Non-Coding RNA Search

Ss1.1-Pig4-TMW8043N24.3

Sequence:


               
               ACCACGTGAGGATACACACAGGGGAAAAGCCATATGTTTGTACAGTCCCTGGATGTGACA
AAAGGTTTACAGAATATTCCAGTTTGTACAAACATCATGTTGTTCACACTCACTCTAAGC
CGTACAACTGTAACCACTGTGGGAAGACATACAAGCAGATCTCAACACTGGCCATGCACA
AACGGACAGCCCACAATGACACCGAGCCCATCGAGGAGGAGCAGGAAGCCTTCTTTGAGC
CTCCCCCAGGTCAAAGCGAAGATGTTCTCAAAGGGTCGCAGATCACATATGTCACAGGTG
TGGAAGGAGACGATGTTGTGTCTACACAGGTGGCCACGGTAACGCAGTCTGGGTTGAGTC
AGCAGGTTACGCTCATATCCCAGGACGGGACTCAGCATGTCAACATATCTCAGGCTGACA
TGCAAGCCATTGGCAACACCATCACGATGGTCACACAGGACGGAACGCCCATCACGGTGC
CTGCTCAGGACGCGGTCATCTCCTCAGCAGGAACACACTCTGTTGCCATGGTGACTGCGG
AGGGTACAGAAGGCCAGCAGGTTGCAATTGTGGCTCAGGATTTGGCAGCATTCCATGCTG
CTTCATCAGAAATGGGGCACCAGCAGCATAGCCATCACTTGGTAACCACAGAAACCAGAC
CTCTGACCTTAGTGGCGACATCCAATGGCACCCAGATTGCAGTTCAGCTTGGAGAACAGC
CATCTCTGGAAGAAGCCATCAGAATAGCATCCAGAATCCAACAAGGAGAAACGCCTGGTT
TGGATGATTAACCCTAGAACAACGGAGCAATAAATGGGGAGGAGCCTTTCATCTCCAGGC
AGCAGAGATGCATGAAGCCCGGGCCCAGGAAGATGAGAAGTTTTCCATTCCTGAAACACT
GTACACTTTTTTATGCAAGAGTGAAGAACGTTTTATTCTTGACACTTTTGTGTATATAAC
CCTTGGAATAGATTTCCCAAACTGATTGTGTACAAGGAAGTATGAAATTAGGGCAATACA
GTAAATTTTTATGTTACTCTTTTACCAGATTGCAAGCTCTGAGAGTCCACATGCAAGACC
AATGGAGTCTTATGGAGTCTTACGATGGATTTTTAACTTCCTGTGAAAATAAATAAAGGC
TGTATCTAAAATGCAAAGGTTCTGTAAGTCAAAACAGTCATAATTCCAGAAGCCGTCATG
GGTAATCAAGGGTGTGAAGCCTGCAGATACTTCCCTCAGCTATAGCAGCGTGTCTGCAGT
TTCTGTTCTGCTGTATGGGTGTCCATTTTTCTTTGTATCCCACGGTTTGAAGACTATTCA
CCATAGTTTTCCATCTCTGTTAAATACCAGCTCTTCAAGCTGAAGTGCTAATTACATTAG
CATGACATTGGATTATGTGTAAAATTACAAAGGTTGGTTATTTAAAATTAAAAAGTTAAA
TCCAGTACTTTGGTTTTTTAACGATTTTCCTTAGTGTTCAGTTCTTTGTTACTGTTTTTT
GTTTGTTTGTTTGTTTTTTTAATGAACCATCAAAAGTTTGACCATAGGCTGGAGCCTGGG
ATGACAGTGCTGTAATTGGAAATGGCTTTACTCTGAAAGTTAGGTTAGTGGGTTGGTGTA
AATTATTTATTTTTGCTTATGTATTTTTGTTTTAAAGCTTATTTGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCACGTGAGGATACACACAGGGGAAAAGCCATATGTTTGTACAGTCCCTGGATGTGACA
AAAGGTTTACAGAATATTCCAGTTTGTACAAACATCATGTTGTTCACACTCACTCTAAGC
CGTACAACTGTAACCACTGTGGGAAGACATACAAGCAGATCTCAACACTGGCCATGCACA
AACGGACAGCCCACAATGACACCGAGCCCATCGAGGAGGAGCAGGAAGCCTTCTTTGAGC
CTCCCCCAGGTCAAAGCGAAGATGTTCTCAAAGGGTCGCAGATCACATATGTCACAGGTG
TGGAAGGAGACGATGTTGTGTCTACACAGGTGGCCACGGTAACGCAGTCTGGGTTGAGTC
AGCAGGTTACGCTCATATCCCAGGACGGGACTCAGCATGTCAACATATCTCAGGCTGACA
TGCAAGCCATTGGCAACACCATCACGATGGTCACACAGGACGGAACGCCCATCACGGTGC
CTGCTCAGGACGCGGTCATCTCCTCAGCAGGAACACACTCTGTTGCCATGGTGACTGCGG
