Non-Coding RNA Search

Ss1.1-Pig4-TMW8043O03.3

Sequence:


               
               CCGGAAGCGCCTCGTCCTGGGAGGTGGTGGCGGCGGTCGCCGTGATGCCTGCGGGGCTGG
GCGGCTGACGGTGGCGTAGAAGTGGGCCCCGAGCCCTGAGTCTCGGCGGCCGCTGTTGTA
GAGCGGCCTCCGCCATGGCCACCTCCGCCGCCTCCTCGGAGCATTTCGAGAAACTGCACG
AGATCTTCCGCGGCCTCCATGAAGACCTACGAGGGGTGCCGGAGCGGCTCCTGGGGATAG
CAGGGACAGAAGAGAAGAAGAAATTGATCAGAGATTTTGATGAAAAGCAACAAGAAGCAA
ATGAAACGCTGGCAGAGATGGAAGAGGAACTACGTTATGCACCCCTGTCCTTTCGTAACC
CTATGATGTCTAAGCTTCGAACCTACCGTAAGGACCTTGCCAAGCTCCATCGGGAAGTGA
GAAGCACACCTTTGACAGCCGCACCTGGGGGCCGAGGAGACATGAAATATGGTACATACG
CTGTAGAGGATGAGCATATGAATCGGCTACAGTCTCAAAGAGTATTGCTTCTGCAAGGCA
CTGACAGCCTGAACCGGGCCACCCAGAGCATTGAGCGTTCTCATCGGATTGCCGCGGAGA
CTGACCAGATTGGCTCAGAAATCATAGAAGAGCTGGGAGAGCAGCGTGACCAGTTGGAAC
GTACCAAGAGTAGACTGGTAAACACCAGTGAAAACTTGAGCAAAAGTCGGAAGATTCTCC
GTTCAATGTCCAGAAAAGTGACAACCAACAAGCTGCTGCTTTCCATCGTCATCTTACTGG
AGCTAGCCATCCTTGGAGGCCTGGTTTATTACAAATTCTTTCGCAGGCTGTGAACCTCCT
ACAGGGAAGGTTTTGTGGACCAGAACTTGGACTCTGTGAATGAATGGTGTTAGAGGTGTG
GAGAAATCATATCGCTGCTATGAGCTAATGGTTCAAGAAGGCACTGTGTAGCCAGACTGT
GGGAGAAAGGGGCACGACGGAAAACCACTTAAATGTGAAGGAACAGCAATAAGACAAGTG
TGATATACCAAGGTAATAAATGCTGTTTATGACTTCAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGAAGCGCCTCGTCCTGGGAGGTGGTGGCGGCGGTCGCCGTGATGCCTGCGGGGCTGG
GCGGCTGACGGTGGCGTAGAAGTGGGCCCCGAGCCCTGAGTCTCGGCGGCCGCTGTTGTA
GAGCGGCCTCCGCCATGGCCACCTCCGCCGCCTCCTCGGAGCATTTCGAGAAACTGCACG
AGATCTTCCGCGGCCTCCATGAAGACCTACGAGGGGTGCCGGAGCGGCTCCTGGGGATAG
CAGGGACAGAAGAGAAGAAGAAATTGATCAGAGATTTTGATGAAAAGCAACAAGAAGCAA
ATGAAACGCTGGCAGAGATGGAAGAGGAACTACGTTATGCACCCCTGTCCTTTCGTAACC
CTATGATGTCTAAGCTTCGAACCTACCGTAAGGACCTTGCCAAGCTCCATCGGGAAGTGA
GAAGCACACCTTTGACAGCCGCACCTGGGGGCCGAGGAGACATGAAATATGGTACATACG
CTGTAGAGGATGAGCATATGAATCGGCTACAGTCTCAAAGAGTATTGCTTCTGCAAGGCA
CTGACAGCCTGAACCGGGCCACCCAGAGCATTGAGCGTTCTCATCGGATTGCCGCGGAGA
CTGACCAGATTGGCTCAGAAATCATAGAAGAGCTGGGAGAGCAGCGTGACCAGTTGGAAC
GTACCAAGAGTAGACTGGTAAACACCAGTGAAAACTTGAGCAAAAGTCGGAAGATTCTCC
GTTCAATGTCCAGAAAAGTGACAACCAACAAGCTGCTGCTTTCCATCGTCATCTTACTGG
AGCTAGCCATCCTTGGAGGCCTGGTTTATTACAAATTCTTTCGCAGGCTGTGAACCTCCT
ACAGGGAAGGTTTTGTGGACCAGAACTTGGACTCTGTGAATGAATGGTGTTAGAGGTGTG
GAGAAATCATATCGCTGCTATGAGCTAATGGTTCAAGAAGGCACTGTGTAGCCAGACTGT
GGGAGAAAGGGGCACGACGGAAAACCACTTAAATGTGAAGGAACAGCAATAAGACAAGTG
TGATATACCAAGGTAATAAATGCTGTTTATGACTTCAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6R6K8_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6R6K8_PIG

