Non-Coding RNA Search

Ss1.1-Pig4-TMW8044A14.3

Sequence:


               
               TACAAATGGCAGCCAACAATGCTATTGATCTGGAGGCTTGAGCAATCACTTTGTGATGAA
ATTACATGAAATGATGACTTACACTGCCTCAGAAAAAGGGTAAAAGGCAGTATATTAATG
GGCTCTAATACAGGAAATAGGATTCATGTTTTAGACTGGATCTCCTCGGTGGCCTGAGAA
CATCCACTTGGCTGTTGAAATAGCTGAAACAAGGTGGAGGTAAAGATTTGACCTTTCCTG
AAGGAGGAAGACATGTAGGACTTGATACACAGTAACTCTCATGGGTGTTTTTCAGCTTAA
CTATCATGACCATGTTGCAAATGCATAAATGATAACACTTGTTCAGAATTTTGCCCCCAG
AAATGAAACTGCTGCTTTTGAAAACCTTGGGGAAGGTGCTTTAAAAAGTCTTAGAGTTAA
AATGATATTGCTTTAAACAAACTCTAGAAAAGCCAAATGCTTTTTACAGAGCTAGCTTGA
TTGCCTTTTGATTTGCAACAGTCAGTTTTCCTTCCCAGCTGGCAGAGGTAACTATGAAAA
CATTTGTTCCTCAAATCCAAGGAGCCAAGAACCAACTGGTGAGACTGGGCACCAAATGGC
AGCAGCTGGGATGATGGTATAACTGCCTGCTTCACATCTTATAAGATTTTGAGGTGGCCT
GAAGGCTGAAAGCAAATGTGACTAACAAGAAAACACCATAAAAGCAAGCAAGCCAGTAGG
AAACTTAACTCCTCACTCTTCCACTTCTCTAGTTTTTCCCCTGCCTTCTACAGAGCCTTT
CTATTATGTCTTTATCCAAGAATATTGCTTATATTTTCGTTCTGGGGACAAGTTGGGAGG
GAGCCGAGTTCTCTAATGTTACATAGCAGGGAATGGGGTTAGAGGTCAAGAAGTGGTTAG
AACAATAGGGAAGAGAGTATGGTTGCTAAGTGCCCTGAGAACAGACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACAAATGGCAGCCAACAATGCTATTGATCTGGAGGCTTGAGCAATCACTTTGTGATGAA
ATTACATGAAATGATGACTTACACTGCCTCAGAAAAAGGGTAAAAGGCAGTATATTAATG
GGCTCTAATACAGGAAATAGGATTCATGTTTTAGACTGGATCTCCTCGGTGGCCTGAGAA
CATCCACTTGGCTGTTGAAATAGCTGAAACAAGGTGGAGGTAAAGATTTGACCTTTCCTG
AAGGAGGAAGACATGTAGGACTTGATACACAGTAACTCTCATGGGTGTTTTTCAGCTTAA
CTATCATGACCATGTTGCAAATGCATAAATGATAACACTTGTTCAGAATTTTGCCCCCAG
AAATGAAACTGCTGCTTTTGAAAACCTTGGGGAAGGTGCTTTAAAAAGTCTTAGAGTTAA
AATGATATTGCTTTAAACAAACTCTAGAAAAGCCAAATGCTTTTTACAGAGCTAGCTTGA
TTGCCTTTTGATTTGCAACAGTCAGTTTTCCTTCCCAGCTGGCAGAGGTAACTATGAAAA
CATTTGTTCCTCAAATCCAAGGAGCCAAGAACCAACTGGTGAGACTGGGCACCAAATGGC
AGCAGCTGGGATGATGGTATAACTGCCTGCTTCACATCTTATAAGATTTTGAGGTGGCCT
GAAGGCTGAAAGCAAATGTGACTAACAAGAAAACACCATAAAAGCAAGCAAGCCAGTAGG
AAACTTAACTCCTCACTCTTCCACTTCTCTAGTTTTTCCCCTGCCTTCTACAGAGCCTTT
CTATTATGTCTTTATCCAAGAATATTGCTTATATTTTCGTTCTGGGGACAAGTTGGGAGG
GAGCCGAGTTCTCTAATGTTACATAGCAGGGAATGGGGTTAGAGGTCAAGAAGTGGTTAG
AACAATAGGGAAGAGAGTATGGTTGCTAAGTGCCCTGAGAACAGACTG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               9-303, gnl|bosTau2|chr20 (14526483-14526190)
               

               
               9-303, gnl|Hg17|chr5 (52416904-52416545)
               

               
               9-303, gnl|Mm7|chr13 (112013432-112013701)
               


               
               323-945, gnl|bosTau2|chr20 (14526198-14525574)
               

               
               323-945, gnl|Hg17|chr5 (52416553-52415906)
               

               
               323-945, gnl|Mm7|chr13 (112013693-112014817)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-303, gnl|bosTau2|chr20 (14526483-14526190)
               

               
               9-303, gnl|Hg17|chr5 (52416904-52416545)
               

               
               9-303, gnl|Mm7|chr13 (112013432-112013701)
               


               
               323-945, gnl|bosTau2|chr20 (14526198-14525574)
               

               
               323-945, gnl|Hg17|chr5 (52416553-52415906)
               

               
               323-945, gnl|Mm7|chr13 (112013693-112014817)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	9-303, gnl\|bosTau2\|chr20 (14526483-14526190)
	9-303, gnl\|Hg17\|chr5 (52416904-52416545)
	9-303, gnl\|Mm7\|chr13 (112013432-112013701)

	323-945, gnl\|bosTau2\|chr20 (14526198-14525574)
	323-945, gnl\|Hg17\|chr5 (52416553-52415906)
	323-945, gnl\|Mm7\|chr13 (112013693-112014817)