Non-Coding RNA Search

Ss1.1-Pig4-TMW8043P11.5

Sequence:


               
               TGGGTTCTTAAGCACTACTAACACTTGAGTATTAGCAATAATTACAGGAAAATATGCGTA
ACCACATATATCTTAACATTACCAAATTAAAGAGATGAGTTCTGAGGCCTTATCCAAACT
CAGTCATCCAAACTAGGTTATATTTTTCTCCAGTTGATTATCTTTTAATCTTTAAATATG
CTAAAAGTTTTTTTCTTTTTGTAAGCCAGAACTATACTAAGTATAGTAATTATACATTTT
CCCCTTACTCCTCTTTCCTGAATAATTCTGAGCAGGGTAATCAGTGAACAAAGTGTTGAA
TATTGTTCCTAGAAGGTAATTTTCGTAGATGGTTGCATTAGCTCCATAGCAAAATGGAAT
GGTACGTGACTATTTAGAGTAGCTGATGCTTTTATTTTGTTTAATAATTTTCCCGGAAAC
ATAGAGTATGGTGTATATTATCAAAAATTTTTTGATAAGATGTATTTTAAATGTCTTGTA
ATCTTTCCTTTCCCCTCCAAAAAAATCAGGAATCTCTTTAGCAAAAACATTTGGGTTCTA
TAGGATAGAATTACATTTAATCACTGTGAAAAGACTGGTCGGCCTGCATTCGTATGACAA
TAGGGGACCTTAAGAGTTGCTGCTATCCTGGATGGTATGGATTATCATGGCATTGGAACT
TCCATAGTAATGCAGATCCAGTTTCTTGGTGGTACCTGCAGTGTGCAAAATGATTTGACT
TCAGTGACTATATTAGTATCTGGTGTTCCAATTAGGACTAAAGTATATTTATTACAAGAA
GATATTACCCCTTTATTCCCGGGTTCCCTTTATACATGAAGATGAAATGGCTTGGGGAGG
GAAAAAGAAACCTAGGGGAGGGGAAGTATCCTGAAGTGCTATCTCATGAGTGGATTTCAG
TAAATTAAATTCCACAGCTAAATCAATAAATAATGGTACATTTAAATGTTCTGATTTTAA
TAATATAACACGTTTCACATTTATCCACACAGTAACCATGTAATATGTTAATGTAAATAA
AATTGCTTTTGATATTCAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTTCTTAAGCACTACTAACACTTGAGTATTAGCAATAATTACAGGAAAATATGCGTA
ACCACATATATCTTAACATTACCAAATTAAAGAGATGAGTTCTGAGGCCTTATCCAAACT
CAGTCATCCAAACTAGGTTATATTTTTCTCCAGTTGATTATCTTTTAATCTTTAAATATG
CTAAAAGTTTTTTTCTTTTTGTAAGCCAGAACTATACTAAGTATAGTAATTATACATTTT
CCCCTTACTCCTCTTTCCTGAATAATTCTGAGCAGGGTAATCAGTGAACAAAGTGTTGAA
TATTGTTCCTAGAAGGTAATTTTCGTAGATGGTTGCATTAGCTCCATAGCAAAATGGAAT
GGTACGTGACTATTTAGAGTAGCTGATGCTTTTATTTTGTTTAATAATTTTCCCGGAAAC
ATAGAGTATGGTGTATATTATCAAAAATTTTTTGATAAGATGTATTTTAAATGTCTTGTA
ATCTTTCCTTTCCCCTCCAAAAAAATCAGGAATCTCTTTAGCAAAAACATTTGGGTTCTA
TAGGATAGAATTACATTTAATCACTGTGAAAAGACTGGTCGGCCTGCATTCGTATGACAA
TAGGGGACCTTAAGAGTTGCTGCTATCCTGGATGGTATGGATTATCATGGCATTGGAACT
TCCATAGTAATGCAGATCCAGTTTCTTGGTGGTACCTGCAGTGTGCAAAATGATTTGACT
TCAGTGACTATATTAGTATCTGGTGTTCCAATTAGGACTAAAGTATATTTATTACAAGAA
GATATTACCCCTTTATTCCCGGGTTCCCTTTATACATGAAGATGAAATGGCTTGGGGAGG
GAAAAAGAAACCTAGGGGAGGGGAAGTATCCTGAAGTGCTATCTCATGAGTGGATTTCAG
TAAATTAAATTCCACAGCTAAATCAATAAATAATGGTACATTTAAATGTTCTGATTTTAA
TAATATAACACGTTTCACATTTATCCACACAGTAACCATGTAATATGTTAATGTAAATAA
AATTGCTTTTGATATTCAGAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               36-1042, gnl|bosTau2|chr19 (9857839-9858848)
               

               
               36-1042, gnl|Hg17|chr17 (26725952-26726975)
               

               
               36-1042, gnl|Mm7|chr11 (79660555-79661565)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-1042, gnl|bosTau2|chr19 (9857839-9858848)
               

               
               36-1042, gnl|Hg17|chr17 (26725952-26726975)
               

               
               36-1042, gnl|Mm7|chr11 (79660555-79661565)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               vin (0.332557)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               cbr (0.255951)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               cbr (0.255951)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	36-1042, gnl\|bosTau2\|chr19 (9857839-9858848)
	36-1042, gnl\|Hg17\|chr17 (26725952-26726975)
	36-1042, gnl\|Mm7\|chr11 (79660555-79661565)

	vin (0.332557)
	liv (0.292569)
	fce (0.271592)
	cbr (0.255951)
	aor (0.195274)
	sto (0.179824)
	nco (0.161734)
	isp (0.150376)
	ecc (0.115035)
	eje (0.0988338)