Non-Coding RNA Search

Ss1.1-Pig4-TMW8043O17.3

Sequence:


               
               CGCCCGGCGCGGTTGAGCGCGCTCCGCGGACGGTCCGCCTGCATCGCTGTGCCCCTTGTT
CACGTTGTTCTTCCCGCAGAGAGGAAAGTATGTTTTTGCTGCTTTATATAAACATGATTT
TTTTTAAGTTATTTAAAAAGTCTAGCTGCCCTGTCCGATTAAGATTTGCCATCTTGCTCC
GAGGCCAGACGAGCAGGTTCCCCAGCAGAGCCCGGGGGCCGCGGTGCCCTGGGACCCGGC
GCAGACCCCGCTCAGCTCCTCCGGCGGCAGCGGGGTCCCACCGGCTGTCGTCCTGCCACC
GGAATCAAAGCTGGCCCCGCCTCCTGCCCACTCGGCTCCGGGGTGGCGCCAGCTCCGGGT
TTTCGGCGCCGAGGTGTGGCTGCTGGTTGTGGAGACGGGCTAGTGGTTAGGAAACTTGAG
GGTCTGGGCGGAAAAAAAAAAAATTTTTTTTTTTTTCCTAAAAAAGTAACACCCCAGTAC
CAAGAGGAGAGGTTAGGTGGCAACCTTATTTTTAATAGTTTTCAATGTTGATGATAATTA
CATAAACACACACACACATCTAGTGATTTCTGAAGATTTGTTTACTTCCTGTGTTCTGTT
TGACTGTATGAAGAACTTGTCCTTCCTCCCTGAATCAGAGTAGGACATGCATCCTCCGCC
TAATTTTAAATGTTGGCTCTGACTTTAAAGCGGTGCACCTGCCCCTCCAGCCCCGGCGGC
GGAGAGCTCACCAGCCCGCGAGCGCACCGTGGCCGCGTTCAGGGCCGGGGGGCTCCCAGC
TTCTCTGGTTGTCACAACAAGCTAGAGATTTTCAAAGCTACACTTTTGAGTAAAAAGCCT
TATTAAAAGGAAAACATGGTTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCGGCGCGGTTGAGCGCGCTCCGCGGACGGTCCGCCTGCATCGCTGTGCCCCTTGTT
CACGTTGTTCTTCCCGCAGAGAGGAAAGTATGTTTTTGCTGCTTTATATAAACATGATTT
TTTTTAAGTTATTTAAAAAGTCTAGCTGCCCTGTCCGATTAAGATTTGCCATCTTGCTCC
GAGGCCAGACGAGCAGGTTCCCCAGCAGAGCCCGGGGGCCGCGGTGCCCTGGGACCCGGC
GCAGACCCCGCTCAGCTCCTCCGGCGGCAGCGGGGTCCCACCGGCTGTCGTCCTGCCACC
GGAATCAAAGCTGGCCCCGCCTCCTGCCCACTCGGCTCCGGGGTGGCGCCAGCTCCGGGT
TTTCGGCGCCGAGGTGTGGCTGCTGGTTGTGGAGACGGGCTAGTGGTTAGGAAACTTGAG
GGTCTGGGCGGAAAAAAAAAAAATTTTTTTTTTTTTCCTAAAAAAGTAACACCCCAGTAC
CAAGAGGAGAGGTTAGGTGGCAACCTTATTTTTAATAGTTTTCAATGTTGATGATAATTA
CATAAACACACACACACATCTAGTGATTTCTGAAGATTTGTTTACTTCCTGTGTTCTGTT
TGACTGTATGAAGAACTTGTCCTTCCTCCCTGAATCAGAGTAGGACATGCATCCTCCGCC
TAATTTTAAATGTTGGCTCTGACTTTAAAGCGGTGCACCTGCCCCTCCAGCCCCGGCGGC
GGAGAGCTCACCAGCCCGCGAGCGCACCGTGGCCGCGTTCAGGGCCGGGGGGCTCCCAGC
TTCTCTGGTTGTCACAACAAGCTAGAGATTTTCAAAGCTACACTTTTGAGTAAAAAGCCT
TATTAAAAGGAAAACATGGTTAAT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               32-209, gnl|bosTau2|chr21 (44121283-44121106)
               

               
               32-209, gnl|Hg17|chr14 (98934718-98934539)
               

               
               32-209, gnl|Mm7|chr12 (105628368-105628199)
               


               
               395-864, gnl|bosTau2|chr21 (44120924-44120437)
               

               
               395-864, gnl|Hg17|chr14 (98934321-98933837)
               

               
               395-864, gnl|Mm7|chr12 (105628014-105627606)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-209, gnl|bosTau2|chr21 (44121283-44121106)
               

               
               32-209, gnl|Hg17|chr14 (98934718-98934539)
               

               
               32-209, gnl|Mm7|chr12 (105628368-105628199)
               


               
               395-864, gnl|bosTau2|chr21 (44120924-44120437)
               

               
               395-864, gnl|Hg17|chr14 (98934321-98933837)
               

               
               395-864, gnl|Mm7|chr12 (105628014-105627606)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               hea (0.204499)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               csk (0.140746)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               csk (0.140746)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	32-209, gnl\|bosTau2\|chr21 (44121283-44121106)
	32-209, gnl\|Hg17\|chr14 (98934718-98934539)
	32-209, gnl\|Mm7\|chr12 (105628368-105628199)

	395-864, gnl\|bosTau2\|chr21 (44120924-44120437)
	395-864, gnl\|Hg17\|chr14 (98934321-98933837)
	395-864, gnl\|Mm7\|chr12 (105628014-105627606)

	hea (0.204499)
	col (0.195008)
	gul (0.177588)
	csk (0.140746)
	ebs (0.118301)
	ecc (0.115035)