Non-Coding RNA Search

Ss1.1-Pig4-TMW8044A10.3

Sequence:


               
               AACGGAGGGGAAACACGTCTGGTGAATAAACCCACCAAGATACCAGCGGAATGAACAGAA
GGCAGACCTCTAAACAGAGACGAAACCTATAAATGCAGCATTGGGAACCTTTCGTCAAGC
TGAGCCAGAGGAATGTTCCGAGGAGCCAGAAACATTTGGCTCTCCCTAGCTGGAAGAGAG
AACAATCTGCTCCACCAGACACTGGGAACGTGGCACATCCCGAGCGCAGTGCGCGCTTGC
AAGGCTTCCCTTGGTTTCTGAGCGGTACCTGGATACCACGGTTGCTATGGAACTCGCGCT
ACGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATTATTTTTCTACTATTTATT
GAACTTTCAAACACTCTCAAACTTTGGGGGAAAGACAAGGAAACACATGAGAAATCGTCC
CTAGCTGTTTTGTGTGTAATGAAGTGTTAAGGAGTTCTCTTTCTTATTTAACTGATACCA
TCCCACTGCCTCGCTCCACAAAAGGGGAAAATGAAGAAATCTGTCTTTCTGATTTGTTTA
CATACATTTGCTTTAGAACGTCATGTCATGGAACTACACATCTGGATTTGCAATTCAGTA
TTCTTTCTCTGTGTTTGACAGAGGCGGGGAGGGGCAGAGGAATCTAGCTTTTAAAGAAAT
GTTACATTTCTTTTTAACTCATTCCCATTTCCCATCATACAGTGCTTTTCTTAGGTTTCG
TAGAACCCCAGCCTCTCAACTAAGGGAGGCTTGGCTTATGGTCCTTGTTTTAGAGACTAT
AAATTTTAAAATGTCCCACTTTGATTCCGGGACTATTGAACACAGAAAGGAAGAAGTTTG
TCAAATTCAAAATTCTGATTCTTAATCAAAGATTTCTTTTGAGATCCTAGTTAAAAGCTG
CTGCCAGTTGTCCAAGAAGATACCCACCAAACTGCTTTGTGATGTATACCGAGGTGAATC
AAATCTGGCTAGTAGAACATGGGGCATTGTAACTTTAAAGTAGTGTTCTAATTACAGTGA
TGTATTTTAGATTCACATTTCGTGATCCAAATATGTTATAAAGATATTCTTGCACCGTGT
GTGGTAAATCTCCGTTTATATGTAGTTGGAAAAAATTCACTGATGTTTTAATGATAGGGT
ATTACGATATAATGTAAAGTAAAAAAAAAAAAAAAAAAAAAAATTGGTTCTTCAGCCGTA
CAGAAAGTAAACTATATGTGTGCTATCAGGAAACCTCTTCATACTGTGTATAAAATTGCA
GTCTAGTGAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACGGAGGGGAAACACGTCTGGTGAATAAACCCACCAAGATACCAGCGGAATGAACAGAA
GGCAGACCTCTAAACAGAGACGAAACCTATAAATGCAGCATTGGGAACCTTTCGTCAAGC
TGAGCCAGAGGAATGTTCCGAGGAGCCAGAAACATTTGGCTCTCCCTAGCTGGAAGAGAG
AACAATCTGCTCCACCAGACACTGGGAACGTGGCACATCCCGAGCGCAGTGCGCGCTTGC
AAGGCTTCCCTTGGTTTCTGAGCGGTACCTGGATACCACGGTTGCTATGGAACTCGCGCT
ACGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATTATTTTTCTACTATTTATT
GAACTTTCAAACACTCTCAAACTTTGGGGGAAAGACAAGGAAACACATGAGAAATCGTCC
CTAGCTGTTTTGTGTGTAATGAAGTGTTAAGGAGTTCTCTTTCTTATTTAACTGATACCA
TCCCACTGCCTCGCTCCACAAAAGGGGAAAATGAAGAAATCTGTCTTTCTGATTTGTTTA
CATACATTTGCTTTAGAACGTCATGTCATGGAACTACACATCTGGATTTGCAATTCAGTA
TTCTTTCTCTGTGTTTGACAGAGGCGGGGAGGGGCAGAGGAATCTAGCTTTTAAAGAAAT
GTTACATTTCTTTTTAACTCATTCCCATTTCCCATCATACAGTGCTTTTCTTAGGTTTCG
TAGAACCCCAGCCTCTCAACTAAGGGAGGCTTGGCTTATGGTCCTTGTTTTAGAGACTAT
AAATTTTAAAATGTCCCACTTTGATTCCGGGACTATTGAACACAGAAAGGAAGAAGTTTG
TCAAATTCAAAATTCTGATTCTTAATCAAAGATTTCTTTTGAGATCCTAGTTAAAAGCTG
CTGCCAGTTGTCCAAGAAGATACCCACCAAACTGCTTTGTGATGTATACCGAGGTGAATC
AAATCTGGCTAGTAGAACATGGGGCATTGTAACTTTAAAGTAGTGTTCTAATTACAGTGA
TGTATTTTAGATTCACATTTCGTGATCCAAATATGTTATAAAGATATTCTTGCACCGTGT
GTGGTAAATCTCCGTTTATATGTAGTTGGAAAAAATTCACTGATGTTTTAATGATAGGGT
ATTACGATATAATGTAAAGTAAAAAAAAAAAAAAAAAAAAAAATTGGTTCTTCAGCCGTA
CAGAAAGTAAACTATATGTGTGCTATCAGGAAACCTCTTCATACTGTGTATAAAATTGCA
GTCTAGTGAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               680-784, + strand, RNAz p=0.974449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               680-784, + strand, RNAz p=0.974449

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BX537603, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX537603, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1272, gnl|bosTau2|chr3 (54962466-54961147)
               

               
               1-1272, gnl|Hg17|chr1 (64869477-64870740)
               

               
               1-1272, gnl|Mm7|chr4 (100379699-100380961)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1272, gnl|bosTau2|chr3 (54962466-54961147)
               

               
               1-1272, gnl|Hg17|chr1 (64869477-64870740)
               

               
               1-1272, gnl|Mm7|chr4 (100379699-100380961)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fat (0.294855)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	1-1272, gnl\|bosTau2\|chr3 (54962466-54961147)
	1-1272, gnl\|Hg17\|chr1 (64869477-64870740)
	1-1272, gnl\|Mm7\|chr4 (100379699-100380961)

	fat (0.294855)
	fcc (0.197785)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	bfe (0.149858)
	ret (0.128733)
	tra (0.123092)
	ebs (0.118301)
	ecc (0.115035)
	eje (0.0988338)