTTTCATCCCCCACACAATTGGAAAATAATTTGCAGACCGTAACA
GTTAAATAATGCCTTTTACTGTGATGTATTACAAAGCAATGAGCTACACATTTTTGTGTG
CATTAAAGACTGCTAAGTAAATTCTGTTTCATTTAGAATGGATTAAATAACTTCAACATA
CCAAATCTTCACATAAGGAAAGTACTATAATTCATTCATCAACAACTATTTATTATGTGC
CTACTATATGCCAGGTTTTATCTTAGGCACTGAGGATATACCTTTGTAAAACACCAGAGT
TTGTATTCTAGAGGAGGAAGTTAATTCATTTTAAGGAATGTGTATCGTGTCTGTGGTGAG
TGCTGTGAGGAATAAAGCAGGTATGGGGCTAGTGTAACTCTGGAGAGCAGTGCTGTTTTA
TTCACGGGAGGTGGGAAGGTACCTCTAAAGCACCTATTTACCTGAGCATTTGTGTCTTCA
AGTTCTACCCCTTTGGTTAAATACCATGAAATGTGCCATTGAACATTCAGTATATTCATA
AAGTTTCTCTTATGGAAGTTCTGATGCTGAATTGAATGAATCACTGCTTAAGAACTTAAT
TAGATCACATTTAAAGGTTTTTTTTTTTTTCCAGTGCGGGCTTTATTAATAGGTAAGTGA
TAACGTAAAGGTTTTGTAGCCTTTATTACAGTTGGAGTTTCTCTCCATTTTGAGCTCTTT
GATGGTTACTAAAACTTAAACTGTTAAAGGATTTTTCATAATCCTTAAATTTGTATGATT
GTTTTCCATTATGAATTGTCTCATGTTAACCAGGCTTTGAGACTTGGTTAAAGAGTTTCT
GGCTACTGTTAATTGTATGATGCTGATTAAAATACAATTCATGACTGAAGGCTTTCCCTT
ATTTCTTTGCATGTTGTAGAGTGAGGTGTGAGTCATGGCTACAACTCCCACAATAAAATT
TACATTCCTGCCTTTATAATCCCACTGGGAATTCTCTCTTGTTCAGTAAAGTGGGAACTG
CCTCTAAAGGCATTCTCAGGCTCGTTTTAATGTTATTAAAAACAAAACAAAACAAAATAA
AACACACAGCTGGCTGATGTGCTAGATTTAGATTGCTTGTCGCTTTTCTCTCTCCACCTT
CCAAGGGCTCCTTTTCTCGCTCCCATAAGGATACCCCATATGCCACAGAATACAGGATTC
CACAGTTCTCTAGTATCACCTCCATGTATTTTTTTTTTTTTTAACACAATATGAGCTATC
ACGTTATGGAAGTATTACATTAACATACATTTATGTATCCACAATTAAAGTATGCATTAT
GTATTTGTGCTGCTGTTCTTACTGTTTTGTGTTTTCCAACTTCTAGGAAAATTTTCAAGT
AGAATGTTTTGAAGCATATAAACTTTTAAAAAAAAATAAAATCGTATTTTCCTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTAGCTTGGGAACTTTTATATGCTGCAAGCACAGCCCAAAAAATTTAAAAAAATTCAT
ATTACAGACTGCCCTTCCCCACCCCTTTTAGAGTTTCATGATCGATCACCAGTGTACTAG
TTCCTTCTGCAGTGTGCTATATGTTTTTTCCCTCGATGTCTTCCTTACTTAGGCTGGAAT
GCTTTGCCCTTCTTTGTGTCCATGTGAATACTCATTTTTCCTTTAGGACTCAGCTCCGGT
ATTACTGTATTCATGAAGCTTTTTCCAGCCCTGTTCAGTCAGAGTTACATGGTCCTTTTC
TTCTGCTCCCTGAGTTCTCCCCTCCCAAATTATCACACTGATCACATTGCTTTCTAATCA
CTTTTTTTTAATGAGTTGGTGAACTCCATGTTTTAAACATTTATCTTTATACATAATGCT
TAATGAATGGTAGGCCCTTAGTGATGTTTTTTGAGTTTATAAGAGACATGATTCTTAAAT
ACTAAACTCTGCCCTAAAGGGTTACTGCTGTTGGATTATACACTGCCACACCCTCTATAC
CCATGGTTGACCAGGCTGAGAGGGTATTACTCAGAGGAGTAAAGTATTATTTAGATTTAG
AACCAGAGAAAATAAGAGAACTTTCTCTTCAGAAGCTGGGAACGCCGTATTGTCTTCATG
ACCCTTGTGAACCATTTGGATCTCTGACCAATTGGTACACTAATGAGGGTACAATTGAGT
GCTTTTTATACAACTTTTTCATCCCCCACACAATTGGAAAATAATTTGCAGACCGTAACA
GTTAAATAATGCCTTTTACTGTGATGTATTACAAAGCAATGAGCTACACATTTTTGTGTG
CATTAAAGACTGCTAAGTAAATTCTGTTTCATTTAGAATGGATTAAATAACTTCAACATA
CCAAATCTTCACATAAGGAAAGTACTATAATTCATTCATCAACAACTATTTATTATGTGC
CTACTATATGCCAGGTTTTATCTTAGGCACTGAGGATATACCTTTGTAAAACACCAGAGT
TTGTATTCTAGAGGAGGAAGTTAATTCATTTTAAGGAATGTGTATCGTGTCTGTGGTGAG
TGCTGTGAGGAATAAAGCAGGTATGGGGCTAGTGTAACTCTGGAGAGCAGTGCTGTTTTA
TTCACGGGAGGTGGGAAGGTACCTCTAAAGCACCTATTTACCTGAGCATTTGTGTCTTCA
AGTTCTACCCCTTTGGTTAAATACCATGAAATGTGCCATTGAACATTCAGTATATTCATA
AAGTTTCTCTTATGGAAGTTCTGATGCTGAATTGAATGAATCACTGCTTAAGAACTTAAT
TAGATCACATTTAAAGGTTTTTTTTTTTTTCCAGTGCGGGCTTTATTAATAGGTAAGTGA
TAACGTAAAGGTTTTGTAGCCTTTATTACAGTTGGAGTTTCTCTCCATTTTGAGCTCTTT
GATGGTTACTAAAACTTAAACTGTTAAAGGATTTTTCATAATCCTTAAATTTGTATGATT
GTTTTCCATTATGAATTGTCTCATGTTAACCAGGCTTTGAGACTTGGTTAAAGAGTTTCT
GGCTACTGTTAATTGTATGATGCTGATTAAAATACAATTCATGACTGAAGGCTTTCCCTT
ATTTCTTTGCATGTTGTAGAGTGAGGTGTGAGTCATGGCTACAACTCCCACAATAAAATT
TACATTCCTGCCTTTATAATCCCACTGGGAATTCTCTCTTGTTCAGTAAAGTGGGAACTG
CCTCTAAAGGCATTCTCAGGCTCGTTTTAATGTTATTAAAAACAAAACAAAACAAAATAA
AACACACAGCTGGCTGATGTGCTAGATTTAGATTGCTTGTCGCTTTTCTCTCTCCACCTT
CCAAGGGCTCCTTTTCTCGCTCCCATAAGGATACCCCATATGCCACAGAATACAGGATTC
CACAGTTCTCTAGTATCACCTCCATGTATTTTTTTTTTTTTTAACACAATATGAGCTATC
ACGTTATGGAAGTATTACATTAACATACATTTATGTATCCACAATTAAAGTATGCATTAT
GTATTTGTGCTGCTGTTCTTACTGTTTTGTGTTTTCCAACTTCTAGGAAAATTTTCAAGT
AGAATGTTTTGAAGCATATAAACTTTTAAAAAAAAATAAAATCGTATTTTCCTAAAAAAA

