Non-Coding RNA Search

Ss1.1-Pig4-TMW8043O15.3

Sequence:


               
               GGCCCTTGGGCCAGTTGCTTCCCTTCTCTTGCCTCAACCCCAAGGAGGACGAGGGCCGGG
CTCCGGGCTCCGGCGAAAAAGCATCCCAGTGCAACGTCAGCCTGAAGAAGCAGAGGAGCC
GAAGCATCCTCAGTTCTTTCTTCTGCTGCTTCCGGGATTATAATGTGGAGGCCCCACCAG
GTAGCAGCCCCAGTGTGCTTCCGCCACTGGTGGAGGAGAATGGTGGGCTTCAGAAGGGTG
ACCAGAGGCAGGTCATTCCCATACCAAGTCCACCAGCTAAATACCTCCTTCCAGAGGTGA
CGGTGCTTGACTATGGGAAGAAGTGTGTGGTCATTGATTTAGATGAAACATTGGTGCACA
GCAGGTTCACAGGGCTGGCTCCCCGGAAGAGATCCTTGCCATGACCGTGTCTCAAAGCCT
TACATCAGGTGTACGTGCTGAAGCGGCCACACGTGGACGAGTTCCTCCAGAGGATGGGGC
AGCTCTTCGAGTGTGTGCTTTTTACTGCCAGCTTGGCCAAGTACGCAGACCCCGTGGCTG
ACCTGCTGGACCGCTGGGGTGTGTTCCGGGCCCGGCTCTTCCGAGAATCCTGTGTTTTCC
ATCGTGGGAACTATGTGAAAGACCTGAGTCGCCTGGGACGGGAGCTGAGCAAAGTGATCA
TCGTGGACAATTCTCCTGCCTCGTACATCTTCCATCCTGAGAATGCAGTGCCTGTGCAGT
CCTGGTTCGATGACATGACGGACACAGAGCTGCTGGACCTCATCCCCTTCTTTGAGGGCC
TGAGCCAGGAGGACGATGTGTACAGCATGCTTCACAGACTCTGCAGTAGGTAGCCCGGGC
CTCCAGCCGCCGCCCGCCTATGCCCTCCAGGACCTCAGCCTTGGGACCCGCCCGGCCTCC
GCTCCCCGGGAGCTGAGAATGAGGACACCCTGTGCTCCAGGCCACAGGGTGAATGTGGCC
ATACCTACCTGGTTTCTTTTTTAAGAACAGAAGCAACTATTTTAAAAACAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCTTGGGCCAGTTGCTTCCCTTCTCTTGCCTCAACCCCAAGGAGGACGAGGGCCGGG
CTCCGGGCTCCGGCGAAAAAGCATCCCAGTGCAACGTCAGCCTGAAGAAGCAGAGGAGCC
GAAGCATCCTCAGTTCTTTCTTCTGCTGCTTCCGGGATTATAATGTGGAGGCCCCACCAG
GTAGCAGCCCCAGTGTGCTTCCGCCACTGGTGGAGGAGAATGGTGGGCTTCAGAAGGGTG
ACCAGAGGCAGGTCATTCCCATACCAAGTCCACCAGCTAAATACCTCCTTCCAGAGGTGA
CGGTGCTTGACTATGGGAAGAAGTGTGTGGTCATTGATTTAGATGAAACATTGGTGCACA
GCAGGTTCACAGGGCTGGCTCCCCGGAAGAGATCCTTGCCATGACCGTGTCTCAAAGCCT
TACATCAGGTGTACGTGCTGAAGCGGCCACACGTGGACGAGTTCCTCCAGAGGATGGGGC
AGCTCTTCGAGTGTGTGCTTTTTACTGCCAGCTTGGCCAAGTACGCAGACCCCGTGGCTG
ACCTGCTGGACCGCTGGGGTGTGTTCCGGGCCCGGCTCTTCCGAGAATCCTGTGTTTTCC
ATCGTGGGAACTATGTGAAAGACCTGAGTCGCCTGGGACGGGAGCTGAGCAAAGTGATCA
TCGTGGACAATTCTCCTGCCTCGTACATCTTCCATCCTGAGAATGCAGTGCCTGTGCAGT
CCTGGTTCGATGACATGACGGACACAGAGCTGCTGGACCTCATCCCCTTCTTTGAGGGCC
TGAGCCAGGAGGACGATGTGTACAGCATGCTTCACAGACTCTGCAGTAGGTAGCCCGGGC
CTCCAGCCGCCGCCCGCCTATGCCCTCCAGGACCTCAGCCTTGGGACCCGCCCGGCCTCC
GCTCCCCGGGAGCTGAGAATGAGGACACCCTGTGCTCCAGGCCACAGGGTGAATGTGGCC
ATACCTACCTGGTTTCTTTTTTAAGAACAGAAGCAACTATTTTAAAAACAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34392247|emb|CAE11805.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34392247|emb|CAE11805.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-1007, - strand, RNAz p=0.958065

