Non-Coding RNA Search

Ss1.1-Pig4-TMW8043O02.3

Sequence:


               
               CTTCCACTGGCATGGGCCCGGGTTCTCGGAGGTGATCTACGGCCGCAAGCGCTGGTTCCT
GTATCCCCCTGAGAAGACACCCGAGTTCCATCCCAACAAGACCACACTGGCTTGGCTCCG
GGACACATACCCAGCCCTGGCACCATCTGCACGGCCCCTGGAATGCACCATCCAGGCCGG
TGAGGTGCTGTATTTCCCTGACCGATGGTGGCACGCCACACTCAACCTTGACATCAGCGT
CTTCATCTCTACGTTCCTCAGCTAACCCAGGGGGTGGCTGGTAAGCCGTTGCACACCAGC
ACACGCCCCCATAGTGCTCACAGATTTTATTACAGGGACAGTGGTGGCAGCAGCAACCTC
GGCCTGGCCCACCCTCACCTGCCGCTTCTGGCACAGGAGGATGGGGGAGCCTCATGGCCC
AGCAGAACTGGTGGGGCTGGGGCTGGGGATACCAGGGTGGGGATCCAGGGACACGAACTA
TGTACAGAGGCTAGGGGCTGCTGCCCCAAGGCCCTCCCAAGAAGCCAGGATACTGGGCAG
GGTGGGTGAGGGGCCCACCCACTTGCCCTGCCTCAGTAGTCCTCCACCCAGCCATTCTCC
GAGATGAACGCATCAATGACCTCCTTCATGGCCAGGTTGGGGATGAGCTGTTCCTGGGTC
AGGGGGCTCCGAGTCACAGGGTCAAAGTGGCCCACGCGCTGCAGGTGCTCCTCAATGTCC
TTGCGGTCATAGGTGATGCCACTGGGCGTGATGCACGGCTCCCGCATCAGCTCGAAGCTG
ATCTTGCCACACAGGTAGTCAGGGATGTCTCGCTTCTTTCTCTTCTCATCCACCTGGGAG
AAGAGCTCATCCATGTCTGCCAAGTACTTATCATGCTTGGCCTCGATGCAGGCCTGCTGG
GCCCGGATGTGGCCGTCATCCTCTTCACCCTCGTGGTTCCGCTGACACTCTTCCAGCTCC
CTCTCACGCTCAGCCACAATGAGTCGAGTGAGGTAAGAGTGCAGCTCGTTCTCCTGGTGG
ATGCGCCGCTCCTCGATGCTGTTCCAGCGTTTCTTCTTGGCAATGCGCAAAGCACTGGGG
ATGTCATCCCCAAAATTGAGCCGCTGCTCCTTGGCCAGGTTGTAGGCTCGCTGCAGGTTG
GCAATAGCCTCATCATAGCTCTCCATCTCCAACTGGCACTGCCCCAGGAAGAAGTGTGCT
TTCACAGACTGGCTGTCCAGTTCCAGGGCGCGCCGGCAGTCAGCCAGGGCTTGCTCGTGC
TGCTGCATCTTCAGGTAGCACAGTGCCCGGTTGGTGTAATACACTGCCACCAAGGGATTC
CGGGTGATGGCGCGGCCGTAGCAGGCCGCCGCCTCCGGGTACTTGCGGCCCACGAAGAGC
CGGTTGCCCTGCTCCTTTAGCTCCTGCGCGCTCGGGCTCTTCTCCGGGCTGCCGCCGCCG
GCGCCCAGCCGCGCGCCGCTCTCCTTCTCCTCCTTGCCCTTCATGGCGCCGCGCGGCACG
GCCTGGGCTCCGCTCCCAGGCTCCGCGCCCGGCCCGCCCAGCGCCCGCACCCCGAGCCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCACTGGCATGGGCCCGGGTTCTCGGAGGTGATCTACGGCCGCAAGCGCTGGTTCCT
GTATCCCCCTGAGAAGACACCCGAGTTCCATCCCAACAAGACCACACTGGCTTGGCTCCG
GGACACATACCCAGCCCTGGCACCATCTGCACGGCCCCTGGAATGCACCATCCAGGCCGG
TGAGGTGCTGTATTTCCCTGACCGATGGTGGCACGCCACACTCAACCTTGACATCAGCGT
CTTCATCTCTACGTTCCTCAGCTAACCCAGGGGGTGGCTGGTAAGCCGTTGCACACCAGC
ACACGCCCCCATAGTGCTCACAGATTTTATTACAGGGACAGTGGTGGCAGCAGCAACCTC
GGCCTGGCCCACCCTCACCTGCCGCTTCTGGCACAGGAGGATGGGGGAGCCTCATGGCCC
AGCAGAACTGGTGGGGCTGGGGCTGGGGATACCAGGGTGGGGATCCAGGGACACGAACTA
TGTACAGAGGCTAGGGGCTGCTGCCCCAAGGCCCTCCCAAGAAGCCAGGATACTGGGCAG
GGTGGGTGAGGGGCCCACCCACTTGCCCTGCCTCAGTAGTCCTCCACCCAGCCATTCTCC
GAGATGAACGCATCAATGACCTCCTTCATGGCCAGGTTGGGGATGAGCTGTTCCTGGGTC
AGGGGGCTCCGAGTCACAGGGTCAAAGTGGCCCACGCGCTGCAGGTGCTCCTCAATGTCC
TTGCGGTCATAGGTGATGCCACTGGGCGTGATGCACGGCTCCCGCATCAGCTCGAAGCTG
ATCTTGCCACACAGGTAGTCAGGGATGTCTCGCTTCTTTCTCTTCTCATCCACCTGGGAG
AAGAGCTCATCCATGTCTGCCAAGTACTTATCATGCTTGGCCTCGATGCAGGCCTGCTGG
GCCCGGATGTGGCCGTCATCCTCTTCACCCTCGTGGTTCCGCTGACACTCTTCCAGCTCC
CTCTCACGCTCAGCCACAATGAGTCGAGTGAGGTAAGAGTGCAGCTCGTTCTCCTGGTGG
ATGCGCCGCTCCTCGATGCTGTTCCAGCGTTTCTTCTTGGCAATGCGCAAAGCACTGGGG
ATGTCATCCCCAAAATTGAGCCGCTGCTCCTTGGCCAGGTTGTAGGCTCGCTGCAGGTTG
GCAATAGCCTCATCATAGCTCTCCATCTCCAACTGGCACTGCCCCAGGAAGAAGTGTGCT
TTCACAGACTGGCTGTCCAGTTCCAGGGCGCGCCGGCAGTCAGCCAGGGCTTGCTCGTGC
TGCTGCATCTTCAGGTAGCACAGTGCCCGGTTGGTGTAATACACTGCCACCAAGGGATTC
CGGGTGATGGCGCGGCCGTAGCAGGCCGCCGCCTCCGGGTACTTGCGGCCCACGAAGAGC
CGGTTGCCCTGCTCCTTTAGCTCCTGCGCGCTCGGGCTCTTCTCCGGGCTGCCGCCGCCG
GCGCCCAGCCGCGCGCCGCTCTCCTTCTCCTCCTTGCCCTTCATGGCGCCGCGCGGCACG
GCCTGGGCTCCGCTCCCAGGCTCCGCGCCCGGCCCGCCCAGCGCCCGCACCCCGAGCCCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61866000|ref|XP_580708.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61866000|ref|XP_580708.1|

