Ss1.1-Pig4-TMW8043O11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGCTGCTGGTGCTGCTGCTGCTCTGCCG CTGCCGCCGCGGCTGCTCGGGCTGTGAGCGCCCAGGAACAGGCCGCCGCGCGCCGCTCTC GGACCCGCAGCCCCCGCCCGCCCTGCCGGGTCGGGCGGCCCAGGGCTGCACCCTTCTATT CCTCCCTGGCCACAACCCTCCCGTCACAGTTGAGCACCTGTTTGCCTGAAGGTGATTTCC AGAAGCAGGAGTCCCCAGAGCTGGCCAGGGGATGAACCGCGAGGGGGCCCCCGGGAAGAG TCCGGAGGAGATGTACATTCAGCAGAAGGTCCGAGTGCTGCTCATGCTGAGGAAGATGGG CTCCAATCTGACAGCCAGCGAGGAGGAGTTCCTGCGCACCTACGCGGGGGTAGTGAACAG CCAGCTCAGCCAGCTGCCCCAGCACTCCATCGACCAGGGTGCAGAGGATGTGGTGATGGC GTTTTCCAGGTCGGAGACGGAGGACCGGAGGCAGTAGCTGCGAACCCCTTGGAACACCCT GGAAGCTGGCAAGGCCCAGGAGATCTGTGTGGACCTCACCAGCTGAGTGGCGGAGGGTCA CCTTCTCTAGCCCCTGTCCCCCACCCCACCCCTTCCTGTCCTGCCACTCGGGGTCATCGA GGGGGACACCAGTGGTGCAGTTATGATTGGCTTAAAGGGACGGACTCAGATTGGCTGCGG GAAGAAATGTTTTTATTTTTTAAATCTTGACCAACAGAAACCTTTTTATTTTTATTTCTG ACTCTTTATTTTTTAAACAAAAATTGCGCCTCGGTGTATGGCTTCCCAGGAAGCTTGCCG AGCTCTGGTGCTTTATTTAGGTCACTTTTTAGGAATGTGAAGAGGTCCGATTGGCTGCTT AAACTGGAAGAGGATTTTGATTGGCTGGCTAATGGGAAAGGGTTTTGTTTTTTTGTTTTT TTTTTTTCTTTGATTGGCTGCAGGTGTTCTGCGGATCGCACCAGCTTCTCTCTTTTGAAT GCTGAAAACAGGGTTTGGGACGTTGGTTGTTACATTTGACTTGAAAAAAAGAAAGAAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGCTGCTGGTGCTGCTGCTGCTCTGCCG CTGCCGCCGCGGCTGCTCGGGCTGTGAGCGCCCAGGAACAGGCCGCCGCGCGCCGCTCTC GGACCCGCAGCCCCCGCCCGCCCTGCCGGGTCGGGCGGCCCAGGGCTGCACCCTTCTATT CCTCCCTGGCCACAACCCTCCCGTCACAGTTGAGCACCTGTTTGCCTGAAGGTGATTTCC AGAAGCAGGAGTCCCCAGAGCTGGCCAGGGGATGAACCGCGAGGGGGCCCCCGGGAAGAG TCCGGAGGAGATGTACATTCAGCAGAAGGTCCGAGTGCTGCTCATGCTGAGGAAGATGGG CTCCAATCTGACAGCCAGCGAGGAGGAGTTCCTGCGCACCTACGCGGGGGTAGTGAACAG CCAGCTCAGCCAGCTGCCCCAGCACTCCATCGACCAGGGTGCAGAGGATGTGGTGATGGC GTTTTCCAGGTCGGAGACGGAGGACCGGAGGCAGTAGCTGCGAACCCCTTGGAACACCCT GGAAGCTGGCAAGGCCCAGGAGATCTGTGTGGACCTCACCAGCTGAGTGGCGGAGGGTCA CCTTCTCTAGCCCCTGTCCCCCACCCCACCCCTTCCTGTCCTGCCACTCGGGGTCATCGA GGGGGACACCAGTGGTGCAGTTATGATTGGCTTAAAGGGACGGACTCAGATTGGCTGCGG GAAGAAATGTTTTTATTTTTTAAATCTTGACCAACAGAAACCTTTTTATTTTTATTTCTG ACTCTTTATTTTTTAAACAAAAATTGCGCCTCGGTGTATGGCTTCCCAGGAAGCTTGCCG AGCTCTGGTGCTTTATTTAGGTCACTTTTTAGGAATGTGAAGAGGTCCGATTGGCTGCTT AAACTGGAAGAGGATTTTGATTGGCTGGCTAATGGGAAAGGGTTTTGTTTTTTTGTTTTT TTTTTTTCTTTGATTGGCTGCAGGTGTTCTGCGGATCGCACCAGCTTCTCTCTTTTGAAT GCTGAAAACAGGGTTTGGGACGTTGGTTGTTACATTTGACTTGAAAAAAAGAAAGAAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 751-862, + strand, RNAz p=0.741214 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 751-862, + strand, RNAz p=0.741214 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_020248, + |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 245-384, gnl|bosTau2|chr16 (31014118-31013980) | |
| 245-384, gnl|canFam2|chr5 (66062542-66062686) | |
| 245-384, gnl|danRer3|chrUn (108589048-108588939) | |
| 245-384, gnl|dasNov1|scaffold_34594 (6387-6519) | |
| 245-384, gnl|fr1|chrUn (45007298-45007426) | |
| 245-384, gnl|hg17|chr1 (9866275-9866420) | |
| 245-384, gnl|Hg17|chr1 (9866416-9866277) | |
| 245-384, gnl|mm7|chr4 (148535392-148535247) | |
| 245-384, gnl|Mm7|chr4 (148535249-148535384) | |
| 245-384, gnl|monDom2|scaffold_177 (868629-868488) | |
| 245-384, gnl|panTro1|chr1 (9890329-9890474) | |
| 245-384, gnl|rheMac2|chr1 (12944950-12945095) | |
| 245-384, gnl|rn3|chr5 (166638855-166638709) | |
| 245-384, gnl|tetNig1|chr9 (2546676-2546803) | |
| 245-384, gnl|xenTro1|scaffold_745 (126771-126628) | |