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-254, gnl|bosTau2|chr10 (53663996-53663743)
               

               
               1-254, gnl|Hg17|chr14 (67211096-67210840)
               

               
               1-254, gnl|Mm7|chr12 (77130937-77130692)
               


               
               308-500, gnl|bosTau2|chr10 (53651548-53651356)
               

               
               308-500, gnl|Hg17|chr14 (67196393-67196201)
               

               
               308-500, gnl|Mm7|chr12 (77123617-77123425)
               


               
               737-1050, gnl|bosTau2|chr10 (53645909-53645595)
               

               
               737-1050, gnl|Hg17|chr14 (67187951-67187631)
               

               
               737-1050, gnl|Mm7|chr12 (77115048-77114747)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-254, gnl|bosTau2|chr10 (53663996-53663743)
               

               
               1-254, gnl|Hg17|chr14 (67211096-67210840)
               

               
               1-254, gnl|Mm7|chr12 (77130937-77130692)
               


               
               308-500, gnl|bosTau2|chr10 (53651548-53651356)
               

               
               308-500, gnl|Hg17|chr14 (67196393-67196201)
               

               
               308-500, gnl|Mm7|chr12 (77123617-77123425)
               


               
               737-1050, gnl|bosTau2|chr10 (53645909-53645595)
               

               
               737-1050, gnl|Hg17|chr14 (67187951-67187631)
               

               
               737-1050, gnl|Mm7|chr12 (77115048-77114747)

Expressed library(ies): 35 entry(ies)

More info

Expressed library(ies): 35 entry(ies)

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               cbe (0.717703)
               

               
               che (0.545256)
               

               
               fbs (0.526039)
               

               
               clu (0.478583)
               

               
               ebs (0.473205)
               

               
               hyp (0.42851)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               che (0.545256)
               

               
               fbs (0.526039)
               

               
               clu (0.478583)
               

               
               ebs (0.473205)
               

               
               hyp (0.42851)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-254, gnl\|bosTau2\|chr10 (53663996-53663743)
	1-254, gnl\|Hg17\|chr14 (67211096-67210840)
	1-254, gnl\|Mm7\|chr12 (77130937-77130692)

	308-500, gnl\|bosTau2\|chr10 (53651548-53651356)
	308-500, gnl\|Hg17\|chr14 (67196393-67196201)
	308-500, gnl\|Mm7\|chr12 (77123617-77123425)

	737-1050, gnl\|bosTau2\|chr10 (53645909-53645595)
	737-1050, gnl\|Hg17\|chr14 (67187951-67187631)
	737-1050, gnl\|Mm7\|chr12 (77115048-77114747)

	cbe (0.717703)
	che (0.545256)
	fbs (0.526039)
	clu (0.478583)
	ebs (0.473205)
	hyp (0.42851)
	vin (0.332557)
	mga (0.32041)
	cst (0.280073)
	ssp (0.271039)
	lyg (0.266205)
	ece (0.229305)
	tes (0.207814)
	cmu (0.186393)
	sto (0.179824)
	ton (0.1755)
	cut (0.169924)
	cje (0.165235)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	cag (0.151194)
	isp (0.150376)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	spc (0.113366)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)