Non-Coding RNA Search

Ss1.1-Pig4-TMW8043P15.5

Sequence:


               
               TTTGCACAGCTGCACACGGAAATAACTTAGGCACTTCCGATTTTGAAAAGAGTTAAGTTC
TCCTGACTTTATTTGGAGACACCAGTAACAAAAACAGCCCACCAATCAGACAGCTAAGCT
GGTGGCTGTTCACCAGGCTGCAGCCCCACACCCTGTGGCCTCAACCCTAATGGAATCAGG
CTCTGCACCCCACACTATTCTGGTGATTTTTTCCCCTCTAACATAACACTGGACTGTTTC
CTGTTTACTTGGGTGATTGCAACTACAAAGGCGGACTCAAAGCAAAGCACAATCACGCAG
CTGAGTTCTGGAATTTCTATTGAGGACTCTGAAGGGGGAGGTTTCAAAAGCCAGACAGGT
CTGTGGAGCGGCAGGCAGGTCCTCCGGACCCCCACCACTGAGCTGGCCCTTTGAGTGAGA
ATGCTGCATCTTTCTACGGATCTTTCCTGATAAGACCGAAGATGGGAGTTTCCTTTTCAA
AATGCACTTTGCTTTTTTTGTATGTTTTGTTATGTTGAGAGGTTTCTAAAGAAAAGATTT
TATGTAATTATAAGAGGAAGTGTAGTGAATTGTACAGCTGTTGTAATAATGACCTATTTC
TATATAAAATAAAATTGTATGGATTATGTGTAAATTATTTTGTATCTAAGACACCAGTTC
CTTTCCCAAATATAAAAGGATAAAAAGTTTTTCTTGTGTATTTCTGTGAATGGACTTTTT
GTAATAAATTAACAAATTTGTACGATTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCACAGCTGCACACGGAAATAACTTAGGCACTTCCGATTTTGAAAAGAGTTAAGTTC
TCCTGACTTTATTTGGAGACACCAGTAACAAAAACAGCCCACCAATCAGACAGCTAAGCT
GGTGGCTGTTCACCAGGCTGCAGCCCCACACCCTGTGGCCTCAACCCTAATGGAATCAGG
CTCTGCACCCCACACTATTCTGGTGATTTTTTCCCCTCTAACATAACACTGGACTGTTTC
CTGTTTACTTGGGTGATTGCAACTACAAAGGCGGACTCAAAGCAAAGCACAATCACGCAG
CTGAGTTCTGGAATTTCTATTGAGGACTCTGAAGGGGGAGGTTTCAAAAGCCAGACAGGT
CTGTGGAGCGGCAGGCAGGTCCTCCGGACCCCCACCACTGAGCTGGCCCTTTGAGTGAGA
ATGCTGCATCTTTCTACGGATCTTTCCTGATAAGACCGAAGATGGGAGTTTCCTTTTCAA
AATGCACTTTGCTTTTTTTGTATGTTTTGTTATGTTGAGAGGTTTCTAAAGAAAAGATTT
TATGTAATTATAAGAGGAAGTGTAGTGAATTGTACAGCTGTTGTAATAATGACCTATTTC
TATATAAAATAAAATTGTATGGATTATGTGTAAATTATTTTGTATCTAAGACACCAGTTC
CTTTCCCAAATATAAAAGGATAAAAAGTTTTTCTTGTGTATTTCTGTGAATGGACTTTTT
GTAATAAATTAACAAATTTGTACGATTAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-747, gnl|bosTau2|chr8 (20215025-20215784)
               

               
               1-747, gnl|Hg17|chr2 (101071054-101071809)
               

               
               1-747, gnl|Mm7|chr1 (39603882-39604621)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-747, gnl|bosTau2|chr8 (20215025-20215784)
               

               
               1-747, gnl|Hg17|chr2 (101071054-101071809)
               

               
               1-747, gnl|Mm7|chr1 (39603882-39604621)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cki (0.330469)
               

               
               spc (0.226732)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               spc (0.226732)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	1-747, gnl\|bosTau2\|chr8 (20215025-20215784)
	1-747, gnl\|Hg17\|chr2 (101071054-101071809)
	1-747, gnl\|Mm7\|chr1 (39603882-39604621)

	cki (0.330469)
	spc (0.226732)
	duo (0.172801)
	fco (0.157208)
	csk (0.140746)
	lyg (0.133103)
	bla (0.124347)
	tra (0.123092)