| 458-958, gnl|bosTau2|chr16 (30996731-30996218) | |
| 458-958, gnl|Hg17|chr1 (9845101-9844583) | |
| 458-958, gnl|Mm7|chr4 (148553746-148554245) | |
| 959-1080, gnl|bosTau2|chr16 (30996234-30996115) | |
| 959-1080, gnl|canFam2|chr5 (66040926-66041373) | |
| 959-1080, gnl|dasNov1|scaffold_5684 (38063-38488) | |
| 959-1080, gnl|echTel1|scaffold_309843 (101232-100762) | |
| 959-1080, gnl|galGal2|chr21 (3397735-3398146) | |
| 959-1080, gnl|hg17|chr1 (9844432-9844842) | |
| 959-1080, gnl|Hg17|chr1 (9844596-9844486) | |
| 959-1080, gnl|loxAfr1|scaffold_22642 (59157-59584) | |
| 959-1080, gnl|mm7|chr4 (148554406-148553988) | |
| 959-1080, gnl|Mm7|chr4 (148554229-148554350) | |
| 959-1080, gnl|monDom2|scaffold_177 (888408-887974) | |
| 959-1080, gnl|oryCun1|scaffold_133498 (7246-6829) | |
| 959-1080, gnl|panTro1|chr1 (10041693-10042106) | |
| 959-1080, gnl|rheMac2|chr1 (12920634-12921042) | |
| 959-1080, gnl|rn3|chr5 (166658882-166658455) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 245-384, gnl|bosTau2|chr16 (31014118-31013980) | |
| 245-384, gnl|canFam2|chr5 (66062542-66062686) | |
| 245-384, gnl|danRer3|chrUn (108589048-108588939) | |
| 245-384, gnl|dasNov1|scaffold_34594 (6387-6519) | |
| 245-384, gnl|fr1|chrUn (45007298-45007426) | |
| 245-384, gnl|hg17|chr1 (9866275-9866420) | |
| 245-384, gnl|Hg17|chr1 (9866416-9866277) | |
| 245-384, gnl|mm7|chr4 (148535392-148535247) | |
| 245-384, gnl|Mm7|chr4 (148535249-148535384) | |
| 245-384, gnl|monDom2|scaffold_177 (868629-868488) | |
| 245-384, gnl|panTro1|chr1 (9890329-9890474) | |
| 245-384, gnl|rheMac2|chr1 (12944950-12945095) | |
| 245-384, gnl|rn3|chr5 (166638855-166638709) | |
| 245-384, gnl|tetNig1|chr9 (2546676-2546803) | |
| 245-384, gnl|xenTro1|scaffold_745 (126771-126628) | |
| 458-958, gnl|bosTau2|chr16 (30996731-30996218) | |
| 458-958, gnl|Hg17|chr1 (9845101-9844583) | |
| 458-958, gnl|Mm7|chr4 (148553746-148554245) | |
| 959-1080, gnl|bosTau2|chr16 (30996234-30996115) | |
| 959-1080, gnl|canFam2|chr5 (66040926-66041373) | |
| 959-1080, gnl|dasNov1|scaffold_5684 (38063-38488) | |
| 959-1080, gnl|echTel1|scaffold_309843 (101232-100762) | |
| 959-1080, gnl|galGal2|chr21 (3397735-3398146) | |
| 959-1080, gnl|hg17|chr1 (9844432-9844842) | |
| 959-1080, gnl|Hg17|chr1 (9844596-9844486) | |
| 959-1080, gnl|loxAfr1|scaffold_22642 (59157-59584) | |
| 959-1080, gnl|mm7|chr4 (148554406-148553988) | |
| 959-1080, gnl|Mm7|chr4 (148554229-148554350) | |
| 959-1080, gnl|monDom2|scaffold_177 (888408-887974) | |
| 959-1080, gnl|oryCun1|scaffold_133498 (7246-6829) | |
| 959-1080, gnl|panTro1|chr1 (10041693-10042106) | |
| 959-1080, gnl|rheMac2|chr1 (12920634-12921042) | |
| 959-1080, gnl|rn3|chr5 (166658882-166658455) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| csk (1.12597) | |
| sto (0.359648) | |
| cte (0.29274) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| col (0.195008) | |
| cmu (0.186393) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| ova (0.129132) | |
| spc (0.113366) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csk (1.12597) | |
| sto (0.359648) | |
| cte (0.29274) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| col (0.195008) | |
| cmu (0.186393) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| ova (0.129132) | |
| spc (0.113366) |