Non-Coding RNA Search

Ss1.1-Pig4-TMW8043P09.3

Sequence:


               
               GTGGACAAAATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAA
ATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCTCAAGGAGTGGGCCTTGATTCTACAGGT
TATTATGACCAGGAAATTTATGGTGGAAGTGACAGCAGATTTGCTGGATACGTGACATCA
ATTGCTGCAACTGAACTTGAAGATGATGACGATGACTACTCATCATCTACAAGTTTGCTC
GGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCGCTGCTTAATGATATACCACAGTCA
ACAGAACAGTATGATCCATTTGCTGAGCACCGACCTCCGAAGATTGCAGACCGGGAAGAT
GAATACAAAAAGCACAGGCGGACCATGATAATTTCTCCAGAGCGTCTTGATCCTTTTGCA
GATGGTAATTCTTTCCCACTTTTCTATAAGTATTCAGAAATTTATTTATGTTAAGTTGTC
TTTAGCCCTTTGATTTTTTTTGGCATGCTTATGAATTTGCTTTTCTTTTTTAAAATCCCC
CTTATTATAGATTTGTATAGATTTGGTTGAAGTCACAGATGCCATATTCTTCATCTTTAT
AATGCCAGTTTTCTTTCCAGGTAGAAGGACAAGAAAATAATGAGCCAATGCCATAGAAAC
GCAAAGGGTTAAAGGTTTTTCTTTTACTTTTGTTTTGGGTACGCTTTCTTTACTTTGAAC
AAATATGTTTTTCTGCTCAAAATACTTTCAAATTATTGAAAGTCTTCATTCCAAATCTTA
GATTTTTAGGATTGTTACTTTTGAGAAACTGTTTCCACATTAGCACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGACAAAATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAA
ATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCTCAAGGAGTGGGCCTTGATTCTACAGGT
TATTATGACCAGGAAATTTATGGTGGAAGTGACAGCAGATTTGCTGGATACGTGACATCA
ATTGCTGCAACTGAACTTGAAGATGATGACGATGACTACTCATCATCTACAAGTTTGCTC
GGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCGCTGCTTAATGATATACCACAGTCA
ACAGAACAGTATGATCCATTTGCTGAGCACCGACCTCCGAAGATTGCAGACCGGGAAGAT
GAATACAAAAAGCACAGGCGGACCATGATAATTTCTCCAGAGCGTCTTGATCCTTTTGCA
GATGGTAATTCTTTCCCACTTTTCTATAAGTATTCAGAAATTTATTTATGTTAAGTTGTC
TTTAGCCCTTTGATTTTTTTTGGCATGCTTATGAATTTGCTTTTCTTTTTTAAAATCCCC
CTTATTATAGATTTGTATAGATTTGGTTGAAGTCACAGATGCCATATTCTTCATCTTTAT
AATGCCAGTTTTCTTTCCAGGTAGAAGGACAAGAAAATAATGAGCCAATGCCATAGAAAC
GCAAAGGGTTAAAGGTTTTTCTTTTACTTTTGTTTTGGGTACGCTTTCTTTACTTTGAAC
AAATATGTTTTTCTGCTCAAAATACTTTCAAATTATTGAAAGTCTTCATTCCAAATCTTA
GATTTTTAGGATTGTTACTTTTGAGAAACTGTTTCCACATTAGCACTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|54112119|ref|NP_001005526.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|54112119|ref|NP_001005526.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               76-828, + strand, RNAz p=0.974731

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-828, + strand, RNAz p=0.974731

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               36-205, gnl|bosTau2|chr2 (50645381-50645212)
               

               
               36-205, gnl|canFam2|chr37 (9949154-9949356)
               

               
               36-205, gnl|dasNov1|scaffold_41642 (9546-9749)
               

               
               36-205, gnl|echTel1|scaffold_293573 (62997-62793)
               

               
               36-205, gnl|fr1|chrUn (268464008-268463823)
               

               
               36-205, gnl|galGal2|chr7 (11042317-11042522)
               

               
               36-205, gnl|hg17|chr2 (198114013-198114218)
               

               
               36-205, gnl|Hg17|chr2 (198114206-198114037)
               

               
               36-205, gnl|loxAfr1|scaffold_33792 (11396-11192)
               

               
               36-205, gnl|mm7|chr1 (55266521-55266726)
               