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-1007, - strand, RNAz p=0.958065

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               80-237, gnl|bosTau2|chr22 (9031491-9031334)
               

               
               80-237, gnl|canFam2|chr23 (10735944-10736130)
               

               
               80-237, gnl|danRer3|chr24 (9466609-9466415)
               

               
               80-237, gnl|fr1|chrUn (122626587-122626410)
               

               
               80-237, gnl|galGal2|chr2 (4011816-4011998)
               

               
               80-237, gnl|hg17|chr3 (37963526-37963716)
               

               
               80-237, gnl|Hg17|chr3 (37963550-37963707)
               

               
               80-237, gnl|loxAfr1|scaffold_53643 (12408-12241)
               

               
               80-237, gnl|mm7|chr9 (118691416-118691603)
               

               
               80-237, gnl|Mm7|chr9 (118691437-118691594)
               

               
               80-237, gnl|oryCun1|scaffold_152641 (4169-3981)
               

               
               80-237, gnl|panTro1|chr2 (39069266-39069456)
               

               
               80-237, gnl|rheMac2|chr2 (98596308-98596118)
               

               
               80-237, gnl|rn3|chr8 (123980296-123980484)
               

               
               80-237, gnl|tetNig1|chr6 (3125514-3125699)
               

               
               80-237, gnl|xenTro1|scaffold_318 (334995-334807)
               


               
               708-1007, gnl|bosTau2|chr22 (9004371-9004071)
               

               
               708-1007, gnl|Hg17|chr3 (37997237-37997540)
               

               
               708-1007, gnl|Mm7|chr9 (118720728-118721045)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-237, gnl|bosTau2|chr22 (9031491-9031334)
               

               
               80-237, gnl|canFam2|chr23 (10735944-10736130)
               

               
               80-237, gnl|danRer3|chr24 (9466609-9466415)
               

               
               80-237, gnl|fr1|chrUn (122626587-122626410)
               

               
               80-237, gnl|galGal2|chr2 (4011816-4011998)
               

               
               80-237, gnl|hg17|chr3 (37963526-37963716)
               

               
               80-237, gnl|Hg17|chr3 (37963550-37963707)
               

               
               80-237, gnl|loxAfr1|scaffold_53643 (12408-12241)
               

               
               80-237, gnl|mm7|chr9 (118691416-118691603)
               

               
               80-237, gnl|Mm7|chr9 (118691437-118691594)
               

               
               80-237, gnl|oryCun1|scaffold_152641 (4169-3981)
               

               
               80-237, gnl|panTro1|chr2 (39069266-39069456)
               

               
               80-237, gnl|rheMac2|chr2 (98596308-98596118)
               

               
               80-237, gnl|rn3|chr8 (123980296-123980484)
               

               
               80-237, gnl|tetNig1|chr6 (3125514-3125699)
               

               
               80-237, gnl|xenTro1|scaffold_318 (334995-334807)
               


               
               708-1007, gnl|bosTau2|chr22 (9004371-9004071)
               

               
               708-1007, gnl|Hg17|chr3 (37997237-37997540)
               

               
               708-1007, gnl|Mm7|chr9 (118720728-118721045)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eye (0.170503)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	80-237, gnl\|bosTau2\|chr22 (9031491-9031334)
	80-237, gnl\|canFam2\|chr23 (10735944-10736130)
	80-237, gnl\|danRer3\|chr24 (9466609-9466415)
	80-237, gnl\|fr1\|chrUn (122626587-122626410)
	80-237, gnl\|galGal2\|chr2 (4011816-4011998)
	80-237, gnl\|hg17\|chr3 (37963526-37963716)
	80-237, gnl\|Hg17\|chr3 (37963550-37963707)
	80-237, gnl\|loxAfr1\|scaffold_53643 (12408-12241)
	80-237, gnl\|mm7\|chr9 (118691416-118691603)
	80-237, gnl\|Mm7\|chr9 (118691437-118691594)
	80-237, gnl\|oryCun1\|scaffold_152641 (4169-3981)
	80-237, gnl\|panTro1\|chr2 (39069266-39069456)
	80-237, gnl\|rheMac2\|chr2 (98596308-98596118)
	80-237, gnl\|rn3\|chr8 (123980296-123980484)
	80-237, gnl\|tetNig1\|chr6 (3125514-3125699)
	80-237, gnl\|xenTro1\|scaffold_318 (334995-334807)

	708-1007, gnl\|bosTau2\|chr22 (9004371-9004071)
	708-1007, gnl\|Hg17\|chr3 (37997237-37997540)
	708-1007, gnl\|Mm7\|chr9 (118720728-118721045)