Ss1.1-Pig4-TMW8043N21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATTGCTCCCGCGGCTTGCTTTTCCATTTGGACGTGCTTCTTACTCAAAGCCTAGTCAT CTTCTGATTTGGAAGAATTGAAGTAGACATCTGCATTTTTGTCCCAACGAAACTTGGAAA CAAAATGGCAGAAGACAAAGAGTGCCATAGCGTGGTTGAAGAGGTTCCCAGCAAAAGGAT AATTAAGTTTAATCCTCCGTTATACAAACAACGTTACCAGTTTGTTAAAAATTTAGTGGA GCAACATCAGCCTCAAAAGGTTGCAGACCTAGGGTGTGGTGATCTTTCGCTCCTATCGAT ATTAAAATACCTAAAGTGTGTCACAGAGCTTGTCGGAGTAGACATCAATGAAGGCAGACT TAAATGGAATGGGTCTCGGCTGTCCCCATGTGTGGGGGACCATCTGGATCCCCGCGAGCT GGATTTAGTCATTACCTTGTATCATGGCTCTGTTTTGGAGAAAGACTGTCGTTTGCTCGG ATTTGACTTGGTAACATGTATTGAACTAATAGAACATTTTGATTCAGAAGATCTGGCCAG GTTTCCCGAAGTTGTTTTTGGGTACATGTCTCCAGCCATGATTGTCATCAGCACACCGAA CTCTGATTTCAATTCCCTGTTTCCGCTCTCAGTCTTCAGAGATTCAGATCACAAATTTGA GTGGAGTAGAGTGCAGTTTCAGACCTGGGCTTTAGATGTGGCAAATCGCTATAGCTACTC AGTGGAGTTCACCGGTGTAGGGGAACTGCCGGCAGAAGCTGAGGATGTTGGATATTGTAC CCAGATAGGGGTCTTCCGGAAGAAAGAAAAGACAACTGAATCTGATGTTTTGGAGCACCC TGGCGAACGTGTTTATGAAGTTGTTTATACGACCTCATACCCAAGTTTACAGCAAATAAA TTACCGTAGACGTGTTGTGGTTTATCTGGTATACCGAGAAGTGAACAAAATGAGACTGAG ATACCAAGTGAGTCTGAGGCGGCACGAACTGGAACCTGAGTCCACAGACCCTGACGACCC CAGAAGAAAATTCATCTCAGGCCTTCCAGTTCATACACCCACAGAAGCTGACAAAGCCAT GGCGATGACTCCCCAACCTTTCTGTATTGGAGATAAGTTTTACGTACCCCTGAAAAGAAT CATTGCTTATCCCAGGCTGGGGTACTTATGTGGTAATGTGCAGGAGCTGAGAGAGCTCCT CGCGGACTCAATAGAACTGAACTGTGACGCGTCTGCGGTGAAGGTTGACTTGTATCACTG TAGTGACTACTGCTGACCAGCCTTAGTTCCTGAAATTCAGGGTCTTAGCAATAGTTGGGC TCATTTAAAATGTAAACTTGGGGCCATGATAATTCAGGTAGCTTCATTTTAAAATCACCT AATGTTATTTTGTGTGTGTGTGTGTTGAATGTGACATTAAAGAGTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATTGCTCCCGCGGCTTGCTTTTCCATTTGGACGTGCTTCTTACTCAAAGCCTAGTCAT CTTCTGATTTGGAAGAATTGAAGTAGACATCTGCATTTTTGTCCCAACGAAACTTGGAAA CAAAATGGCAGAAGACAAAGAGTGCCATAGCGTGGTTGAAGAGGTTCCCAGCAAAAGGAT AATTAAGTTTAATCCTCCGTTATACAAACAACGTTACCAGTTTGTTAAAAATTTAGTGGA GCAACATCAGCCTCAAAAGGTTGCAGACCTAGGGTGTGGTGATCTTTCGCTCCTATCGAT ATTAAAATACCTAAAGTGTGTCACAGAGCTTGTCGGAGTAGACATCAATGAAGGCAGACT TAAATGGAATGGGTCTCGGCTGTCCCCATGTGTGGGGGACCATCTGGATCCCCGCGAGCT GGATTTAGTCATTACCTTGTATCATGGCTCTGTTTTGGAGAAAGACTGTCGTTTGCTCGG ATTTGACTTGGTAACATGTATTGAACTAATAGAACATTTTGATTCAGAAGATCTGGCCAG GTTTCCCGAAGTTGTTTTTGGGTACATGTCTCCAGCCATGATTGTCATCAGCACACCGAA CTCTGATTTCAATTCCCTGTTTCCGCTCTCAGTCTTCAGAGATTCAGATCACAAATTTGA GTGGAGTAGAGTGCAGTTTCAGACCTGGGCTTTAGATGTGGCAAATCGCTATAGCTACTC AGTGGAGTTCACCGGTGTAGGGGAACTGCCGGCAGAAGCTGAGGATGTTGGATATTGTAC CCAGATAGGGGTCTTCCGGAAGAAAGAAAAGACAACTGAATCTGATGTTTTGGAGCACCC TGGCGAACGTGTTTATGAAGTTGTTTATACGACCTCATACCCAAGTTTACAGCAAATAAA TTACCGTAGACGTGTTGTGGTTTATCTGGTATACCGAGAAGTGAACAAAATGAGACTGAG ATACCAAGTGAGTCTGAGGCGGCACGAACTGGAACCTGAGTCCACAGACCCTGACGACCC CAGAAGAAAATTCATCTCAGGCCTTCCAGTTCATACACCCACAGAAGCTGACAAAGCCAT GGCGATGACTCCCCAACCTTTCTGTATTGGAGATAAGTTTTACGTACCCCTGAAAAGAAT CATTGCTTATCCCAGGCTGGGGTACTTATGTGGTAATGTGCAGGAGCTGAGAGAGCTCCT CGCGGACTCAATAGAACTGAACTGTGACGCGTCTGCGGTGAAGGTTGACTTGTATCACTG TAGTGACTACTGCTGACCAGCCTTAGTTCCTGAAATTCAGGGTCTTAGCAATAGTTGGGC TCATTTAAAATGTAAACTTGGGGCCATGATAATTCAGGTAGCTTCATTTTAAAATCACCT AATGTTATTTTGTGTGTGTGTGTGTTGAATGTGACATTAAAGAGTTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 372-505, gnl|bosTau2|chr3 (31739793-31739926) | |