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               80-704, gnl|bosTau2|chr25 (1214837-1215462)
               


               
               1127-1325, gnl|bosTau2|chr25 (1216471-1216669)
               

               
               1127-1325, gnl|Hg17|chr16 (671351-671153)
               

               
               1127-1325, gnl|Mm7|chr17 (24015286-24015484)
               


               
               1326-1560, gnl|bosTau2|chr25 (1217161-1217395)
               

               
               1326-1560, gnl|Hg17|chr16 (670685-670438)
               

               
               1326-1560, gnl|Mm7|chr17 (24015932-24016154)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-704, gnl|bosTau2|chr25 (1214837-1215462)
               


               
               1127-1325, gnl|bosTau2|chr25 (1216471-1216669)
               

               
               1127-1325, gnl|Hg17|chr16 (671351-671153)
               

               
               1127-1325, gnl|Mm7|chr17 (24015286-24015484)
               


               
               1326-1560, gnl|bosTau2|chr25 (1217161-1217395)
               

               
               1326-1560, gnl|Hg17|chr16 (670685-670438)
               

               
               1326-1560, gnl|Mm7|chr17 (24015932-24016154)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

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               cov (0.396458)
               

               
               fhi (0.339155)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               ste (0.270416)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               fhi (0.339155)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               ste (0.270416)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	80-704, gnl\|bosTau2\|chr25 (1214837-1215462)

	1127-1325, gnl\|bosTau2\|chr25 (1216471-1216669)
	1127-1325, gnl\|Hg17\|chr16 (671351-671153)
	1127-1325, gnl\|Mm7\|chr17 (24015286-24015484)

	1326-1560, gnl\|bosTau2\|chr25 (1217161-1217395)
	1326-1560, gnl\|Hg17\|chr16 (670685-670438)
	1326-1560, gnl\|Mm7\|chr17 (24015932-24016154)

	cov (0.396458)
	fhi (0.339155)
	tbr (0.308356)
	sme (0.305437)
	cte (0.29274)
	ste (0.270416)
	pgl (0.236967)
	ebs (0.236602)
	ecc (0.23007)
	ece (0.229305)
	fli (0.202881)
	fcc (0.197785)
	ton (0.1755)
	fbs (0.175346)
	duo (0.172801)
	cki (0.165235)
	cli (0.152812)
	cag (0.151194)
	lin (0.145603)
	hyp (0.142837)
	ssp (0.13552)
	bla (0.124347)
	med (0.116252)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)