Ss1.1-Pig4-TMW8043P08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTGATTGGGGAGGGAGCGCTGCCCTCCTATGAACACGCACACAGGCATCTTGTGCAGG AAAATTGCGAGGCGGTGCCTCACAGAGCAACTGTCTATGCTCAGCTGGTGGAGTCCAGGA AGATGTGGTCATGGAACAAGCTGTTTCCCATCCATGTTCAGACTAGCCTTGGAGAGCAGG TCATTGTTCCCCCCTCGGAACTGGAGAGGTGCCCTGGTGCGCCCTCTGTCTACGATATTC AGCTGAACCAGGTCTCGCCTACTGACTTCACTGTCCTCAGTGATGTGCTGCCGATGTTCA GTGTGGACTTCAGCAAGCAAGTCAGTAGTTCAACAGCCTGCCACTGCAGGTACTTTGAAC CTTTGGCATCAGGCCGAGCTCAGGTGGTTCTCTCCTGGTGGGACATTGAAATGGACCCCG AGGGGAAGATCAAGTGCACCATGGCCCCCTTCTGGGCACAGTCGAACCCGGAGGAGCTCC AGTGGCGGGACCACTGGATGCAGTGTGTGTACTTCCTGCCACAAGAGGAGCCTGTTGTCC AGGGCTTAGCCGTCTGGCTGGTGGCTCACCATGACGACTACTGTGTGTGGTACAGCCTCC AGAGGACCAGCCCTGAAGAGAATGAGAGAGTCCACCCACTGCGCCCCGTGTGTGACTGCC AGGCTCACCTGCTCTGGACCCGGCCTCGGTTTGGCGAGATCAATGATCAGGACAGAACTG ATCAATATGTCCAGGCCCTGAGGACAGTGCTGAAACCAGACAGTGTCTGTCTGTGCGTCA GTGATGGCAGTCTGCTTTCCATGCTGGCCTATCACCTTGGAGCAGAGCAGGTATTTACAA TAGAGAATTCAGCAGCTTCTCATAGAGTGATGAAAAAAATCTTCAAGGCTAACCATTTGG AAGATAAAATTAATATCATAGAGAAACGGCCTGAATTATTAGCACCTGCAGACCTGGAGG GTAAAAAGGTCTCTCTCTTCCTGGGTGAACCGTTCTTCACCACCAGCCTGCTGCCGTGGC ACAACCTGTACTTCTGGTATGTGCGGACTGCAGTGGCACAACATCTGGGGCCTGGTGCCG TCGTGATGCCTCAGGCTGCCTCATTGCACATGGTGGTCGTGGAATTCAAGGATCTGTGGA GAATCCGGAGCCCCTGTGGTGACTGTGAAGGCTTTGATGTGCACATCATGGATGATATGA TTAAGCGTGCCCTGGACTTCAGAGAGAGCAAGGAGGCTGAGCCCCATCCGCTGTGGGAGT ACCCGTGCCGCAGCCTCTCCGAGCCCCAGAAGGTTCTGACCTTTGATTTTCGGCAGCCAG TCCCCTCACAGCCTGTCCGTGCTGAGGGCACCATTAAGCTCAGGCGGCCTGGGAGGAGCC ACGGGGCTGTCTTATGGATGGAATACCACCTGACCCCGGACAGCACGGTCAGCACCGGCC TCCTGAAGCCCACAGAGGACAAGGGGGACTGTTGCTGGAACCCCCACTGCAAGCAGGCTG TGTACTTCTTCAACACCACACTAGACCCCAGCGTGGCATCAGGCAGCCCCCGGACCGTCG GCTACACTGTGGAGTTCCACTCTCACACTGGAGACATCACCATGGATTTCATACTCCCTG ATGTCCTCTCTTGTTGAGAAATAAAGTGGCCAAGGGCTCCAGGCTCTGCATGGTATGGCT TTCTCGGAAGGAAGGTGAAGGCGCCTCTCCTTTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTGATTGGGGAGGGAGCGCTGCCCTCCTATGAACACGCACACAGGCATCTTGTGCAGG AAAATTGCGAGGCGGTGCCTCACAGAGCAACTGTCTATGCTCAGCTGGTGGAGTCCAGGA AGATGTGGTCATGGAACAAGCTGTTTCCCATCCATGTTCAGACTAGCCTTGGAGAGCAGG TCATTGTTCCCCCCTCGGAACTGGAGAGGTGCCCTGGTGCGCCCTCTGTCTACGATATTC AGCTGAACCAGGTCTCGCCTACTGACTTCACTGTCCTCAGTGATGTGCTGCCGATGTTCA GTGTGGACTTCAGCAAGCAAGTCAGTAGTTCAACAGCCTGCCACTGCAGGTACTTTGAAC CTTTGGCATCAGGCCGAGCTCAGGTGGTTCTCTCCTGGTGGGACATTGAAATGGACCCCG AGGGGAAGATCAAGTGCACCATGGCCCCCTTCTGGGCACAGTCGAACCCGGAGGAGCTCC AGTGGCGGGACCACTGGATGCAGTGTGTGTACTTCCTGCCACAAGAGGAGCCTGTTGTCC AGGGCTTAGCCGTCTGGCTGGTGGCTCACCATGACGACTACTGTGTGTGGTACAGCCTCC AGAGGACCAGCCCTGAAGAGAATGAGAGAGTCCACCCACTGCGCCCCGTGTGTGACTGCC AGGCTCACCTGCTCTGGACCCGGCCTCGGTTTGGCGAGATCAATGATCAGGACAGAACTG