Non-Coding RNA Search

Ss1.1-Pig4-TMW8043P20.3

Sequence:


               
               AGCAGAGTATCCCATGAACTGTGAATGACTCTGAGGTTGATTTCCTTTATTGCATCTCCT
GCAATGTATAATGATTGCCGAAACGTATCTTTTAAAATTTCAGAAGTTTGTCTGTCTTTG
CTGTTAACGGAAGGAGTGTGCACACACGTGTAGTACAGGTGGACTGGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGGTTGATTTTTGGCACTATGTGTGTCACTCCTCCACCCTGAGAA
GACATGGTGGCTCAGGGCTCAGGACCGGTGTGCCCCCATCTCAGGATGACATTTCTGGTG
GCTTCTGAACTTGTTAAAGATGATAGAATCTGATGAACCCCACTTAAAGAATAAGGAACA
TTCGAATCTCTTGGAAAGACCGTCAGGAGGAAAGCAGTCAGCCAGCCAGGCCCGTCCTGC
CTGCTGATGCCAAGGGCTGGTAAGGGGTAATCAAAAAGTTACCCTTTCTCTCGGAAAGCA
GAGAGAAAATCCCGACAGCTCTGAACTCTGATTTCCTTTTTCTTGGTGCATCTGGGGAGT
ATTGTATGATTAGGCATAACCCTTACACACATAGAAATTAAGAAAAGCAAGATTTTTTTG
TTAAAATGCAATCACTGGCAAGAAAGGTACAATAAAGCCAGCCTCTCCTGGAGACCAGGG
TTGGCAGGGCACTGCGAGGGGAGAGTGACGTCCTTGCGAAACCATGTCCACAAAACAAGA
GCTTCACGCAGATGCCCAAGTAATTGCAAAGAGTACAGCCGGCCCGCCGTGTACTGGGCT
CTGTAGCCATGGAGTCAACCAGCCGCAGACTCAGAGGGCCTGCTGTACTGTGCCATTTTA
CGTAAGGGACTTGGACCTCCACAGATTTGGGTTATCTGGGGGGGTCCTGCAACCAATCCC
CCATGGATACCGAAGGATGACTGTGTATTATATTTGCTCTAGATCTCTAGTGGGTAATCT
TTTATGCAGTTTGAATGAATGAAGTATTTTCCTCATAGTTTTATTTTTATGTATTTTTCT
TTGATGAATGATTGGTTCCAAGGCTTCTGCCACACTCCAAAAATATTTGTGCGGCTGCTT
TAAAACAAAAAAAAAACAAAACAAAAAAACCACAACTGTGTGTCTGGTCACTTCTTTCTC
TAAAATTTTATCTCATTGCCTGGCAATCAGTCTTCTCTCAATATACTTGTCCTAGCACAT
TATGTACATGGGAAATGTAAACAGATGTGAAGGAGGACCAGAAAAAAATGAGTTCATATT
AAAAAACAGTGTATTGTACATTTTGGCTTCACATGTTTTAACTTTTTTAAGAAAAAAAAG
TTGCATGAATGGGAAAAAAAAAATCTGTATACAGTATCTGTAAAACTGTCTTCTCTGTTT
CACTTTCTTGCTCATACCCCCCAACAGCAAGAAGTCCATCTGGTGCATGACTGTCTTCAA
ACACCTAAGAGTCATGCCACTGATCCTTTGGTTTGAAGCACCTCATCCTTTCTTTTGAAG
CGAACACTATCACATTGCATTCATCCTGAGGATTTTCTCTAACCATATGTTGCCATAAAA
TAACAACTACCACTTCTCCTCTCAAGAATCAAAACCAGTTTGATTTGGGAATCTTCTCCT
TTCCAAACGAAATAGAGATGCAGTACTTAACCTTCCTTGGTGTTTGTAGATATTGCCTTG
TGTATTCCATCTAAAACCGTAATCTAGTTTGTAAAAGAGATGGTGACGCATGTAAATAAA
GCATCAATGACACTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGAGTATCCCATGAACTGTGAATGACTCTGAGGTTGATTTCCTTTATTGCATCTCCT
GCAATGTATAATGATTGCCGAAACGTATCTTTTAAAATTTCAGAAGTTTGTCTGTCTTTG
CTGTTAACGGAAGGAGTGTGCACACACGTGTAGTACAGGTGGACTGGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGGTTGATTTTTGGCACTATGTGTGTCACTCCTCCACCCTGAGAA
GACATGGTGGCTCAGGGCTCAGGACCGGTGTGCCCCCATCTCAGGATGACATTTCTGGTG
GCTTCTGAACTTGTTAAAGATGATAGAATCTGATGAACCCCACTTAAAGAATAAGGAACA
TTCGAATCTCTTGGAAAGACCGTCAGGAGGAAAGCAGTCAGCCAGCCAGGCCCGTCCTGC
CTGCTGATGCCAAGGGCTGGTAAGGGGTAATCAAAAAGTTACCCTTTCTCTCGGAAAGCA
GAGAGAAAATCCCGACAGCTCTGAACTCTGATTTCCTTTTTCTTGGTGCATCTGGGGAGT
ATTGTATGATTAGGCATAACCCTTACACACATAGAAATTAAGAAAAGCAAGATTTTTTTG
TTAAAATGCAATCACTGGCAAGAAAGGTACAATAAAGCCAGCCTCTCCTGGAGACCAGGG
TTGGCAGGGCACTGCGAGGGGAGAGTGACGTCCTTGCGAAACCATGTCCACAAAACAAGA
GCTTCACGCAGATGCCCAAGTAATTGCAAAGAGTACAGCCGGCCCGCCGTGTACTGGGCT
CTGTAGCCATGGAGTCAACCAGCCGCAGACTCAGAGGGCCTGCTGTACTGTGCCATTTTA
CGTAAGGGACTTGGACCTCCACAGATTTGGGTTATCTGGGGGGGTCCTGCAACCAATCCC
CCATGGATACCGAAGGATGACTGTGTATTATATTTGCTCTAGATCTCTAGTGGGTAATCT
TTTATGCAGTTTGAATGAATGAAGTATTTTCCTCATAGTTTTATTTTTATGTATTTTTCT
TTGATGAATGATTGGTTCCAAGGCTTCTGCCACACTCCAAAAATATTTGTGCGGCTGCTT
TAAAACAAAAAAAAAACAAAACAAAAAAACCACAACTGTGTGTCTGGTCACTTCTTTCTC
TAAAATTTTATCTCATTGCCTGGCAATCAGTCTTCTCTCAATATACTTGTCCTAGCACAT
TATGTACATGGGAAATGTAAACAGATGTGAAGGAGGACCAGAAAAAAATGAGTTCATATT
AAAAAACAGTGTATTGTACATTTTGGCTTCACATGTTTTAACTTTTTTAAGAAAAAAAAG
TTGCATGAATGGGAAAAAAAAAATCTGTATACAGTATCTGTAAAACTGTCTTCTCTGTTT
CACTTTCTTGCTCATACCCCCCAACAGCAAGAAGTCCATCTGGTGCATGACTGTCTTCAA
ACACCTAAGAGTCATGCCACTGATCCTTTGGTTTGAAGCACCTCATCCTTTCTTTTGAAG
CGAACACTATCACATTGCATTCATCCTGAGGATTTTCTCTAACCATATGTTGCCATAAAA
TAACAACTACCACTTCTCCTCTCAAGAATCAAAACCAGTTTGATTTGGGAATCTTCTCCT
TTCCAAACGAAATAGAGATGCAGTACTTAACCTTCCTTGGTGTTTGTAGATATTGCCTTG
TGTATTCCATCTAAAACCGTAATCTAGTTTGTAAAAGAGATGGTGACGCATGTAAATAAA
GCATCAATGACACTCAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1142-1261, - strand, RNAz p=0.790966

