Ss1.1-Pig4-TMW8043O06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGATCGGCATCTCCTGTCTTTTCCCTGCTTCCTGGCATTTCAGCATCTCTCCAGTGG GGTGCCCTCGAATTCTGAACACCAACTTACGCCAGATTATTGTTGTTAGCATTCTGGCTG CTGCTGTTTCACTTCTATACTTTTCCGTTGTTATAATCCGAAATAAGTACGGGCGGCTCT CCAGAGACAAGAAGTTTCAAAAGTACTTGGCACGAGTCACTGACATTGAAGCTACAGACA CCAACAACCCCAATGTGAACTACGGGATCGTGGTGGACTGTGGTAGCAGCGGGTCCCGGA TATTTGTCTACTGCTGGCCCAGACATAATGGCAATCCTCATGATCTGCTGGACATCAGAC AAATGAGGGACAAAAACCGCAAGCCTGTGGTTATGAAAATAAAGCCTGGCATTTCAGAAT TTGCTACCTCTCCAGAGAAAGTCAGTGATTACATTTCTCCACTCTTGAACTTTGCTGCAG AGCATGTACCACGGGCAAAGCACAAAGAAACCCCTCTCTACATTCTCTGTACAGCTGGAA TGAGAATCCTCCCCGAAAGCCAGCAGAAAGCCATTCTGGAAGACCTTCTGACCGACATCC CTGTGCACTTTGACTTTCTGTTTTCTGACTCTCATGCAGAAGTAATTTCAGGGAAACAAG AAGGTGTGTATGCTTGGATTGGCATTAATTTTGTCCTTGGACGATTTGAGCATATTGAAG ATGATGATGAGGCAGTTGTAGAAGTTAACATCCCTGGTAGTGAAAGCAGCGAAGCCATCC TCCGGAAAAGAACAGCCGGTATTCTCGACATGGGAGGCGTGTCGACCCAGATAGCATACG AAGTCCCCAAAACTGTAAGCTTTGCCTCCTCACAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGATCGGCATCTCCTGTCTTTTCCCTGCTTCCTGGCATTTCAGCATCTCTCCAGTGG GGTGCCCTCGAATTCTGAACACCAACTTACGCCAGATTATTGTTGTTAGCATTCTGGCTG CTGCTGTTTCACTTCTATACTTTTCCGTTGTTATAATCCGAAATAAGTACGGGCGGCTCT CCAGAGACAAGAAGTTTCAAAAGTACTTGGCACGAGTCACTGACATTGAAGCTACAGACA CCAACAACCCCAATGTGAACTACGGGATCGTGGTGGACTGTGGTAGCAGCGGGTCCCGGA TATTTGTCTACTGCTGGCCCAGACATAATGGCAATCCTCATGATCTGCTGGACATCAGAC AAATGAGGGACAAAAACCGCAAGCCTGTGGTTATGAAAATAAAGCCTGGCATTTCAGAAT TTGCTACCTCTCCAGAGAAAGTCAGTGATTACATTTCTCCACTCTTGAACTTTGCTGCAG AGCATGTACCACGGGCAAAGCACAAAGAAACCCCTCTCTACATTCTCTGTACAGCTGGAA TGAGAATCCTCCCCGAAAGCCAGCAGAAAGCCATTCTGGAAGACCTTCTGACCGACATCC CTGTGCACTTTGACTTTCTGTTTTCTGACTCTCATGCAGAAGTAATTTCAGGGAAACAAG AAGGTGTGTATGCTTGGATTGGCATTAATTTTGTCCTTGGACGATTTGAGCATATTGAAG ATGATGATGAGGCAGTTGTAGAAGTTAACATCCCTGGTAGTGAAAGCAGCGAAGCCATCC TCCGGAAAAGAACAGCCGGTATTCTCGACATGGGAGGCGTGTCGACCCAGATAGCATACG AAGTCCCCAAAACTGTAAGCTTTGCCTCCTCACAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 558-671, - strand, RNAz p=0.654193 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 558-671, - strand, RNAz p=0.654193 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-412, gnl|bosTau2|chr22 (37542153-37541743) | |
| 1-412, gnl|Hg17|chr8 (23363354-23361134) | |
| 1-412, gnl|Mm7|chr14 (64211615-64213456) | |
| 558-671, gnl|bosTau2|chr8 (37499122-37499235) | |
| 558-671, gnl|canFam2|chr25 (37035405-37035268) | |
| 558-671, gnl|danRer3|chrNA (231230683-231230551) | |
| 558-671, gnl|dasNov1|scaffold_96207 (6029-6166) | |
| 558-671, gnl|echTel1|scaffold_55010 (713-850) | |
| 558-671, gnl|fr1|chrUn (311466889-311467014) | |
| 558-671, gnl|galGal2|chr22 (1179890-1179750) | |
| 558-671, gnl|hg17|chr8 (23357302-23357439) | |
| 558-671, gnl|Hg17|chr8 (23357413-23357300) | |
| 558-671, gnl|loxAfr1|scaffold_229936 (361-487) | |
| 558-671, gnl|mm7|chr14 (64218049-64217913) | |
| 558-671, gnl|Mm7|chr14 (64217936-64218049) | |
| 558-671, gnl|monDom2|scaffold_61 (9791417-9791300) | |
| 558-671, gnl|oryCun1|scaffold_199875 (8828-8965) | |
| 558-671, gnl|panTro1|chr7 (24301967-24302104) | |
| 558-671, gnl|rheMac2|chr8 (23543350-23543487) | |
| 558-671, gnl|rn3|chr15 (49960830-49960694) | |
