Ss1.1-Pig4-TMW8043N14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCTCTGTGTGTGATGAGGGCCTGCGCAGCCTCAAGGGCATTGGGGATGAAGCTCTGCC CACAGTCCTGGTCGGCCTGTTCATCGAACAGCCCACGCCGTTCCTGTCCCTGTTCTTCCA GCGGCTCCTGCGCCTCCAATACCCCCGGAAACGGATGCGGCTTTTCATTCACAACCATGA GCAGCACCACAAGGCTCTAGTGGAGCAGTTCCTGGCAGAGCATGGCGACGAGTACCAGTC CGTGAAACTGGTGGGCCCTGAGGTTCGGGTGGCGAACGCTGACGCCAGGAACATGGGCGC GGACTTGTGCCGGCAGGACCGTAGCTGCACCTACTACTTCAGCGTGGATGCCGACGTGGC CCTGACTGAGCCCAAAACCCTGCGGCTGCTGATCGAGCAGAACAAGAACGTCCTTGCCCC CTTGATGACCCGCCACGGGAGGCTGTGGTCGAACTTCTGGGGGGCACTGAGTGCAGATGG CTACTACGCCCGCTCTGAGGACTACGTGGACATCGTGCAGGGGCGGCGTGTTGGCGTCTG GAATGTGCCCTACATCTCGAACGTGTACCTGATCAAGGGCAGTGCCCTGCGGGCTGAACT GCAGCAGACAGACCTGTTCCACCACAGCAAGCTGGACCCCGACATGGCCTTCTGTGCCAA TATCCGGCAGCAGGACGTGTTCATGTTCCTGACCAACCGGCACGCCTTTGGCCACCTGCT CTCCCTGGACAGCTACCAGACCACCCACCTCCACAACGACCTCTGGGAGGTGTTCAGCAA TCCCGAGGACTGGAAGGAGAAATACATCCACGAGAACTACACCAAGGCCCTGGCGGGGAA GCTGGTGGAGACGCCATGCCCAGACGTCTACTGGTTCCCCATCTTCACCGAGACGGCCTG TGACGAGCTGGTGGAGGAAATGGAGCACTACGGCCAGTGGTCTCTGGGAGACAACAAGGA CAACCGCATCCAGGGTGGCTACGAAAACGTGCCAACCATCGACATCCACATGAACCAGAT CAGCTTTGAGCGGGAGTGGCACAAGTTCCTGGTGGAGTACATCGCCCCCATGACAGAGAA GCTCTACCCGGGCTACTACACCAGGGCCCAGTTCGACCTGGCCTTTGTTGTCCGCTACAA GCCAGATGAGCAGCCCTCGCTGATGCCACACCACGACGCCTCCACCTTCACCATCAACAT TGCCCTGAATCGGGTCGGGGTGGATTACGAGGGCGGAGGCTGTCGCTTCCTGCGCTACAA CTGCTCCATCCGAGCGCCACGGAAAGGCTGGACCCTCATGCACCCTGGGCGACTCACGCA CTACCACGAGGGGCTCCCCACCACCAAAGGCACCCGCTACATCGCCGTCTCCTTCGTCGA TCCCTAAGTGGCCAGACCCGGCCACCTCGGACCTTTTCCTCTGTGTTGACAACCACTGCT CAGCAGCCTTGGGCACCTCGGGGTCCCAGGGACCAGTCCAGCCTCCAGGCTCTTGACCTC TCATTGCTCTTGGAGCCGCCATGGGAGACGGGGCCATAGGCCAGAGGCAGAGCACACCTC CTTGGCTGGGACTTTGCTGGGGCTCTGGACGCAGCCCCGGGAGAAACTGTCCACTTTCCC TGCTTTGCAGCAACTCGTCCTTTCCCACTGAAAGACCCGGTCCTACTTCCTCTGCTTCTT CCAGGGGGCAGCGCTTGAGCAGGTCCAGGGCGGACCCAGCTGCCTGGAGAGACTCTAGGG GCAAGACGCCACGCCTGGCGCTTCTCCCCCACCCCCAGAGCTGCAGCCCCAGGGACATCA GCTTCAAGCTGCAGGGTTGACACCAAGATCTGGATCAGTCTCAAGTCTCCACCCTGACCG TGGGACTGCTGAAGAGCTCTGTTCCTCTGAGACAGTGACTCAGAATACCTCACGGGAGAT AGGAAATGCATTGACGCCACCGCTCCATCCTCTACCTGACCCTTGCTGGGGGGCGGCGCA GGGAGTGGTGTGTCCACACACTGCACTGTGTTCCCCTGCCCTGGATCCCTCTGGAGAGAG GGCCAGACAGAAACAGGAGAGTCTCCATTAAAGGTCATTCAGGAGTTCCAAAAAAAAAAA AGTGGTTAACGAATCCGACTAGGAACCATGAAGTTTCCGGTTCAATCCCTGGCCTTGCTC AGTGGGTTGAGGATCCGGCGTTGCTGTGAGCTGCGGTGTAGGTTGCAGACGCGGCTCGGA TCCCGCGTTGCTGTGGCTCTGGCGTAGGCCAGTGGCTACAGCTCCGATTAGACCCCTAGC CTGGGAACCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCTCTGTGTGTGATGAGGGCCTGCGCAGCCTCAAGGGCATTGGGGATGAAGCTCTGCC CACAGTCCTGGTCGGCCTGTTCATCGAACAGCCCACGCCGTTCCTGTCCCTGTTCTTCCA GCGGCTCCTGCGCCTCCAATACCCCCGGAAACGGATGCGGCTTTTCATTCACAACCATGA GCAGCACCACAAGGCTCTAGTGGAGCAGTTCCTGGCAGAGCATGGCGACGAGTACCAGTC CGTGAAACTGGTGGGCCCTGAGGTTCGGGTGGCGAACGCTGACGCCAGGAACATGGGCGC GGACTTGTGCCGGCAGGACCGTAGCTGCACCTACTACTTCAGCGTGGATGCCGACGTGGC CCTGACTGAGCCCAAAACCCTGCGGCTGCTGATCGAGCAGAACAAGAACGTCCTTGCCCC CTTGATGACCCGCCACGGGAGGCTGTGGTCGAACTTCTGGGGGGCACTGAGTGCAGATGG CTACTACGCCCGCTCTGAGGACTACGTGGACATCGTGCAGGGGCGGCGTGTTGGCGTCTG GAATGTGCCCTACATCTCGAACGTGTACCTGATCAAGGGCAGTGCCCTGCGGGCTGAACT GCAGCAGACAGACCTGTTCCACCACAGCAAGCTGGACCCCGACATGGCCTTCTGTGCCAA TATCCGGCAGCAGGACGTGTTCATGTTCCTGACCAACCGGCACGCCTTTGGCCACCTGCT CTCCCTGGACAGCTACCAGACCACCCACCTCCACAACGACCTCTGGGAGGTGTTCAGCAA TCCCGAGGACTGGAAGGAGAAATACATCCACGAGAACTACACCAAGGCCCTGGCGGGGAA GCTGGTGGAGACGCCATGCCCAGACGTCTACTGGTTCCCCATCTTCACCGAGACGGCCTG TGACGAGCTGGTGGAGGAAATGGAGCACTACGGCCAGTGGTCTCTGGGAGACAACAAGGA CAACCGCATCCAGGGTGGCTACGAAAACGTGCCAACCATCGACATCCACATGAACCAGAT CAGCTTTGAGCGGGAGTGGCACAAGTTCCTGGTGGAGTACATCGCCCCCATGACAGAGAA GCTCTACCCGGGCTACTACACCAGGGCCCAGTTCGACCTGGCCTTTGTTGTCCGCTACAA GCCAGATGAGCAGCCCTCGCTGATGCCACACCACGACGCCTCCACCTTCACCATCAACAT TGCCCTGAATCGGGTCGGGGTGGATTACGAGGGCGGAGGCTGTCGCTTCCTGCGCTACAA CTGCTCCATCCGAGCGCCACGGAAAGGCTGGACCCTCATGCACCCTGGGCGACTCACGCA CTACCACGAGGGGCTCCCCACCACCAAAGGCACCCGCTACATCGCCGTCTCCTTCGTCGA TCCCTAAGTGGCCAGACCCGGCCACCTCGGACCTTTTCCTCTGTGTTGACAACCACTGCT CAGCAGCCTTGGGCACCTCGGGGTCCCAGGGACCAGTCCAGCCTCCAGGCTCTTGACCTC TCATTGCTCTTGGAGCCGCCATGGGAGACGGGGCCATAGGCCAGAGGCAGAGCACACCTC CTTGGCTGGGACTTTGCTGGGGCTCTGGACGCAGCCCCGGGAGAAACTGTCCACTTTCCC TGCTTTGCAGCAACTCGTCCTTTCCCACTGAAAGACCCGGTCCTACTTCCTCTGCTTCTT CCAGGGGGCAGCGCTTGAGCAGGTCCAGGGCGGACCCAGCTGCCTGGAGAGACTCTAGGG GCAAGACGCCACGCCTGGCGCTTCTCCCCCACCCCCAGAGCTGCAGCCCCAGGGACATCA GCTTCAAGCTGCAGGGTTGACACCAAGATCTGGATCAGTCTCAAGTCTCCACCCTGACCG TGGGACTGCTGAAGAGCTCTGTTCCTCTGAGACAGTGACTCAGAATACCTCACGGGAGAT AGGAAATGCATTGACGCCACCGCTCCATCCTCTACCTGACCCTTGCTGGGGGGCGGCGCA GGGAGTGGTGTGTCCACACACTGCACTGTGTTCCCCTGCCCTGGATCCCTCTGGAGAGAG GGCCAGACAGAAACAGGAGAGTCTCCATTAAAGGTCATTCAGGAGTTCCAAAAAAAAAAA AGTGGTTAACGAATCCGACTAGGAACCATGAAGTTTCCGGTTCAATCCCTGGCCTTGCTC AGTGGGTTGAGGATCCGGCGTTGCTGTGAGCTGCGGTGTAGGTTGCAGACGCGGCTCGGA TCCCGCGTTGCTGTGGCTCTGGCGTAGGCCAGTGGCTACAGCTCCGATTAGACCCCTAGC CTGGGAACCTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1574-1798, - strand, RNAz p=0.984901 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1574-1798, - strand, RNAz p=0.984901 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 46-186, gnl|bosTau2|chr16 (21372943-21372801) | |