| 372-505, gnl|canFam2|chrUn (39348104-39347956) | |
| 372-505, gnl|danRer3|chr20 (42367319-42367178) | |
| 372-505, gnl|dasNov1|scaffold_43014 (9220-9330) | |
| 372-505, gnl|echTel1|scaffold_161871 (3035-3185) | |
| 372-505, gnl|fr1|chrUn (273152479-273152626) | |
| 372-505, gnl|galGal2|chr8 (1210778-1210914) | |
| 372-505, gnl|hg17|chr1 (108909381-108909531) | |
| 372-505, gnl|Hg17|chr1 (108909515-108909382) | |
| 372-505, gnl|loxAfr1|scaffold_17569 (11895-12045) | |
| 372-505, gnl|mm7|chr3 (108772223-108772071) | |
| 372-505, gnl|Mm7|chr3 (108772087-108772220) | |
| 372-505, gnl|monDom2|scaffold_0 (8117638-8117488) | |
| 372-505, gnl|oryCun1|scaffold_181512 (40078-39925) | |
| 372-505, gnl|panTro1|chr1 (107834239-107834389) | |
| 372-505, gnl|rheMac2|chr1 (111653647-111653797) | |
| 372-505, gnl|rn3|chr15 (26991150-26991250) | |
| 372-505, gnl|tetNig1|chr1 (16824933-16825070) | |
| 508-688, gnl|bosTau2|chr3 (31741563-31741743) | |
| 508-688, gnl|Hg17|chr1 (108905873-108905693) | |
| 508-688, gnl|Mm7|chr3 (108775903-108776083) | |
| 863-1428, gnl|bosTau2|chr3 (31742975-31743542) | |
| 863-1428, gnl|Hg17|chr1 (108903655-108902525) | |
| 863-1428, gnl|Mm7|chr3 (108778198-108778688) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 372-505, gnl|bosTau2|chr3 (31739793-31739926) | |
| 372-505, gnl|canFam2|chrUn (39348104-39347956) | |
| 372-505, gnl|danRer3|chr20 (42367319-42367178) | |
| 372-505, gnl|dasNov1|scaffold_43014 (9220-9330) | |
| 372-505, gnl|echTel1|scaffold_161871 (3035-3185) | |
| 372-505, gnl|fr1|chrUn (273152479-273152626) | |
| 372-505, gnl|galGal2|chr8 (1210778-1210914) | |
| 372-505, gnl|hg17|chr1 (108909381-108909531) | |
| 372-505, gnl|Hg17|chr1 (108909515-108909382) | |
| 372-505, gnl|loxAfr1|scaffold_17569 (11895-12045) | |
| 372-505, gnl|mm7|chr3 (108772223-108772071) | |
| 372-505, gnl|Mm7|chr3 (108772087-108772220) | |
| 372-505, gnl|monDom2|scaffold_0 (8117638-8117488) | |
| 372-505, gnl|oryCun1|scaffold_181512 (40078-39925) | |
| 372-505, gnl|panTro1|chr1 (107834239-107834389) | |
| 372-505, gnl|rheMac2|chr1 (111653647-111653797) | |
| 372-505, gnl|rn3|chr15 (26991150-26991250) | |
| 372-505, gnl|tetNig1|chr1 (16824933-16825070) | |
| 508-688, gnl|bosTau2|chr3 (31741563-31741743) | |
| 508-688, gnl|Hg17|chr1 (108905873-108905693) | |
| 508-688, gnl|Mm7|chr3 (108775903-108776083) | |
| 863-1428, gnl|bosTau2|chr3 (31742975-31743542) | |
| 863-1428, gnl|Hg17|chr1 (108903655-108902525) | |
| 863-1428, gnl|Mm7|chr3 (108778198-108778688) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.139256) | |
| nbm (0.0993246) |