Ss1.1-Pig4-TMW8044A15.5
|
GCCACAAACCCCTTCCTCCTCCCAACCCGCCTCTGAGATTCATATATAGCCTTTAACACT
ATGCAACTTTGTACTTTGCGTAGCGGGGGAAAGAAACTATTATCTGACACACTGGTGCTA
TTAATTATTTCAAATTTATATTTTTGTGTGAATGTTTGTTTGTTTATCATGATTATAGAG
TAAGAAGTTTATGTAAATATACTTGGCCCTATTTCTAGAACGGCACTGCCTGCTCACTTC
ACTTCATTTCCCCTCTCCACCGGCACAGCGTGTCGCATACCTCCTTCCCTCCCATCTGCG
CGTCTTTGGATTGAATTTGTTCCCCGTTGCTTGGCTCTTCGCCTTGTGTTTGCAGCATGT
AGCATGTCCGTTCATTCACGTCCAACGTCCACCTGCTTTCCTCTACACACAGCCACGAGA
AAGAGGTACCTCGAGCCCTCTTCCCCTGCAGACCTGACGGTCCTCAACCGTAGCATCATG
TGTCTGCTCCACAGCAGGGATGCTGGCTTGACAGGGGACAGGGAGGGATGGAGTTAGGAA
AGGGCATCTTCGCCATGGCTGTGCGTCTCAACAGGAGTGAGCTAGAAATGCTCTTTCTGG
CAGTTGGGTGCGCTGGATGGGTCATTTTTGCAAGAGGGTGCATAATTACTGAGCGCGCAG
GCATCAGAGATGGTGCTGCAGACAGGAGGAGCGGGAGAGGTGTCGAAGCCGCTTCTCCCC
GTTCTGTCTCCTTGCATCCCACCGTTGACTACCGAGGTCGGGATCCTCCTAAGCATCCTG
TTGCAGAGGGCCTGGCTCTTCCTGACCACGTTGTTCCCGTCGGTGTTTCCTAGCCAGTTC
CTCTGGTTCAGCAGCCGTGTACTAACAGACGTCTTGGTCAAGGTTGCAGGAAAAGGACCA
AAGATAGACTGCGAAGGTCGTTTTCCATCTAGCCTGCGGGTCAAGTTCCCTCCAGTCGGT
CTTAGCCACGGTGAAATTCAGGCGATTTGTTGTTGTCGTCGTTGTCATTTCTTTTCTCCT
TTTCCATCTGTGTGGTATATTTTTAAACAGAAGTGTATTTTTAAAATAAAAGTCCTTTAT
AAGATGATACCTTCATTACACTCCTGCAATATAGCCATTATATTACTGTATAGTCCCAGT
TTATCTGTACTTTATGTAATAAAACAGACAAGGTGGCTGCTGCAGAATGCTGGGTGGCAT
AGGGGACAAAGACAGCTGTACCCTGGAACTTTGCCTTTGAATTCCAACTGTGGCCCTTTT
CCATGTGCCTTCACTTTAGCTGTTCGCCTTAATCTCTACAGTCTTGCTCTCCGGGGTGGT
AAATAAAATGCAACACTTGGCATTTTTTATGTTAAAAAAACAGTATTTTATTTATAATAA
AATCTGAATATTTGTAACCCCGCA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCACAAACCCCTTCCTCCTCCCAACCCGCCTCTGAGATTCATATATAGCCTTTAACACT
ATGCAACTTTGTACTTTGCGTAGCGGGGGAAAGAAACTATTATCTGACACACTGGTGCTA
TTAATTATTTCAAATTTATATTTTTGTGTGAATGTTTGTTTGTTTATCATGATTATAGAG
TAAGAAGTTTATGTAAATATACTTGGCCCTATTTCTAGAACGGCACTGCCTGCTCACTTC
ACTTCATTTCCCCTCTCCACCGGCACAGCGTGTCGCATACCTCCTTCCCTCCCATCTGCG
CGTCTTTGGATTGAATTTGTTCCCCGTTGCTTGGCTCTTCGCCTTGTGTTTGCAGCATGT
AGCATGTCCGTTCATTCACGTCCAACGTCCACCTGCTTTCCTCTACACACAGCCACGAGA
AAGAGGTACCTCGAGCCCTCTTCCCCTGCAGACCTGACGGTCCTCAACCGTAGCATCATG
TGTCTGCTCCACAGCAGGGATGCTGGCTTGACAGGGGACAGGGAGGGATGGAGTTAGGAA
AGGGCATCTTCGCCATGGCTGTGCGTCTCAACAGGAGTGAGCTAGAAATGCTCTTTCTGG
CAGTTGGGTGCGCTGGATGGGTCATTTTTGCAAGAGGGTGCATAATTACTGAGCGCGCAG
GCATCAGAGATGGTGCTGCAGACAGGAGGAGCGGGAGAGGTGTCGAAGCCGCTTCTCCCC
GTTCTGTCTCCTTGCATCCCACCGTTGACTACCGAGGTCGGGATCCTCCTAAGCATCCTG
TTGCAGAGGGCCTGGCTCTTCCTGACCACGTTGTTCCCGTCGGTGTTTCCTAGCCAGTTC
CTCTGGTTCAGCAGCCGTGTACTAACAGACGTCTTGGTCAAGGTTGCAGGAAAAGGACCA
AAGATAGACTGCGAAGGTCGTTTTCCATCTAGCCTGCGGGTCAAGTTCCCTCCAGTCGGT
CTTAGCCACGGTGAAATTCAGGCGATTTGTTGTTGTCGTCGTTGTCATTTCTTTTCTCCT
TTTCCATCTGTGTGGTATATTTTTAAACAGAAGTGTATTTTTAAAATAAAAGTCCTTTAT
AAGATGATACCTTCATTACACTCCTGCAATATAGCCATTATATTACTGTATAGTCCCAGT
TTATCTGTACTTTATGTAATAAAACAGACAAGGTGGCTGCTGCAGAATGCTGGGTGGCAT
AGGGGACAAAGACAGCTGTACCCTGGAACTTTGCCTTTGAATTCCAACTGTGGCCCTTTT