ATCAATATGTCCAGGCCCTGAGGACAGTGCTGAAACCAGACAGTGTCTGTCTGTGCGTCA GTGATGGCAGTCTGCTTTCCATGCTGGCCTATCACCTTGGAGCAGAGCAGGTATTTACAA TAGAGAATTCAGCAGCTTCTCATAGAGTGATGAAAAAAATCTTCAAGGCTAACCATTTGG AAGATAAAATTAATATCATAGAGAAACGGCCTGAATTATTAGCACCTGCAGACCTGGAGG GTAAAAAGGTCTCTCTCTTCCTGGGTGAACCGTTCTTCACCACCAGCCTGCTGCCGTGGC ACAACCTGTACTTCTGGTATGTGCGGACTGCAGTGGCACAACATCTGGGGCCTGGTGCCG TCGTGATGCCTCAGGCTGCCTCATTGCACATGGTGGTCGTGGAATTCAAGGATCTGTGGA GAATCCGGAGCCCCTGTGGTGACTGTGAAGGCTTTGATGTGCACATCATGGATGATATGA TTAAGCGTGCCCTGGACTTCAGAGAGAGCAAGGAGGCTGAGCCCCATCCGCTGTGGGAGT ACCCGTGCCGCAGCCTCTCCGAGCCCCAGAAGGTTCTGACCTTTGATTTTCGGCAGCCAG TCCCCTCACAGCCTGTCCGTGCTGAGGGCACCATTAAGCTCAGGCGGCCTGGGAGGAGCC ACGGGGCTGTCTTATGGATGGAATACCACCTGACCCCGGACAGCACGGTCAGCACCGGCC TCCTGAAGCCCACAGAGGACAAGGGGGACTGTTGCTGGAACCCCCACTGCAAGCAGGCTG TGTACTTCTTCAACACCACACTAGACCCCAGCGTGGCATCAGGCAGCCCCCGGACCGTCG GCTACACTGTGGAGTTCCACTCTCACACTGGAGACATCACCATGGATTTCATACTCCCTG ATGTCCTCTCTTGTTGAGAAATAAAGTGGCCAAGGGCTCCAGGCTCTGCATGGTATGGCT TTCTCGGAAGGAAGGTGAAGGCGCCTCTCCTTTCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 58-176, - strand, RNAz p=0.747758 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 58-176, - strand, RNAz p=0.747758 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 58-301, gnl|bosTau2|chr18 (14648579-14648336) | |
| 58-301, gnl|canFam2|chr5 (84197909-84197650) | |
| 58-301, gnl|danRer3|chr25 (16908356-16908121) | |
| 58-301, gnl|dasNov1|scaffold_38301 (4691-4949) | |
| 58-301, gnl|echTel1|scaffold_317765 (43413-43154) | |
| 58-301, gnl|fr1|chrUn (201367506-201367259) | |
| 58-301, gnl|galGal2|chr11 (262329-262081) | |
| 58-301, gnl|hg17|chr16 (66930723-66930982) | |
| 58-301, gnl|Hg17|chr16 (66930724-66930967) | |
| 58-301, gnl|loxAfr1|scaffold_6875 (19474-19215) | |
| 58-301, gnl|mm7|chr8 (104835646-104835905) | |
| 58-301, gnl|Mm7|chr8 (104835647-104835890) | |
| 58-301, gnl|monDom2|scaffold_23 (17435057-17434809) | |
| 58-301, gnl|oryCun1|scaffold_215247 (205865-205606) | |
| 58-301, gnl|panTro1|chr18 (61244842-61245101) | |
| 58-301, gnl|rheMac2|chr20 (66690124-66690383) | |
| 58-301, gnl|rn3|chr19 (36099622-36099881) | |
| 58-301, gnl|tetNig1|chr13 (673489-673724) | |
| 58-301, gnl|xenTro1|scaffold_631 (432368-432132) | |
| 607-749, gnl|bosTau2|chr18 (14643979-14643837) | |
| 607-749, gnl|Hg17|chr16 (66937545-66937687) | |
| 607-749, gnl|Mm7|chr8 (104840962-104841104) | |
| 967-1131, gnl|bosTau2|chr18 (14640397-14640233) | |
| 967-1131, gnl|canFam2|chr5 (84184641-84184441) | |
| 967-1131, gnl|danRer3|chr25 (16901969-16901798) | |
