Non-Coding RNA Search

Ss1.1-Pig4-TMW8044C07.5

Sequence:


               
               GTGAGCTCTGCTGTTACAGATACCATGTCATAGCCATTAAAATGAAACAACCTTGCCAGT
GGCAAAGCATTTCTATAACACTGGTTGAGAAAGTTCAGATGATTGCTGTAATCCTAGGAT
CCCTGTTCTTAATAGCAAGTGTGACCTGGCTCCTCTGGTCAGCCTTCAGCCCCTATGCAA
TGTGGCAGAGGAAGGACATCCTTTTTCAGATCTGCTATGGAATGTATGGTTTTATGGATC
TAGTGTGCATAGGTCTCATCGTCCATGAAGGAGCTGCAGTTTACAGAGTGTTTAAGCGCT
GGCGAGCTGTTAATTTACACTGGGATGTATTAAATTACGACAAAGCCTCGGACATCGAAG
AAAGTAGCCGGGGAGAGTCTTCCACAAGCAGGACTTTATGGTTGCCATTGACGGCGCTGC
GGAACAGGAACTTGGTCCACCCAACACAGTTGACCTCCCCAAGGTTTCAGTGTGGCTACG
TGTTACTACATCTGTTCAATCGAATGAGGCCCCATGAAGATTTGTCAGAAGACAACAGCT
CAGGGGAGGTTGTGATGAGAGTAACTTCAGTGTGACAAAGTTAAGAAGGTGCAGTGTGGA
CCACCCTGTGCATCTTGGAATGTAATTGCAATCAATGAAAGGCAAAACCATAGCACTTCT
AAAAACACACATCTATGAACTTTTTAAAATTTATGCTTTTTATATGAACATTTGAATTGC
AAATACATTTTTCTGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGCTCTGCTGTTACAGATACCATGTCATAGCCATTAAAATGAAACAACCTTGCCAGT
GGCAAAGCATTTCTATAACACTGGTTGAGAAAGTTCAGATGATTGCTGTAATCCTAGGAT
CCCTGTTCTTAATAGCAAGTGTGACCTGGCTCCTCTGGTCAGCCTTCAGCCCCTATGCAA
TGTGGCAGAGGAAGGACATCCTTTTTCAGATCTGCTATGGAATGTATGGTTTTATGGATC
TAGTGTGCATAGGTCTCATCGTCCATGAAGGAGCTGCAGTTTACAGAGTGTTTAAGCGCT
GGCGAGCTGTTAATTTACACTGGGATGTATTAAATTACGACAAAGCCTCGGACATCGAAG
AAAGTAGCCGGGGAGAGTCTTCCACAAGCAGGACTTTATGGTTGCCATTGACGGCGCTGC
GGAACAGGAACTTGGTCCACCCAACACAGTTGACCTCCCCAAGGTTTCAGTGTGGCTACG
TGTTACTACATCTGTTCAATCGAATGAGGCCCCATGAAGATTTGTCAGAAGACAACAGCT
CAGGGGAGGTTGTGATGAGAGTAACTTCAGTGTGACAAAGTTAAGAAGGTGCAGTGTGGA
CCACCCTGTGCATCTTGGAATGTAATTGCAATCAATGAAAGGCAAAACCATAGCACTTCT
AAAAACACACATCTATGAACTTTTTAAAATTTATGCTTTTTATATGAACATTTGAATTGC
AAATACATTTTTCTGAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61810473|ref|XP_618115.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61810473|ref|XP_618115.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               251-741, gnl|bosTau2|chr20 (33093922-33094408)
               

               
               251-741, gnl|Hg17|chr5 (16120904-16120417)
               

               
               251-741, gnl|Mm7|chr15 (26512143-26512634)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               251-741, gnl|bosTau2|chr20 (33093922-33094408)
               

               
               251-741, gnl|Hg17|chr5 (16120904-16120417)
               

               
               251-741, gnl|Mm7|chr15 (26512143-26512634)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.87822)
               

               
               tes (0.623441)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               tes (0.623441)

	251-741, gnl\|bosTau2\|chr20 (33093922-33094408)
	251-741, gnl\|Hg17\|chr5 (16120904-16120417)
	251-741, gnl\|Mm7\|chr15 (26512143-26512634)