| 46-186, gnl|canFam2|chr2 (87211331-87211147) | |
| 46-186, gnl|danRer3|chr14 (44633649-44633484) | |
| 46-186, gnl|dasNov1|scaffold_47936 (3497-3368) | |
| 46-186, gnl|echTel1|scaffold_105849 (731-577) | |
| 46-186, gnl|fr1|chrUn (30362244-30362067) | |
| 46-186, gnl|galGal2|chr21 (5252856-5252701) | |
| 46-186, gnl|hg17|chr1 (11952824-11953010) | |
| 46-186, gnl|Hg17|chr1 (11952838-11952980) | |
| 46-186, gnl|loxAfr1|scaffold_16044 (86303-86116) | |
| 46-186, gnl|mm7|chr4 (146915207-146915032) | |
| 46-186, gnl|Mm7|chr4 (146915191-146915049) | |
| 46-186, gnl|monDom2|scaffold_175 (128307-128131) | |
| 46-186, gnl|oryCun1|scaffold_158427 (846-682) | |
| 46-186, gnl|panTro1|chr1 (12157216-12157402) | |
| 46-186, gnl|rheMac2|chr1 (15067271-15067457) | |
| 46-186, gnl|rn3|chr5 (165012317-165012142) | |
| 46-186, gnl|tetNig1|chrUn_random (83938318-83938170) | |
| 403-531, gnl|bosTau2|chr16 (21368042-21367914) | |
| 403-531, gnl|Hg17|chr1 (11958495-11958623) | |
| 403-531, gnl|Mm7|chr4 (146910677-146910549) | |
| 533-674, gnl|bosTau2|chr16 (21367610-21367469) | |
| 533-674, gnl|canFam2|chr2 (87207900-87207725) | |
| 533-674, gnl|danRer3|chr14 (44628825-44628655) | |
| 533-674, gnl|fr1|chrUn (245270824-245270968) | |
| 533-674, gnl|galGal2|chr21 (5250332-5250144) | |
| 533-674, gnl|hg17|chr1 (11958926-11959116) | |
| 533-674, gnl|Hg17|chr1 (11958968-11959109) | |
| 533-674, gnl|loxAfr1|scaffold_132134 (4484-4650) | |
| 533-674, gnl|mm7|chr4 (146909893-146909705) | |
| 533-674, gnl|Mm7|chr4 (146909851-146909710) | |
| 533-674, gnl|monDom2|scaffold_175 (120139-119946) | |
| 533-674, gnl|oryCun1|scaffold_195503 (23478-23304) | |
| 533-674, gnl|panTro1|chr1 (12164094-12164284) | |
| 533-674, gnl|rheMac2|chr1 (15073972-15074161) | |
| 533-674, gnl|rn3|chr5 (165006625-165006437) | |
| 533-674, gnl|tetNig1|chrUn_random (83937531-83937382) | |
| 533-674, gnl|xenTro1|scaffold_348 (844288-844122) | |
| 944-1106, gnl|bosTau2|chr16 (21363225-21363063) | |
| 944-1106, gnl|canFam2|chr2 (87204966-87204777) | |
| 944-1106, gnl|danRer3|chr14 (44624240-44624081) | |
| 944-1106, gnl|dasNov1|scaffold_98633 (4282-4092) | |
| 944-1106, gnl|echTel1|scaffold_295150 (53390-53214) | |
| 944-1106, gnl|fr1|chrUn (245273622-245273794) | |
