Non-Coding RNA Search

Ss1.1-Pig4-TMW8044C08.5

Sequence:


               
               TTTATAGTTTATGTGACGTAGCAATCTTGGTTGCTGGAATGGCTGTCAGTATCAGTAGCG
ATATTTATCTTCTCCCGCCCCTCGCTCGGCCGATGGCCCTGCACCCTTTACCTTCTCAAT
TCTTTGATCAGAAACAGGGTAAATGAACAAATTTTCTAGCCAAGTTCTTCAATGTGAATT
TGTTCGTACATTATGGCTCCCGAGGGGAAGCGATTACTTTTTTTTTTTTTGTAATTTTTA
GGGTTTTTTTTTTAAATTGCACTTCTTGTAAAGAGCGAGAAAAAAATCAAAGGCGCTTTG
AAACAGGGACTCCCTGTACAAGGATGATTAAGTGTACGTCTTTCCGTGTGTGTATGCTGG
TGAACAGTCAGATTTATTTATATTTTTTTTGCAAGCATTGAATAATCTAAGTTTTAAATA
TTATTTATCCCCATCCGTTCGTATTTATATTAAAGAAATTCTGTACCCTGGTTGTTCAGA
AGGTTTCTTGGGCCTTTTGTTCAATGGTCTATTGGCGTACATAGGAAAAAATTTATTTGA
AAGGGAAATATAATTCCTTTATAAAAACGGTAATGATGCAATAATACCAGAGAGGATCCA
GCTTTTCAGAACAGTGATTTAGGTTTGCAACATCCTGCAAAACTGAAAAAAAAAATCTGT
GACAGTGAAAAATGCTAGATTTGTTTTGAGAGTTCTACATTCCTTGCTGCTCACATTCTG
AGAAACAAAACAAAAAAAATAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATAGTTTATGTGACGTAGCAATCTTGGTTGCTGGAATGGCTGTCAGTATCAGTAGCG
ATATTTATCTTCTCCCGCCCCTCGCTCGGCCGATGGCCCTGCACCCTTTACCTTCTCAAT
TCTTTGATCAGAAACAGGGTAAATGAACAAATTTTCTAGCCAAGTTCTTCAATGTGAATT
TGTTCGTACATTATGGCTCCCGAGGGGAAGCGATTACTTTTTTTTTTTTTGTAATTTTTA
GGGTTTTTTTTTTAAATTGCACTTCTTGTAAAGAGCGAGAAAAAAATCAAAGGCGCTTTG
AAACAGGGACTCCCTGTACAAGGATGATTAAGTGTACGTCTTTCCGTGTGTGTATGCTGG
TGAACAGTCAGATTTATTTATATTTTTTTTGCAAGCATTGAATAATCTAAGTTTTAAATA
TTATTTATCCCCATCCGTTCGTATTTATATTAAAGAAATTCTGTACCCTGGTTGTTCAGA
AGGTTTCTTGGGCCTTTTGTTCAATGGTCTATTGGCGTACATAGGAAAAAATTTATTTGA
AAGGGAAATATAATTCCTTTATAAAAACGGTAATGATGCAATAATACCAGAGAGGATCCA
GCTTTTCAGAACAGTGATTTAGGTTTGCAACATCCTGCAAAACTGAAAAAAAAAATCTGT
GACAGTGAAAAATGCTAGATTTGTTTTGAGAGTTCTACATTCCTTGCTGCTCACATTCTG
AGAAACAAAACAAAAAAAATAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-239, - strand, RNAz p=0.566086

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.566086

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chr4 (37145881-37146602)
               

               
               1-744, gnl|Hg17|chr7 (26920602-26919885)
               

               
               1-744, gnl|Mm7|chr6 (52133048-52132332)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr4 (37145881-37146602)
               

               
               1-744, gnl|Hg17|chr7 (26920602-26919885)
               

               
               1-744, gnl|Mm7|chr6 (52133048-52132332)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               gul (0.355177)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               med (0.116252)

	1-744, gnl\|bosTau2\|chr4 (37145881-37146602)
	1-744, gnl\|Hg17\|chr7 (26920602-26919885)
	1-744, gnl\|Mm7\|chr6 (52133048-52132332)