CCATGTGCCTTCACTTTAGCTGTTCGCCTTAATCTCTACAGTCTTGCTCTCCGGGGTGGT
AAATAAAATGCAACACTTGGCATTTTTTATGTTAAAAAAACAGTATTTTATTTATAATAA
AATCTGAATATTTGTAACCCCGCA
|
|
1-750, gnl|bosTau2|chr16 (45025383-45026157) |
|
1-750, gnl|Hg17|chr1 (179844920-179845694) |
|
1-750, gnl|Mm7|chr1 (153181258-153180623) |
| |
|
784-1400, gnl|bosTau2|chr16 (45026216-45026819) |
|
784-1400, gnl|canFam2|chr7 (19488315-19487842) |
|
784-1400, gnl|dasNov1|scaffold_204501 (3559-4047) |
|
784-1400, gnl|echTel1|scaffold_311727 (54997-54563) |
|
784-1400, gnl|Hg17|chr1 (179845764-179846380) |
|
784-1400, gnl|hg17|chr4 (6528692-6529172) |
|
784-1400, gnl|mm7|chr1 (153179996-153180455) |
|
784-1400, gnl|Mm7|chr1 (153180578-153179996) |
|
784-1400, gnl|monDom2|scaffold_16 (37005381-37004926) |
|
784-1400, gnl|panTro1|chr3 (6592442-6592922) |
|
784-1400, gnl|rheMac2|chr5 (2393465-2392988) |
|
784-1400, gnl|rn3|chr13 (68255537-68255981) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-750, gnl|bosTau2|chr16 (45025383-45026157) |
|
1-750, gnl|Hg17|chr1 (179844920-179845694) |
|
1-750, gnl|Mm7|chr1 (153181258-153180623) |
| |
|
784-1400, gnl|bosTau2|chr16 (45026216-45026819) |
|
784-1400, gnl|canFam2|chr7 (19488315-19487842) |
|
784-1400, gnl|dasNov1|scaffold_204501 (3559-4047) |
|
784-1400, gnl|echTel1|scaffold_311727 (54997-54563) |
|
784-1400, gnl|Hg17|chr1 (179845764-179846380) |
|
784-1400, gnl|hg17|chr4 (6528692-6529172) |
|
784-1400, gnl|mm7|chr1 (153179996-153180455) |
|
784-1400, gnl|Mm7|chr1 (153180578-153179996) |
|
784-1400, gnl|monDom2|scaffold_16 (37005381-37004926) |
|
784-1400, gnl|panTro1|chr3 (6592442-6592922) |
|
784-1400, gnl|rheMac2|chr5 (2393465-2392988) |
|
784-1400, gnl|rn3|chr13 (68255537-68255981) |
|
hea (0.613497) |
|
che (0.545256) |
|
ski (0.440205) |
|
hyp (0.42851) |
|
nms (0.427716) |
|
amn (0.417711) |
|
aor (0.390549) |
|
ldo (0.38801) |
|
spc (0.340097) |
|
fat (0.294855) |
|
nca (0.273748) |
|
ova (0.258264) |
|
mgp (0.230681) |
|
mas (0.210305) |
|
eje (0.197668) |
|
nep (0.183925) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
fhi (0.169578) |
|
eli (0.151814) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
sug (0.127291) |
|
cly (0.120642) |
|
eru (0.120048) |
|
clu (0.119646) |
|
jca (0.11396) |
|
jej (0.0989218) |
|
hea (0.613497) |
|
che (0.545256) |
|
ski (0.440205) |
|
hyp (0.42851) |
|
nms (0.427716) |
|
amn (0.417711) |
|
aor (0.390549) |
|
ldo (0.38801) |
|
spc (0.340097) |
|
fat (0.294855) |
|
nca (0.273748) |
|
ova (0.258264) |
|
mgp (0.230681) |
|
mas (0.210305) |
|
eje (0.197668) |
|
nep (0.183925) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
fhi (0.169578) |
|
eli (0.151814) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
sug (0.127291) |
|
cly (0.120642) |
|
eru (0.120048) |
|
clu (0.119646) |
|
jca (0.11396) |
|
jej (0.0989218) |