| 944-1106, gnl|galGal2|chr21 (5248422-5248233) | |
| 944-1106, gnl|hg17|chr1 (11964970-11965159) | |
| 944-1106, gnl|Hg17|chr1 (11964978-11965140) | |
| 944-1106, gnl|loxAfr1|scaffold_683 (103037-102879) | |
| 944-1106, gnl|mm7|chr4 (146905510-146905320) | |
| 944-1106, gnl|Mm7|chr4 (146905500-146905338) | |
| 944-1106, gnl|monDom2|scaffold_175 (109409-109241) | |
| 944-1106, gnl|oryCun1|scaffold_195503 (20646-20460) | |
| 944-1106, gnl|panTro1|chr1 (12170793-12170982) | |
| 944-1106, gnl|rheMac2|chr1 (15080826-15081015) | |
| 944-1106, gnl|rn3|chr5 (165002715-165002525) | |
| 944-1106, gnl|tetNig1|chrUn_random (83936790-83936634) | |
| 944-1106, gnl|xenTro1|scaffold_348 (837333-837175) | |
| 1230-1874, gnl|bosTau2|chr16 (21360564-21359915) | |
| 1230-1874, gnl|Hg17|chr1 (11968974-11969630) | |
| 1230-1874, gnl|Mm7|chr4 (146900418-146899829) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-186, gnl|bosTau2|chr16 (21372943-21372801) | |
| 46-186, gnl|canFam2|chr2 (87211331-87211147) | |
| 46-186, gnl|danRer3|chr14 (44633649-44633484) | |
| 46-186, gnl|dasNov1|scaffold_47936 (3497-3368) | |
| 46-186, gnl|echTel1|scaffold_105849 (731-577) | |
| 46-186, gnl|fr1|chrUn (30362244-30362067) | |
| 46-186, gnl|galGal2|chr21 (5252856-5252701) | |
| 46-186, gnl|hg17|chr1 (11952824-11953010) | |
| 46-186, gnl|Hg17|chr1 (11952838-11952980) | |
| 46-186, gnl|loxAfr1|scaffold_16044 (86303-86116) | |
| 46-186, gnl|mm7|chr4 (146915207-146915032) | |
| 46-186, gnl|Mm7|chr4 (146915191-146915049) | |
| 46-186, gnl|monDom2|scaffold_175 (128307-128131) | |
| 46-186, gnl|oryCun1|scaffold_158427 (846-682) | |
| 46-186, gnl|panTro1|chr1 (12157216-12157402) | |
| 46-186, gnl|rheMac2|chr1 (15067271-15067457) | |
| 46-186, gnl|rn3|chr5 (165012317-165012142) | |
| 46-186, gnl|tetNig1|chrUn_random (83938318-83938170) | |
| 403-531, gnl|bosTau2|chr16 (21368042-21367914) | |
| 403-531, gnl|Hg17|chr1 (11958495-11958623) | |
| 403-531, gnl|Mm7|chr4 (146910677-146910549) | |
| 533-674, gnl|bosTau2|chr16 (21367610-21367469) | |
| 533-674, gnl|canFam2|chr2 (87207900-87207725) | |
| 533-674, gnl|danRer3|chr14 (44628825-44628655) | |
| 533-674, gnl|fr1|chrUn (245270824-245270968) | |
| 533-674, gnl|galGal2|chr21 (5250332-5250144) | |
| 533-674, gnl|hg17|chr1 (11958926-11959116) | |
| 533-674, gnl|Hg17|chr1 (11958968-11959109) | |
| 533-674, gnl|loxAfr1|scaffold_132134 (4484-4650) | |
| 533-674, gnl|mm7|chr4 (146909893-146909705) | |