| 558-671, gnl|tetNig1|chr12 (846947-847070) | |
| 558-671, gnl|xenTro1|scaffold_763 (293868-293735) | |
| 723-876, gnl|bosTau2|chr8 (37506286-37506439) | |
| 723-876, gnl|canFam2|chr25 (37041005-37040908) | |
| 723-876, gnl|dasNov1|scaffold_96207 (3973-4070) | |
| 723-876, gnl|echTel1|scaffold_322789 (8617-8714) | |
| 723-876, gnl|fr1|chrUn (311466444-311466541) | |
| 723-876, gnl|galGal2|chr22 (1180938-1180841) | |
| 723-876, gnl|hg17|chr8 (23355026-23355123) | |
| 723-876, gnl|Hg17|chr8 (23355182-23355029) | |
| 723-876, gnl|loxAfr1|scaffold_24168 (33484-33387) | |
| 723-876, gnl|mm7|chr14 (64219696-64219599) | |
| 723-876, gnl|Mm7|chr14 (64219538-64219691) | |
| 723-876, gnl|monDom2|scaffold_61 (9794887-9794790) | |
| 723-876, gnl|oryCun1|scaffold_199875 (6028-6125) | |
| 723-876, gnl|panTro1|chr7 (24299674-24299771) | |
| 723-876, gnl|rheMac2|chr8 (23541041-23541138) | |
| 723-876, gnl|rn3|chr15 (49962472-49962375) | |
| 723-876, gnl|xenTro1|scaffold_763 (295675-295578) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-412, gnl|bosTau2|chr22 (37542153-37541743) | |
| 1-412, gnl|Hg17|chr8 (23363354-23361134) | |
| 1-412, gnl|Mm7|chr14 (64211615-64213456) | |
| 558-671, gnl|bosTau2|chr8 (37499122-37499235) | |
| 558-671, gnl|canFam2|chr25 (37035405-37035268) | |
| 558-671, gnl|danRer3|chrNA (231230683-231230551) | |
| 558-671, gnl|dasNov1|scaffold_96207 (6029-6166) | |
| 558-671, gnl|echTel1|scaffold_55010 (713-850) | |
| 558-671, gnl|fr1|chrUn (311466889-311467014) | |
| 558-671, gnl|galGal2|chr22 (1179890-1179750) | |
| 558-671, gnl|hg17|chr8 (23357302-23357439) | |
| 558-671, gnl|Hg17|chr8 (23357413-23357300) | |
| 558-671, gnl|loxAfr1|scaffold_229936 (361-487) | |
| 558-671, gnl|mm7|chr14 (64218049-64217913) | |
| 558-671, gnl|Mm7|chr14 (64217936-64218049) | |
| 558-671, gnl|monDom2|scaffold_61 (9791417-9791300) | |
| 558-671, gnl|oryCun1|scaffold_199875 (8828-8965) | |
| 558-671, gnl|panTro1|chr7 (24301967-24302104) | |
| 558-671, gnl|rheMac2|chr8 (23543350-23543487) | |
| 558-671, gnl|rn3|chr15 (49960830-49960694) | |
| 558-671, gnl|tetNig1|chr12 (846947-847070) | |
| 558-671, gnl|xenTro1|scaffold_763 (293868-293735) | |
| 723-876, gnl|bosTau2|chr8 (37506286-37506439) | |
| 723-876, gnl|canFam2|chr25 (37041005-37040908) | |
| 723-876, gnl|dasNov1|scaffold_96207 (3973-4070) | |
| 723-876, gnl|echTel1|scaffold_322789 (8617-8714) | |
| 723-876, gnl|fr1|chrUn (311466444-311466541) | |
| 723-876, gnl|galGal2|chr22 (1180938-1180841) | |
| 723-876, gnl|hg17|chr8 (23355026-23355123) | |
| 723-876, gnl|Hg17|chr8 (23355182-23355029) | |
| 723-876, gnl|loxAfr1|scaffold_24168 (33484-33387) | |
| 723-876, gnl|mm7|chr14 (64219696-64219599) | |
| 723-876, gnl|Mm7|chr14 (64219538-64219691) | |
| 723-876, gnl|monDom2|scaffold_61 (9794887-9794790) | |
| 723-876, gnl|oryCun1|scaffold_199875 (6028-6125) | |
| 723-876, gnl|panTro1|chr7 (24299674-24299771) | |
| 723-876, gnl|rheMac2|chr8 (23541041-23541138) | |
| 723-876, gnl|rn3|chr15 (49962472-49962375) | |
| 723-876, gnl|xenTro1|scaffold_763 (295675-295578) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) |