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               52-942, gnl|bosTau2|chr20 (19469279-19468376)
               

               
               52-942, gnl|Hg17|chr5 (41955403-41956282)
               

               
               52-942, gnl|Mm7|chr15 (3811828-3811006)
               


               
               429-814, gnl|bosTau2|chr11 (13041036-13040656)
               

               
               429-814, gnl|Hg17|chr5 (41955798-41956164)
               

               
               429-814, gnl|Mm7|chr15 (3811475-3811113)
               


               
               983-1561, gnl|bosTau2|chr20 (19468200-19467630)
               

               
               983-1561, gnl|Hg17|chr5 (41956324-41956898)
               

               
               983-1561, gnl|Mm7|chr15 (3810898-3810246)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-942, gnl|bosTau2|chr20 (19469279-19468376)
               

               
               52-942, gnl|Hg17|chr5 (41955403-41956282)
               

               
               52-942, gnl|Mm7|chr15 (3811828-3811006)
               


               
               429-814, gnl|bosTau2|chr11 (13041036-13040656)
               

               
               429-814, gnl|Hg17|chr5 (41955798-41956164)
               

               
               429-814, gnl|Mm7|chr15 (3811475-3811113)
               


               
               983-1561, gnl|bosTau2|chr20 (19468200-19467630)
               

               
               983-1561, gnl|Hg17|chr5 (41956324-41956898)
               

               
               983-1561, gnl|Mm7|chr15 (3810898-3810246)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               liv (0.731422)
               

               
               hea (0.408998)
               

               
               kid (0.389206)
               

               
               tbr (0.308356)
               

               
               eru (0.240096)
               

               
               pan (0.23596)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.731422)
               

               
               hea (0.408998)
               

               
               kid (0.389206)
               

               
               tbr (0.308356)
               

               
               eru (0.240096)
               

               
               pan (0.23596)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	52-942, gnl\|bosTau2\|chr20 (19469279-19468376)
	52-942, gnl\|Hg17\|chr5 (41955403-41956282)
	52-942, gnl\|Mm7\|chr15 (3811828-3811006)

	429-814, gnl\|bosTau2\|chr11 (13041036-13040656)
	429-814, gnl\|Hg17\|chr5 (41955798-41956164)
	429-814, gnl\|Mm7\|chr15 (3811475-3811113)

	983-1561, gnl\|bosTau2\|chr20 (19468200-19467630)
	983-1561, gnl\|Hg17\|chr5 (41956324-41956898)
	983-1561, gnl\|Mm7\|chr15 (3810898-3810246)

	liv (0.731422)
	hea (0.408998)
	kid (0.389206)
	tbr (0.308356)
	eru (0.240096)
	pan (0.23596)
	cty (0.20816)
	fli (0.202881)
	sag (0.182715)
	rec (0.17307)
	mga (0.160205)
	lun (0.150489)
	spl (0.143184)
	pty (0.142714)
	nca (0.136874)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	eep (0.122564)
	eje (0.0988338)