| 967-1131, gnl|dasNov1|scaffold_38301 (18241-18436) | |
| 967-1131, gnl|echTel1|scaffold_311697 (76249-76086) | |
| 967-1131, gnl|fr1|chrUn (201366049-201365873) | |
| 967-1131, gnl|galGal2|chr11 (257097-256910) | |
| 967-1131, gnl|hg17|chr16 (66943631-66943830) | |
| 967-1131, gnl|Hg17|chr16 (66943650-66943814) | |
| 967-1131, gnl|loxAfr1|scaffold_6875 (7124-6925) | |
| 967-1131, gnl|mm7|chr8 (104845898-104846096) | |
| 967-1131, gnl|Mm7|chr8 (104845916-104846080) | |
| 967-1131, gnl|monDom2|scaffold_23 (17398016-17397825) | |
| 967-1131, gnl|panTro1|chr18 (61257759-61257958) | |
| 967-1131, gnl|rheMac2|chr20 (66703293-66703493) | |
| 967-1131, gnl|rn3|chr19 (36110946-36111144) | |
| 967-1131, gnl|tetNig1|chr13 (675253-675423) | |
| 1204-1384, gnl|bosTau2|chr18 (14636805-14636624) | |
| 1204-1384, gnl|canFam2|chr5 (84182375-84182230) | |
| 1204-1384, gnl|danRer3|chr25 (16899014-16898884) | |
| 1204-1384, gnl|echTel1|scaffold_311697 (76011-75883) | |
| 1204-1384, gnl|fr1|chrUn (201365532-201365388) | |
| 1204-1384, gnl|galGal2|chr11 (253000-252857) | |
| 1204-1384, gnl|hg17|chr16 (66947112-66947255) | |
| 1204-1384, gnl|Hg17|chr16 (66947125-66947303) | |
| 1204-1384, gnl|loxAfr1|scaffold_6875 (4007-3864) | |
| 1204-1384, gnl|mm7|chr8 (104849149-104849291) | |
| 1204-1384, gnl|Mm7|chr8 (104849161-104849342) | |
| 1204-1384, gnl|monDom2|scaffold_23 (17395246-17395103) | |
| 1204-1384, gnl|rheMac2|chr20 (66706707-66706850) | |
| 1204-1384, gnl|rn3|chr19 (36114790-36114932) | |
| 1204-1384, gnl|tetNig1|chr13 (675786-675922) | |
| 1462-1623, gnl|bosTau2|chr18 (14635418-14635257) | |
| 1462-1623, gnl|Hg17|chr16 (66948456-66948617) | |
| 1462-1623, gnl|Mm7|chr8 (104850332-104850493) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 58-301, gnl|bosTau2|chr18 (14648579-14648336) | |
| 58-301, gnl|canFam2|chr5 (84197909-84197650) | |
| 58-301, gnl|danRer3|chr25 (16908356-16908121) | |
| 58-301, gnl|dasNov1|scaffold_38301 (4691-4949) | |
| 58-301, gnl|echTel1|scaffold_317765 (43413-43154) | |
| 58-301, gnl|fr1|chrUn (201367506-201367259) | |
| 58-301, gnl|galGal2|chr11 (262329-262081) | |
| 58-301, gnl|hg17|chr16 (66930723-66930982) | |
| 58-301, gnl|Hg17|chr16 (66930724-66930967) | |
| 58-301, gnl|loxAfr1|scaffold_6875 (19474-19215) | |
| 58-301, gnl|mm7|chr8 (104835646-104835905) | |
| 58-301, gnl|Mm7|chr8 (104835647-104835890) | |
| 58-301, gnl|monDom2|scaffold_23 (17435057-17434809) | |
| 58-301, gnl|oryCun1|scaffold_215247 (205865-205606) | |
| 58-301, gnl|panTro1|chr18 (61244842-61245101) | |
| 58-301, gnl|rheMac2|chr20 (66690124-66690383) | |
