Non-Coding RNA Search

Ss1.1-Pig4-TMW8043O21.5.5

Sequence:


               
               GTCTGTGACTATGGATGAGGACGCACTGACTTTGGAGGAACTTGAAGAACAGCAGAGGCG
GATATGGGCGGCCCTGGAGCATGCCGAGAGCGTCAACAGTGATTCTGACATTCCCGTTGA
CACACCTCTAACTGGGAATTCGGTTGCCTCTTCACCTTGTCCGAATGAGCTCGAGCTCCC
TGCCCTGGAGGAAAAACCATCTGAGAAGCAGATGCCAGATGAGGATGAGGTACCAGACAC
GTGTACAAAGAAATCAGAGGTTGAACAGTGCTCGAGTCCAGATTCTGAGGCTGCCTTGCT
CGACCAGAAGGAAAAGGAAGCTTCTGCTCAGGTCAGCTGCAAAGATGCTCCCCTTGGTAA
TGGCAGCGTCAAGTCAAACTGTGCCATCAGCAATGGAGGTGGCAGCCAGAAGCTCCTTCA
CGTGGACACCAGTCCTGCCACGGCCCCTAAAATCCACAGTCCCATCCCTGACATGAGCAA
GTTTGCAACCGGAATAACGCCGTTCGAGTTTGAGAACATGGCAGAATCTACTGGAATGTA
CCTCAGGATAAGAAACTTGTTAAAGAACTCACCTCGAAACCAGCAAAAAAACAAAAAAAC
TTCTGAATAACTGACAAAATACCAAGAGCTATTTAATTATCTATAACTGTGCATTCCGGT
GATTAGTTCTAGGTGGACAGGTGGAGTTGTTCTCCTCCTTGTCCCTCTCATGTTGAAAAA
TCTATCCAAGGCTTAATCGTGGTCTAAAGTCAGGCCTCTTTTAAAGAACGGAAAAACTGG
GCTTGCTGGTTTACTATATTTTATTCTCACTGATAAAAACTCAAGAGGGAGATGTAAGTA
TGGTTTAGAGATAGTTAAGGTTTCTACTATTTTTGAATCGTGAGTGTCTGTCAAGAGTGG
TGATTTTTATCTGTCTTTTGTATATTGTTTTCCCTTTCTACATTTTGCTAATTATCCTGT
ATGTAAGTTTAATATATCACTTTTTAAAAGAAAAAAACCCTAACCATTTAAAATTCATAT
TTCAACTCTGACAACCAAATGAGAAAAATCAGGGATGAACAGCTTTATCCCATTTGGGGT
ATTTTTGTAAGTAATTTACATGCATCAATTTTAATAACACTTTTACTTTTTTGTAATTTC
ATTCTTCATATAAGCTTGCTATACAGGTATGTTCATCTTTGTGTACAAAGTTTAATAAAT
TAGTTTTCATATACATAATCTAAGACTTTGAATACAAAAAAAAAAAAGACTCACAATTAA
ATTAGTATATACAACCTTGTAAGTTTAGAAGTAAACTATGTGATTGCAAAAATTAGTGGT
AGCAAGGGAAATATATGAAATTTCAAGTTTGGGTATTTTCAATGAATTTCAGCCTTTAAT
ATAAAAACAGCAGAATCTTTTAAAGTAGTTATTTTGAAAAAAAATAAATGGAGGGCAGCT
AGCCTTTGTGCAAAAATAATTTTCTAGATTTGAATCCTATGATCATTAAAAACAGAAAGA
CATAAATTGTGTTTAATTATCATATACATATATAAGATAGAGCTGAAACTATGTTTTTTG
TCTTTATGTGGAATGCCATTACAACTTTATAGTCAAGTCCATGAAAATAAACATTTAGAA
GATCATGAATTATTAGTTTTAGGTAGTGTTATTCTGCTCTCGGGCCAGCAGAGGGAGCAA
AATATAACCATTCCAGGTTTAGTTTTCATTTGGGGAACTTGAATAACCAAATTTACTGTT
CTATAAACAATAAAGGGAAGGAAAATTATATGAAAAAGGGAGATTTATTTTCAAGGCTCT
CACAGAACATCTTAGAAATGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGTGACTATGGATGAGGACGCACTGACTTTGGAGGAACTTGAAGAACAGCAGAGGCG
GATATGGGCGGCCCTGGAGCATGCCGAGAGCGTCAACAGTGATTCTGACATTCCCGTTGA
CACACCTCTAACTGGGAATTCGGTTGCCTCTTCACCTTGTCCGAATGAGCTCGAGCTCCC
TGCCCTGGAGGAAAAACCATCTGAGAAGCAGATGCCAGATGAGGATGAGGTACCAGACAC
GTGTACAAAGAAATCAGAGGTTGAACAGTGCTCGAGTCCAGATTCTGAGGCTGCCTTGCT
CGACCAGAAGGAAAAGGAAGCTTCTGCTCAGGTCAGCTGCAAAGATGCTCCCCTTGGTAA
TGGCAGCGTCAAGTCAAACTGTGCCATCAGCAATGGAGGTGGCAGCCAGAAGCTCCTTCA
CGTGGACACCAGTCCTGCCACGGCCCCTAAAATCCACAGTCCCATCCCTGACATGAGCAA
