Non-Coding RNA Search

Ss1.1-Pig4-TMW8043P14.3

Sequence:


               
               AACTTGATTGTTTACAGTCCCAGTGACAAAACTGGCTTAATTCAGTAACTATCTGATGCT
AAAGAGTTCTGCTTGTCTCTGGAATTAGATTTGTGAAACCTATCTTACTTATTAATGCTA
TGCTTTTTCACCACCATTGCTGATTTTGTTTTCCACAGATTTTTGCATGAGGGCAAAGTG
AAATAAGTTTGCATAATTACACAGATAAACTCTGCTATAGTAGAGGGACAATACACCTGA
AACAACATTGTTTTCCAGCAGGCAGTGCCACTGTATGAGAGTTTAAAATCTCTATTCTTA
AATCCAAATCCCATTTATGAAAGATGATTATAGACCTAAATATGTTCTGTTCAAAGGTTA
GTTGTGCACATTAAATATATAAAAGTCAAGGACTAATTATATTTATAGCACACCTATAAA
TTCCTTCATTCTTATGTTCAGATTTATGTCATTTGGTAATGAAGGCAAGTGCGGAAAATT
CTTTTGTAAATTTTCCTTTTTTTAAAATTACTCAATGAATTTACTACATTTGTAGTTGTA
CAATGATCATCACAATCCAATTTATAGGATTTCCATCCCACAACCCCAGCACATCCCCCA
CCACCACTTATCCTTTGGAGATGATAAGTTTTTCAAAGTCTGTGAGTTAGTATCTGTTCT
GCAAAGAAGTTCAGTCTGTCCTTTTTTCAGATTCCACATGTCAGTGAAAGCATTTGATGT
TGGTGTCTCATTGTATGGTTGACTTCACTTAGTGTGATAATGTCACAATACTTCACATTA
AAGGAACTCTAGGAGATAATTCATAACATTGGAAGAACAAAGGATACAATGTTGAAAGGT
GATCCAGTCTTCAAAAGGAGTAATTTAACAAGGTATTGGAAAGCAGTATGGAGACTCCTC
AGGAAACTAAACATAGAACTACCGTTTGATCCAGCAATCCCACTCCTGGGCATCTATCCA
GAGAAGACCATGACTCGCAAAGACGCATGTACTCCAATGTTCATTGCAGCACTCTTTTCA
ATAGCCAAGACATGGAAACAATCTAAATGTCCATCGACAGACAGTAGATAAAGAAGATGT
GGGTACATATACATGATGGAATATTACTCAGCCATTAAAAGGAACGAAATACCAATGCCC
TTTCAAAGAAGAAAAATAAACAAATGTTGGTATATGAATAGAATGGAATAATAATCAGCA
ATATAAAGATACAAAATAATTACATAAATGAAAAGAAGGCAAGACAAAAGAGTTTCCACT
TAAATTTCACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTGATTGTTTACAGTCCCAGTGACAAAACTGGCTTAATTCAGTAACTATCTGATGCT
AAAGAGTTCTGCTTGTCTCTGGAATTAGATTTGTGAAACCTATCTTACTTATTAATGCTA
TGCTTTTTCACCACCATTGCTGATTTTGTTTTCCACAGATTTTTGCATGAGGGCAAAGTG
AAATAAGTTTGCATAATTACACAGATAAACTCTGCTATAGTAGAGGGACAATACACCTGA
AACAACATTGTTTTCCAGCAGGCAGTGCCACTGTATGAGAGTTTAAAATCTCTATTCTTA
AATCCAAATCCCATTTATGAAAGATGATTATAGACCTAAATATGTTCTGTTCAAAGGTTA
GTTGTGCACATTAAATATATAAAAGTCAAGGACTAATTATATTTATAGCACACCTATAAA
TTCCTTCATTCTTATGTTCAGATTTATGTCATTTGGTAATGAAGGCAAGTGCGGAAAATT
CTTTTGTAAATTTTCCTTTTTTTAAAATTACTCAATGAATTTACTACATTTGTAGTTGTA
CAATGATCATCACAATCCAATTTATAGGATTTCCATCCCACAACCCCAGCACATCCCCCA
CCACCACTTATCCTTTGGAGATGATAAGTTTTTCAAAGTCTGTGAGTTAGTATCTGTTCT
GCAAAGAAGTTCAGTCTGTCCTTTTTTCAGATTCCACATGTCAGTGAAAGCATTTGATGT
TGGTGTCTCATTGTATGGTTGACTTCACTTAGTGTGATAATGTCACAATACTTCACATTA
AAGGAACTCTAGGAGATAATTCATAACATTGGAAGAACAAAGGATACAATGTTGAAAGGT
GATCCAGTCTTCAAAAGGAGTAATTTAACAAGGTATTGGAAAGCAGTATGGAGACTCCTC
AGGAAACTAAACATAGAACTACCGTTTGATCCAGCAATCCCACTCCTGGGCATCTATCCA
GAGAAGACCATGACTCGCAAAGACGCATGTACTCCAATGTTCATTGCAGCACTCTTTTCA
ATAGCCAAGACATGGAAACAATCTAAATGTCCATCGACAGACAGTAGATAAAGAAGATGT
GGGTACATATACATGATGGAATATTACTCAGCCATTAAAAGGAACGAAATACCAATGCCC
TTTCAAAGAAGAAAAATAAACAAATGTTGGTATATGAATAGAATGGAATAATAATCAGCA
ATATAAAGATACAAAATAATTACATAAATGAAAAGAAGGCAAGACAAAAGAGTTTCCACT
TAAATTTCACCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34865460|ref|XP_343448.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34865460|ref|XP_343448.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               860-1131, - strand, RNAz p=0.992569

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               860-1131, - strand, RNAz p=0.992569

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               4-510, gnl|bosTau2|chr10 (3296200-3295695)
               

               
               4-510, gnl|Hg17|chr5 (77598403-77597897)
               


               
               596-779, gnl|bosTau2|chr1 (61391804-61391991)
               


               
               630-764, gnl|bosTau2|chr10 (49169136-49169271)
               


               
               860-1229, gnl|bosTau2|chr10 (38273919-38274288)
               


               
               873-1134, gnl|bosTau2|chr10 (51836660-51836400)
               


               
               878-1131, gnl|bosTau2|chr10 (56834781-56835034)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-510, gnl|bosTau2|chr10 (3296200-3295695)
               

               
               4-510, gnl|Hg17|chr5 (77598403-77597897)
               


               
               596-779, gnl|bosTau2|chr1 (61391804-61391991)
               


               
               630-764, gnl|bosTau2|chr10 (49169136-49169271)
               


               
               860-1229, gnl|bosTau2|chr10 (38273919-38274288)
               


               
               873-1134, gnl|bosTau2|chr10 (51836660-51836400)
               


               
               878-1131, gnl|bosTau2|chr10 (56834781-56835034)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pro (0.512033)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)

	4-510, gnl\|bosTau2\|chr10 (3296200-3295695)
	4-510, gnl\|Hg17\|chr5 (77598403-77597897)

	596-779, gnl\|bosTau2\|chr1 (61391804-61391991)

	630-764, gnl\|bosTau2\|chr10 (49169136-49169271)

	860-1229, gnl\|bosTau2\|chr10 (38273919-38274288)

	873-1134, gnl\|bosTau2\|chr10 (51836660-51836400)

	878-1131, gnl\|bosTau2\|chr10 (56834781-56835034)