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1142-1261, - strand, RNAz p=0.790966

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               422-1095, gnl|bosTau2|chr11 (81532198-81532837)
               


               
               1103-1755, gnl|bosTau2|chr11 (81532826-81533469)
               

               
               1103-1755, gnl|Hg17|chr6 (109112034-109112663)
               

               
               1103-1755, gnl|Mm7|chr10 (41993109-41992508)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               422-1095, gnl|bosTau2|chr11 (81532198-81532837)
               


               
               1103-1755, gnl|bosTau2|chr11 (81532826-81533469)
               

               
               1103-1755, gnl|Hg17|chr6 (109112034-109112663)
               

               
               1103-1755, gnl|Mm7|chr10 (41993109-41992508)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               gul (1.06553)
               

               
               ret (0.7724)
               

               
               rec (0.519211)
               

               
               mgp (0.461361)
               

               
               amn (0.417711)
               

               
               thg (0.380373)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               fat (0.294855)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (1.06553)
               

               
               ret (0.7724)
               

               
               rec (0.519211)
               

               
               mgp (0.461361)
               

               
               amn (0.417711)
               

               
               thg (0.380373)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               fat (0.294855)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	422-1095, gnl\|bosTau2\|chr11 (81532198-81532837)

	1103-1755, gnl\|bosTau2\|chr11 (81532826-81533469)
	1103-1755, gnl\|Hg17\|chr6 (109112034-109112663)
	1103-1755, gnl\|Mm7\|chr10 (41993109-41992508)

	gul (1.06553)
	ret (0.7724)
	rec (0.519211)
	mgp (0.461361)
	amn (0.417711)
	thg (0.380373)
	sin (0.349895)
	vin (0.332557)
	fat (0.294855)
	pla (0.267344)
	ova (0.258264)
	bla (0.248694)
	cbe (0.239234)
	ece (0.229305)
	ldo (0.194005)
	ton (0.1755)
	fbs (0.175346)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	csp (0.161186)
	mga (0.160205)
	isp (0.150376)
	bfe (0.149858)
	hyp (0.142837)
	tra (0.123092)
	eru (0.120048)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)