| 533-674, gnl|Mm7|chr4 (146909851-146909710) | |
| 533-674, gnl|monDom2|scaffold_175 (120139-119946) | |
| 533-674, gnl|oryCun1|scaffold_195503 (23478-23304) | |
| 533-674, gnl|panTro1|chr1 (12164094-12164284) | |
| 533-674, gnl|rheMac2|chr1 (15073972-15074161) | |
| 533-674, gnl|rn3|chr5 (165006625-165006437) | |
| 533-674, gnl|tetNig1|chrUn_random (83937531-83937382) | |
| 533-674, gnl|xenTro1|scaffold_348 (844288-844122) | |
| 944-1106, gnl|bosTau2|chr16 (21363225-21363063) | |
| 944-1106, gnl|canFam2|chr2 (87204966-87204777) | |
| 944-1106, gnl|danRer3|chr14 (44624240-44624081) | |
| 944-1106, gnl|dasNov1|scaffold_98633 (4282-4092) | |
| 944-1106, gnl|echTel1|scaffold_295150 (53390-53214) | |
| 944-1106, gnl|fr1|chrUn (245273622-245273794) | |
| 944-1106, gnl|galGal2|chr21 (5248422-5248233) | |
| 944-1106, gnl|hg17|chr1 (11964970-11965159) | |
| 944-1106, gnl|Hg17|chr1 (11964978-11965140) | |
| 944-1106, gnl|loxAfr1|scaffold_683 (103037-102879) | |
| 944-1106, gnl|mm7|chr4 (146905510-146905320) | |
| 944-1106, gnl|Mm7|chr4 (146905500-146905338) | |
| 944-1106, gnl|monDom2|scaffold_175 (109409-109241) | |
| 944-1106, gnl|oryCun1|scaffold_195503 (20646-20460) | |
| 944-1106, gnl|panTro1|chr1 (12170793-12170982) | |
| 944-1106, gnl|rheMac2|chr1 (15080826-15081015) | |
| 944-1106, gnl|rn3|chr5 (165002715-165002525) | |
| 944-1106, gnl|tetNig1|chrUn_random (83936790-83936634) | |
| 944-1106, gnl|xenTro1|scaffold_348 (837333-837175) | |
| 1230-1874, gnl|bosTau2|chr16 (21360564-21359915) | |
| 1230-1874, gnl|Hg17|chr1 (11968974-11969630) | |
| 1230-1874, gnl|Mm7|chr4 (146900418-146899829) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| amn (0.417711) | |
| csp (0.322373) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ute (0.265569) | |
| cov (0.264306) | |
| eep (0.245128) | |
| eru (0.240096) | |
| nms (0.213858) | |
| nep (0.183925) | |
| ton (0.1755) | |
| duo (0.172801) | |
| nco (0.161734) | |
| nca (0.136874) | |
| cbr (0.127975) | |
| cly (0.120642) | |
| jca (0.11396) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| csp (0.322373) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ute (0.265569) | |
| cov (0.264306) | |
| eep (0.245128) | |
| eru (0.240096) | |
| nms (0.213858) | |
| nep (0.183925) | |
| ton (0.1755) | |
| duo (0.172801) | |
| nco (0.161734) | |
| nca (0.136874) | |
| cbr (0.127975) | |
| cly (0.120642) | |
| jca (0.11396) |