AGGGTACAGAAGGCCAGCAGGTTGCAATTGTGGCTCAGGATTTGGCAGCATTCCATGCTG
CTTCATCAGAAATGGGGCACCAGCAGCATAGCCATCACTTGGTAACCACAGAAACCAGAC
CTCTGACCTTAGTGGCGACATCCAATGGCACCCAGATTGCAGTTCAGCTTGGAGAACAGC
CATCTCTGGAAGAAGCCATCAGAATAGCATCCAGAATCCAACAAGGAGAAACGCCTGGTT
TGGATGATTAACCCTAGAACAACGGAGCAATAAATGGGGAGGAGCCTTTCATCTCCAGGC
AGCAGAGATGCATGAAGCCCGGGCCCAGGAAGATGAGAAGTTTTCCATTCCTGAAACACT
GTACACTTTTTTATGCAAGAGTGAAGAACGTTTTATTCTTGACACTTTTGTGTATATAAC
CCTTGGAATAGATTTCCCAAACTGATTGTGTACAAGGAAGTATGAAATTAGGGCAATACA
GTAAATTTTTATGTTACTCTTTTACCAGATTGCAAGCTCTGAGAGTCCACATGCAAGACC
AATGGAGTCTTATGGAGTCTTACGATGGATTTTTAACTTCCTGTGAAAATAAATAAAGGC
TGTATCTAAAATGCAAAGGTTCTGTAAGTCAAAACAGTCATAATTCCAGAAGCCGTCATG
GGTAATCAAGGGTGTGAAGCCTGCAGATACTTCCCTCAGCTATAGCAGCGTGTCTGCAGT
TTCTGTTCTGCTGTATGGGTGTCCATTTTTCTTTGTATCCCACGGTTTGAAGACTATTCA
CCATAGTTTTCCATCTCTGTTAAATACCAGCTCTTCAAGCTGAAGTGCTAATTACATTAG
CATGACATTGGATTATGTGTAAAATTACAAAGGTTGGTTATTTAAAATTAAAAAGTTAAA
TCCAGTACTTTGGTTTTTTAACGATTTTCCTTAGTGTTCAGTTCTTTGTTACTGTTTTTT
GTTTGTTTGTTTGTTTTTTTAATGAACCATCAAAAGTTTGACCATAGGCTGGAGCCTGGG
ATGACAGTGCTGTAATTGGAAATGGCTTTACTCTGAAAGTTAGGTTAGTGGGTTGGTGTA
AATTATTTATTTTTGCTTATGTATTTTTGTTTTAAAGCTTATTTGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H4D4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H4D4_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-251, gnl|bosTau2|chr15 (25827566-25827797)
               

               
               20-251, gnl|Hg17|chr11 (9486740-9486971)
               

               
               20-251, gnl|Mm7|chr7 (106001382-106001613)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-251, gnl|bosTau2|chr15 (25827566-25827797)
               

               
               20-251, gnl|Hg17|chr11 (9486740-9486971)
               

               
               20-251, gnl|Mm7|chr7 (106001382-106001613)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ski (0.29347)
               

               
               cte (0.29274)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               med (0.116252)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               med (0.116252)

	20-251, gnl\|bosTau2\|chr15 (25827566-25827797)
	20-251, gnl\|Hg17\|chr11 (9486740-9486971)
	20-251, gnl\|Mm7\|chr7 (106001382-106001613)

	ski (0.29347)
	cte (0.29274)
	lyg (0.266205)
	bla (0.248694)
	tra (0.246184)
	hea (0.204499)
	rec (0.17307)
	duo (0.172801)
	tbr (0.154178)
	ssp (0.13552)
	med (0.116252)