Non-Coding RNA Search

Ss1.1-Pig4-TMW8044C11.3

Sequence:


               
               TGTTTTCACAGATCCAAACATCACAAGTAGGACAATATGATCGGAGATTGATGTATGATT
GCTACCCAACAATCAGCAAAAGGGATAATCACGACTTGTGAAACTTCAGAGGTACCCTGA
AAGTCATTTCCTAAAGTTAGTGCATGTGAGTCTTCTTCCTTGAATTGTGCAGAATCAATT
GGATTGGGGAATAGCATATTTTGGGGAATAGCAAGTGAAGTGGTATGATGATGGCAGAGA
AAGTGATCTTGAAATGTAACAAGAAACAAGTTTTCTTTCTCCACTTTACTGCCCTGCTAT
TTGGGTCAAGAGGTTGCTATGATAGATCTCCTTGTGCCAGGCCAAGATTGGCCAACTGAA
ATAGAGTTCTCAAAGAGCTGAAATATATAAATTGTGTATGAGTGCCTATTTTTTTCCTCC
TTCTTTCCTTTACTATCTTAATACCCTTTCTACTTCTGAAATAATTCATCTGTTTTGCTC
TATGACCAGCTTTAATTTCAGTTTAAGAATAACAGCAACCCTAGAAAGTGATAGAAAAGA
GCATTGAGATACATTTTTTTAATAAAGACACTAAAAGCAATCTAGCATAGGGTTGAACTG
AATTTCCATCAAAGAAAGTTATTGTTTTATAGGCTAATTATGCTAAAACTATTTGATTCT
AAAAACCATGTCTTCAGTTTCAAAAGCTTCACTTTTGAAACTCCTTAAAAGGGATACTCC
TTAAAAAGGCATATTAACATAGATGGGAAAATACAAAATATTTCTGAAAGAATTATTCAG
TATTATTCAATATTTAATTTTATGTTTGTTATTGTACCACAAGGATAGCATCATTCTTGG
ATTAAAATGTTGGATTTTTTTTTTGTTAACATACTTAAAACTGTAACCAGTGGTAACACT
CTTAGTATTTTTTATTATAGATTATATTTTATTTCAATAAAATTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTTCACAGATCCAAACATCACAAGTAGGACAATATGATCGGAGATTGATGTATGATT
GCTACCCAACAATCAGCAAAAGGGATAATCACGACTTGTGAAACTTCAGAGGTACCCTGA
AAGTCATTTCCTAAAGTTAGTGCATGTGAGTCTTCTTCCTTGAATTGTGCAGAATCAATT
GGATTGGGGAATAGCATATTTTGGGGAATAGCAAGTGAAGTGGTATGATGATGGCAGAGA
AAGTGATCTTGAAATGTAACAAGAAACAAGTTTTCTTTCTCCACTTTACTGCCCTGCTAT
TTGGGTCAAGAGGTTGCTATGATAGATCTCCTTGTGCCAGGCCAAGATTGGCCAACTGAA
ATAGAGTTCTCAAAGAGCTGAAATATATAAATTGTGTATGAGTGCCTATTTTTTTCCTCC
TTCTTTCCTTTACTATCTTAATACCCTTTCTACTTCTGAAATAATTCATCTGTTTTGCTC
TATGACCAGCTTTAATTTCAGTTTAAGAATAACAGCAACCCTAGAAAGTGATAGAAAAGA
GCATTGAGATACATTTTTTTAATAAAGACACTAAAAGCAATCTAGCATAGGGTTGAACTG
AATTTCCATCAAAGAAAGTTATTGTTTTATAGGCTAATTATGCTAAAACTATTTGATTCT
AAAAACCATGTCTTCAGTTTCAAAAGCTTCACTTTTGAAACTCCTTAAAAGGGATACTCC
TTAAAAAGGCATATTAACATAGATGGGAAAATACAAAATATTTCTGAAAGAATTATTCAG
TATTATTCAATATTTAATTTTATGTTTGTTATTGTACCACAAGGATAGCATCATTCTTGG
ATTAAAATGTTGGATTTTTTTTTTGTTAACATACTTAAAACTGTAACCAGTGGTAACACT
CTTAGTATTTTTTATTATAGATTATATTTTATTTCAATAAAATTTGAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               432-551, - strand, RNAz p=0.885419

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               432-551, - strand, RNAz p=0.885419

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-948, gnl|bosTau2|chr10 (36450344-36449419)
               

               
               3-948, gnl|Hg17|chr15 (56940454-56941379)
               

               
               3-948, gnl|Mm7|chr9 (70631765-70630976)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-948, gnl|bosTau2|chr10 (36450344-36449419)
               

               
               3-948, gnl|Hg17|chr15 (56940454-56941379)
               

               
               3-948, gnl|Mm7|chr9 (70631765-70630976)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)

	3-948, gnl\|bosTau2\|chr10 (36450344-36449419)
	3-948, gnl\|Hg17\|chr15 (56940454-56941379)
	3-948, gnl\|Mm7\|chr9 (70631765-70630976)

	aor (0.195274)
	nlu (0.191681)
	sto (0.179824)
	gul (0.177588)
	rec (0.17307)
	mga (0.160205)
	fco (0.157208)
	tra (0.123092)
	clu (0.119646)
	cbl (0.114797)