GTTTGCAACCGGAATAACGCCGTTCGAGTTTGAGAACATGGCAGAATCTACTGGAATGTA
CCTCAGGATAAGAAACTTGTTAAAGAACTCACCTCGAAACCAGCAAAAAAACAAAAAAAC
TTCTGAATAACTGACAAAATACCAAGAGCTATTTAATTATCTATAACTGTGCATTCCGGT
GATTAGTTCTAGGTGGACAGGTGGAGTTGTTCTCCTCCTTGTCCCTCTCATGTTGAAAAA
TCTATCCAAGGCTTAATCGTGGTCTAAAGTCAGGCCTCTTTTAAAGAACGGAAAAACTGG
GCTTGCTGGTTTACTATATTTTATTCTCACTGATAAAAACTCAAGAGGGAGATGTAAGTA
TGGTTTAGAGATAGTTAAGGTTTCTACTATTTTTGAATCGTGAGTGTCTGTCAAGAGTGG
TGATTTTTATCTGTCTTTTGTATATTGTTTTCCCTTTCTACATTTTGCTAATTATCCTGT
ATGTAAGTTTAATATATCACTTTTTAAAAGAAAAAAACCCTAACCATTTAAAATTCATAT
TTCAACTCTGACAACCAAATGAGAAAAATCAGGGATGAACAGCTTTATCCCATTTGGGGT
ATTTTTGTAAGTAATTTACATGCATCAATTTTAATAACACTTTTACTTTTTTGTAATTTC
ATTCTTCATATAAGCTTGCTATACAGGTATGTTCATCTTTGTGTACAAAGTTTAATAAAT
TAGTTTTCATATACATAATCTAAGACTTTGAATACAAAAAAAAAAAAGACTCACAATTAA
ATTAGTATATACAACCTTGTAAGTTTAGAAGTAAACTATGTGATTGCAAAAATTAGTGGT
AGCAAGGGAAATATATGAAATTTCAAGTTTGGGTATTTTCAATGAATTTCAGCCTTTAAT
ATAAAAACAGCAGAATCTTTTAAAGTAGTTATTTTGAAAAAAAATAAATGGAGGGCAGCT
AGCCTTTGTGCAAAAATAATTTTCTAGATTTGAATCCTATGATCATTAAAAACAGAAAGA
CATAAATTGTGTTTAATTATCATATACATATATAAGATAGAGCTGAAACTATGTTTTTTG
TCTTTATGTGGAATGCCATTACAACTTTATAGTCAAGTCCATGAAAATAAACATTTAGAA
GATCATGAATTATTAGTTTTAGGTAGTGTTATTCTGCTCTCGGGCCAGCAGAGGGAGCAA
AATATAACCATTCCAGGTTTAGTTTTCATTTGGGGAACTTGAATAACCAAATTTACTGTT
CTATAAACAATAAAGGGAAGGAAAATTATATGAAAAAGGGAGATTTATTTTCAAGGCTCT
CACAGAACATCTTAGAAATGGAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55639131|ref|XP_509445.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55639131|ref|XP_509445.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-1824, gnl|bosTau2|chr17 (27914343-27916161)
               

               
               2-1824, gnl|Hg17|chr12 (121483529-121481095)
               

               
               2-1824, gnl|Mm7|chr5 (122946790-122945168)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1824, gnl|bosTau2|chr17 (27914343-27916161)
               

               
               2-1824, gnl|Hg17|chr12 (121483529-121481095)
               

               
               2-1824, gnl|Mm7|chr5 (122946790-122945168)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	2-1824, gnl\|bosTau2\|chr17 (27914343-27916161)
	2-1824, gnl\|Hg17\|chr12 (121483529-121481095)
	2-1824, gnl\|Mm7\|chr5 (122946790-122945168)

	rec (0.346141)
	sme (0.305437)
	mgp (0.230681)
	sag (0.182715)
	mgm (0.180343)
	sin (0.174948)
	cut (0.169924)
	cje (0.165235)
	tbr (0.154178)
	isp (0.150376)
	fat (0.147427)
	lin (0.145603)
	spl (0.143184)
	lyg (0.133103)
	jca (0.11396)
	cty (0.10408)