Non-Coding RNA Search

Ss1.1-Pig4-TMW8044B07.3

Sequence:


               
               GAAGGAAACATTTTCTTGAGAGGGGAAACGTCTCCCAGATCGCTCCTCTGGCTCTGAGGC
TGAAGCTGGTGTGACCCACGTCCCCTTAACGGGCCTGAGCCATAGCCTGCCTCCTCTGCC
AGTGGACCCCTGTACATACATCTTTTTTTCTGCTAACTTCTCAACCCCCTCCTCTCCAAC
CTCCGAGACAAAAGAAAAAATATATTAAAAAAAAAAAAAACTGCATAAGCTTAACTCGCT
GATGAGTTGTTTTATTTTTAAACTTCTTGGGTCCAGTCAATTGTACGTTGCCACAAAAGC
CCTCGCTATGGGAAGGAATAAAACCTACAAACCAAGGCTGTAGCTTCGCAATTATTTTTG
GAAAAGTTCTTGGATCCCACAGCCCTAGGATGGGGAGCGGGAGTGGGGTGGGACCTTGGC
TCCTCTTGGCTTCCAGGGACTTATCTGGCAGGTGGCGAAGGAAGGCAGGAGCAGGGGTTG
GGACAGAGCTGGGACGGAAGGAGAGGCCATGACCCTGCTGGGGTCTTGGGAGATGCCTCG
GTTCTGCTCTGCTCTGCTGTGGCTGTCTGGATCCTCCCCAAGGTACAGCTGTACATAACT
GTGTCTGAGCTTAGATTCTGTATGCGGCGGTGGCAGGGTGCGGCGGCTGGCGAGGCCCGG
CTGGGAAGAGGATTGTGCTGTAGTCCAAGTGCAATACGGGCAGGCGATCGCTGCGGGGGC
ACCACAGCCAGAAGTAACTTATTTTGTGCTAGTATCCGCATAAGAAAAAGAATCGGCAGT
ATTTTCTGGTTTTATGTTTCATTTGGCTTGTTTTATTTTGGATTAGTGAACTAAGTTATT
GTTAATTATGTACAACATTTATATATTGTCTGTAAAAATTGTATGCTATCTTCCTATTCC
TTTAAAGTGAATACTGTTAAGAATAATAAAATACTTTTTGTGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGAAACATTTTCTTGAGAGGGGAAACGTCTCCCAGATCGCTCCTCTGGCTCTGAGGC
TGAAGCTGGTGTGACCCACGTCCCCTTAACGGGCCTGAGCCATAGCCTGCCTCCTCTGCC
AGTGGACCCCTGTACATACATCTTTTTTTCTGCTAACTTCTCAACCCCCTCCTCTCCAAC
CTCCGAGACAAAAGAAAAAATATATTAAAAAAAAAAAAAACTGCATAAGCTTAACTCGCT
GATGAGTTGTTTTATTTTTAAACTTCTTGGGTCCAGTCAATTGTACGTTGCCACAAAAGC
CCTCGCTATGGGAAGGAATAAAACCTACAAACCAAGGCTGTAGCTTCGCAATTATTTTTG
GAAAAGTTCTTGGATCCCACAGCCCTAGGATGGGGAGCGGGAGTGGGGTGGGACCTTGGC
TCCTCTTGGCTTCCAGGGACTTATCTGGCAGGTGGCGAAGGAAGGCAGGAGCAGGGGTTG
GGACAGAGCTGGGACGGAAGGAGAGGCCATGACCCTGCTGGGGTCTTGGGAGATGCCTCG
GTTCTGCTCTGCTCTGCTGTGGCTGTCTGGATCCTCCCCAAGGTACAGCTGTACATAACT
GTGTCTGAGCTTAGATTCTGTATGCGGCGGTGGCAGGGTGCGGCGGCTGGCGAGGCCCGG
CTGGGAAGAGGATTGTGCTGTAGTCCAAGTGCAATACGGGCAGGCGATCGCTGCGGGGGC
ACCACAGCCAGAAGTAACTTATTTTGTGCTAGTATCCGCATAAGAAAAAGAATCGGCAGT
ATTTTCTGGTTTTATGTTTCATTTGGCTTGTTTTATTTTGGATTAGTGAACTAAGTTATT
GTTAATTATGTACAACATTTATATATTGTCTGTAAAAATTGTATGCTATCTTCCTATTCC
TTTAAAGTGAATACTGTTAAGAATAATAAAATACTTTTTGTGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-345, gnl|bosTau2|chr22 (46086202-46086546)
               

               
               1-345, gnl|Hg17|chr3 (129681906-129681559)
               

               
               1-345, gnl|Mm7|chr6 (88281254-88281604)
               


               
               529-944, gnl|bosTau2|chr22 (46086624-46087015)
               

               
               529-944, gnl|Hg17|chr3 (129681434-129680968)
               

               
               529-944, gnl|Mm7|chr6 (88281691-88282125)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-345, gnl|bosTau2|chr22 (46086202-46086546)
               

               
               1-345, gnl|Hg17|chr3 (129681906-129681559)
               

               
               1-345, gnl|Mm7|chr6 (88281254-88281604)
               


               
               529-944, gnl|bosTau2|chr22 (46086624-46087015)
               

               
               529-944, gnl|Hg17|chr3 (129681434-129680968)
               

               
               529-944, gnl|Mm7|chr6 (88281691-88282125)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               cmu (0.55918)
               

               
               cut (0.509771)
               

               
               cki (0.330469)
               

               
               cje (0.165235)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               cut (0.509771)
               

               
               cki (0.330469)
               

               
               cje (0.165235)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)

	1-345, gnl\|bosTau2\|chr22 (46086202-46086546)
	1-345, gnl\|Hg17\|chr3 (129681906-129681559)
	1-345, gnl\|Mm7\|chr6 (88281254-88281604)

	529-944, gnl\|bosTau2\|chr22 (46086624-46087015)
	529-944, gnl\|Hg17\|chr3 (129681434-129680968)
	529-944, gnl\|Mm7\|chr6 (88281691-88282125)

	cmu (0.55918)
	cut (0.509771)
	cki (0.330469)
	cje (0.165235)
	hlv (0.139256)
	pla (0.133672)