| 58-301, gnl|rn3|chr19 (36099622-36099881) | |
| 58-301, gnl|tetNig1|chr13 (673489-673724) | |
| 58-301, gnl|xenTro1|scaffold_631 (432368-432132) | |
| 607-749, gnl|bosTau2|chr18 (14643979-14643837) | |
| 607-749, gnl|Hg17|chr16 (66937545-66937687) | |
| 607-749, gnl|Mm7|chr8 (104840962-104841104) | |
| 967-1131, gnl|bosTau2|chr18 (14640397-14640233) | |
| 967-1131, gnl|canFam2|chr5 (84184641-84184441) | |
| 967-1131, gnl|danRer3|chr25 (16901969-16901798) | |
| 967-1131, gnl|dasNov1|scaffold_38301 (18241-18436) | |
| 967-1131, gnl|echTel1|scaffold_311697 (76249-76086) | |
| 967-1131, gnl|fr1|chrUn (201366049-201365873) | |
| 967-1131, gnl|galGal2|chr11 (257097-256910) | |
| 967-1131, gnl|hg17|chr16 (66943631-66943830) | |
| 967-1131, gnl|Hg17|chr16 (66943650-66943814) | |
| 967-1131, gnl|loxAfr1|scaffold_6875 (7124-6925) | |
| 967-1131, gnl|mm7|chr8 (104845898-104846096) | |
| 967-1131, gnl|Mm7|chr8 (104845916-104846080) | |
| 967-1131, gnl|monDom2|scaffold_23 (17398016-17397825) | |
| 967-1131, gnl|panTro1|chr18 (61257759-61257958) | |
| 967-1131, gnl|rheMac2|chr20 (66703293-66703493) | |
| 967-1131, gnl|rn3|chr19 (36110946-36111144) | |
| 967-1131, gnl|tetNig1|chr13 (675253-675423) | |
| 1204-1384, gnl|bosTau2|chr18 (14636805-14636624) | |
| 1204-1384, gnl|canFam2|chr5 (84182375-84182230) | |
| 1204-1384, gnl|danRer3|chr25 (16899014-16898884) | |
| 1204-1384, gnl|echTel1|scaffold_311697 (76011-75883) | |
| 1204-1384, gnl|fr1|chrUn (201365532-201365388) | |
| 1204-1384, gnl|galGal2|chr11 (253000-252857) | |
| 1204-1384, gnl|hg17|chr16 (66947112-66947255) | |
| 1204-1384, gnl|Hg17|chr16 (66947125-66947303) | |
| 1204-1384, gnl|loxAfr1|scaffold_6875 (4007-3864) | |
| 1204-1384, gnl|mm7|chr8 (104849149-104849291) | |
| 1204-1384, gnl|Mm7|chr8 (104849161-104849342) | |
| 1204-1384, gnl|monDom2|scaffold_23 (17395246-17395103) | |
| 1204-1384, gnl|rheMac2|chr20 (66706707-66706850) | |
| 1204-1384, gnl|rn3|chr19 (36114790-36114932) | |
| 1204-1384, gnl|tetNig1|chr13 (675786-675922) | |
| 1462-1623, gnl|bosTau2|chr18 (14635418-14635257) | |
| 1462-1623, gnl|Hg17|chr16 (66948456-66948617) | |
| 1462-1623, gnl|Mm7|chr8 (104850332-104850493) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cag (0.302389) | |
| hyp (0.285673) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| nca (0.136874) | |
| pla (0.133672) | |
| eru (0.120048) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.302389) | |
| hyp (0.285673) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| nca (0.136874) | |
| pla (0.133672) | |
| eru (0.120048) |