Non-Coding RNA Search

Ss1.1-Pig4-TMW8043P18.3

Sequence:


               
               CTCTTATCAACTTACCTGGAAAGATACAAAGTCCAGAATAATTTATATCACCACTGTGTC
ATTAACAAGCTCTTGTCTCATGGAGTGCCTCTGCCTAATTGGCTTATAAACAGTTACAAG
AAGGTTGATGCAGCTGAGTTGCTCCGTCTATACTTAAACTACGACCTTTTAGAAGAAGCT
GTGGACTTGGTGTCTGAATATGTGGATGCTGTCTTGGGAAAAGGACATCAGTACTTTGGA
ATTGAGTTTCCACTGTCTGCAACAGCTCCAATGGTGTGGCTCCCATATTCTTCTATTGAT
CAACTTCTCCAGGCGCTGGGAGAGAACAGCGCCAACAGTCACAACATTGCACTGTCCCAG
AAAATACTTGACAAATTGGAGGACTACCAGCAAAAAGTTGATAAGGCAACAAGGGATTTA
TTACATCGTCGGCTCTTGTGATCTGGATGGTTGCCCAGCCTTTGTAACCGCTTGGTGCCT
CTTAGGGCTTAAGACTTTATTTACCCTACAGGAAACCTGTACTCCAGGCCAATTTTTATA
CCAGTAAATGATGTGTGCGACAGTCAAGTCTGCATTCTGCACAAGAGAGAAGGGGAGATG
AGTCACAGGACCTGTGCTTGCTGGTGGTGCTAACACACAATTTCTGGTTTTCAAACTTGG
TCTCAAACAGCTGCTTTTGTATATGATTCACAAGCTTTTTTAGAGTTTATATTTTTTTAA
ACTACCGAAGACATTCTTTATCTGCAAATTAAAACCCACTTTCACTGTCCAAAATAGCTG
ATGGTTGTTGGTTTGTTGTAGCTGACCACCAAAAGCAGTCACTGCAAATCCTTTCATTCT
TCCTATCACTTTTTGTATTTCAATGGAATTATTTTGGTCCAGAACTGACATGTATTTTCT
GTATTGCAAACAGAGGCTAATGATTTTGCATACTCTTCATTATTTATTGTGGAATTTTTT
TATGATCTTCAATAAAGTATTAAATAATTTGCCGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTATCAACTTACCTGGAAAGATACAAAGTCCAGAATAATTTATATCACCACTGTGTC
ATTAACAAGCTCTTGTCTCATGGAGTGCCTCTGCCTAATTGGCTTATAAACAGTTACAAG
AAGGTTGATGCAGCTGAGTTGCTCCGTCTATACTTAAACTACGACCTTTTAGAAGAAGCT
GTGGACTTGGTGTCTGAATATGTGGATGCTGTCTTGGGAAAAGGACATCAGTACTTTGGA
ATTGAGTTTCCACTGTCTGCAACAGCTCCAATGGTGTGGCTCCCATATTCTTCTATTGAT
CAACTTCTCCAGGCGCTGGGAGAGAACAGCGCCAACAGTCACAACATTGCACTGTCCCAG
AAAATACTTGACAAATTGGAGGACTACCAGCAAAAAGTTGATAAGGCAACAAGGGATTTA
TTACATCGTCGGCTCTTGTGATCTGGATGGTTGCCCAGCCTTTGTAACCGCTTGGTGCCT
CTTAGGGCTTAAGACTTTATTTACCCTACAGGAAACCTGTACTCCAGGCCAATTTTTATA
CCAGTAAATGATGTGTGCGACAGTCAAGTCTGCATTCTGCACAAGAGAGAAGGGGAGATG
AGTCACAGGACCTGTGCTTGCTGGTGGTGCTAACACACAATTTCTGGTTTTCAAACTTGG
TCTCAAACAGCTGCTTTTGTATATGATTCACAAGCTTTTTTAGAGTTTATATTTTTTTAA
ACTACCGAAGACATTCTTTATCTGCAAATTAAAACCCACTTTCACTGTCCAAAATAGCTG
ATGGTTGTTGGTTTGTTGTAGCTGACCACCAAAAGCAGTCACTGCAAATCCTTTCATTCT
TCCTATCACTTTTTGTATTTCAATGGAATTATTTTGGTCCAGAACTGACATGTATTTTCT
GTATTGCAAACAGAGGCTAATGATTTTGCATACTCTTCATTATTTATTGTGGAATTTTTT
TATGATCTTCAATAAAGTATTAAATAATTTGCCGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32425489|gb|AAH08700.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32425489|gb|AAH08700.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               114-261, gnl|bosTau2|chr15 (49578341-49578195)
               

               
               114-261, gnl|Hg17|chr11 (47761332-47761191)
               

               
               114-261, gnl|Mm7|chr2 (90583491-90583625)
               


               
               352-993, gnl|bosTau2|chr15 (49575866-49575222)
               

               
               352-993, gnl|Hg17|chr11 (47757322-47756690)
               

               
               352-993, gnl|Mm7|chr2 (90586131-90586763)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-261, gnl|bosTau2|chr15 (49578341-49578195)
               

               
               114-261, gnl|Hg17|chr11 (47761332-47761191)
               

               
               114-261, gnl|Mm7|chr2 (90583491-90583625)
               


               
               352-993, gnl|bosTau2|chr15 (49575866-49575222)
               

               
               352-993, gnl|Hg17|chr11 (47757322-47756690)
               

               
               352-993, gnl|Mm7|chr2 (90586131-90586763)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cte (0.29274)
               

               
               thg (0.253582)
               

               
               cmu (0.186393)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               thg (0.253582)
               

               
               cmu (0.186393)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

	114-261, gnl\|bosTau2\|chr15 (49578341-49578195)
	114-261, gnl\|Hg17\|chr11 (47761332-47761191)
	114-261, gnl\|Mm7\|chr2 (90583491-90583625)

	352-993, gnl\|bosTau2\|chr15 (49575866-49575222)
	352-993, gnl\|Hg17\|chr11 (47757322-47756690)
	352-993, gnl\|Mm7\|chr2 (90586131-90586763)

	cte (0.29274)
	thg (0.253582)
	cmu (0.186393)
	ova (0.129132)
	cty (0.10408)