               
               36-205, gnl|Mm7|chr1 (55266712-55266543)
               

               
               36-205, gnl|monDom2|scaffold_2 (107085531-107085728)
               

               
               36-205, gnl|oryCun1|scaffold_207751 (50006-49806)
               

               
               36-205, gnl|panTro1|chr13 (88066671-88066876)
               

               
               36-205, gnl|rheMac2|chr12 (61038843-61039048)
               

               
               36-205, gnl|rn3|chr9 (53829995-53830199)
               

               
               36-205, gnl|tetNig1|chr2 (6916449-6916258)
               

               
               36-205, gnl|xenTro1|scaffold_48 (2806384-2806188)
               


               
               307-828, gnl|bosTau2|chr2 (50643111-50642589)
               

               
               307-828, gnl|Hg17|chr2 (198110775-198110253)
               

               
               307-828, gnl|Mm7|chr1 (55263805-55263288)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-205, gnl|bosTau2|chr2 (50645381-50645212)
               

               
               36-205, gnl|canFam2|chr37 (9949154-9949356)
               

               
               36-205, gnl|dasNov1|scaffold_41642 (9546-9749)
               

               
               36-205, gnl|echTel1|scaffold_293573 (62997-62793)
               

               
               36-205, gnl|fr1|chrUn (268464008-268463823)
               

               
               36-205, gnl|galGal2|chr7 (11042317-11042522)
               

               
               36-205, gnl|hg17|chr2 (198114013-198114218)
               

               
               36-205, gnl|Hg17|chr2 (198114206-198114037)
               

               
               36-205, gnl|loxAfr1|scaffold_33792 (11396-11192)
               

               
               36-205, gnl|mm7|chr1 (55266521-55266726)
               

               
               36-205, gnl|Mm7|chr1 (55266712-55266543)
               

               
               36-205, gnl|monDom2|scaffold_2 (107085531-107085728)
               

               
               36-205, gnl|oryCun1|scaffold_207751 (50006-49806)
               

               
               36-205, gnl|panTro1|chr13 (88066671-88066876)
               

               
               36-205, gnl|rheMac2|chr12 (61038843-61039048)
               

               
               36-205, gnl|rn3|chr9 (53829995-53830199)
               

               
               36-205, gnl|tetNig1|chr2 (6916449-6916258)
               

               
               36-205, gnl|xenTro1|scaffold_48 (2806384-2806188)
               


               
               307-828, gnl|bosTau2|chr2 (50643111-50642589)
               

               
               307-828, gnl|Hg17|chr2 (198110775-198110253)
               

               
               307-828, gnl|Mm7|chr1 (55263805-55263288)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mga (0.160205)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)

	36-205, gnl\|bosTau2\|chr2 (50645381-50645212)
	36-205, gnl\|canFam2\|chr37 (9949154-9949356)
	36-205, gnl\|dasNov1\|scaffold_41642 (9546-9749)
	36-205, gnl\|echTel1\|scaffold_293573 (62997-62793)
	36-205, gnl\|fr1\|chrUn (268464008-268463823)
	36-205, gnl\|galGal2\|chr7 (11042317-11042522)
	36-205, gnl\|hg17\|chr2 (198114013-198114218)
	36-205, gnl\|Hg17\|chr2 (198114206-198114037)
	36-205, gnl\|loxAfr1\|scaffold_33792 (11396-11192)
	36-205, gnl\|mm7\|chr1 (55266521-55266726)
	36-205, gnl\|Mm7\|chr1 (55266712-55266543)
	36-205, gnl\|monDom2\|scaffold_2 (107085531-107085728)
	36-205, gnl\|oryCun1\|scaffold_207751 (50006-49806)
	36-205, gnl\|panTro1\|chr13 (88066671-88066876)
	36-205, gnl\|rheMac2\|chr12 (61038843-61039048)
	36-205, gnl\|rn3\|chr9 (53829995-53830199)
	36-205, gnl\|tetNig1\|chr2 (6916449-6916258)
	36-205, gnl\|xenTro1\|scaffold_48 (2806384-2806188)

	307-828, gnl\|bosTau2\|chr2 (50643111-50642589)
	307-828, gnl\|Hg17\|chr2 (198110775-198110253)
	307-828, gnl\|Mm7\|chr1 (55263805-55263288)