Non-Coding RNA Search

Ss1.1-Pig4-TMW8044C15.3

Sequence:


               
               AGGCACTGGTATGGACTAAACCAGTTAAAGATCCCAGGTCAAAGCACCGGACTCCTTCTA
CCAGCAAAACCACCAGTGTCCAGCAGCCTCGGGGCTCTAATCAGGCCCTAGGACAGGCAA
GGTCTTCAGCAGCCACATACAGGAAGCTCCCCTCAGGTGCCGGAGGAACACCCCAGCCCA
CAAAGCCACCATCTCTTCCTCTGGAGCCAGAGCCCACTGTGGAAGCACAGCCAACTGGAG
CATCAGCACAAATAAGAGAAAAACAGGTGTAGGATGACCCCAGAGTTGGGAGTTTCTTTA
GCGAGGATGTACCAGGTTAGGTAGGGAAGGTCAGTGACACAGGCAGCGAGGAGGCTAGCA
TGTTCCCCGGGGAACCACGAATTAGAACCCAGAACGTGTTATGACGACCATGAGGAGCCT
GCACAGCCCCCACTGCTCCGTCAGCCAGGAAGGGGAGAGAAGAAAGCCCAGACAGGTTTT
TTAAGAATTGAGAACAAGGCTTATGGCTCTGTGTATGTAGTTCCCAGAGCGAGCCCGGGC
ATGGGATATTGTTTGCTTTGAAAAGGATTTAATCTCCTGGCTGACTGATCCCTTCCTTAG
TAGGAGGAAAGTGTGAGACAGACCTCTGCTCAGTAGTCCTGTCATGACGAAGCCTTGGCT
TAGCTGAGGTGACCCTAGGGCTGTGGGGTATACCAGCCACCCAGGCAAATACAAATCTTG
GATTAATAATTCGGCTCCAATAGTCTAAATTTAAAAGAAAAAAATGATGAAAAAAAGCTC
TTTTGATTAAAGTCCAGCCTATTGAGTGTCCCAGCTGCATTCACTCAAGGAATCCAAAAC
AATATCCCTATGTCTCGTTCTTGAGCAGGTTCACAGTGCAGAGCCAGATCATGTCAGTAT
GATGAGAAGTAGAGACCAAGGGCTGACTGGGTGTCAGCACCAAAGATTAAAAAAAAACCC
AAAAACAAAACAGAACAAAAAAAACAAAACTTCTTAACTGAGTTATTTTTATTTAAGACA
ATCTGTGATACCACTGACCAGATGCTACCAATACATTATATATCCTTTTCAGAATAAAGA
TCATGTGTCATCCCCTTTGGGGAAAGTTGTTATTCAGGTATAAACATAAGGGATCACAAT
AAAAGCTTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCACTGGTATGGACTAAACCAGTTAAAGATCCCAGGTCAAAGCACCGGACTCCTTCTA
CCAGCAAAACCACCAGTGTCCAGCAGCCTCGGGGCTCTAATCAGGCCCTAGGACAGGCAA
GGTCTTCAGCAGCCACATACAGGAAGCTCCCCTCAGGTGCCGGAGGAACACCCCAGCCCA
CAAAGCCACCATCTCTTCCTCTGGAGCCAGAGCCCACTGTGGAAGCACAGCCAACTGGAG
CATCAGCACAAATAAGAGAAAAACAGGTGTAGGATGACCCCAGAGTTGGGAGTTTCTTTA
GCGAGGATGTACCAGGTTAGGTAGGGAAGGTCAGTGACACAGGCAGCGAGGAGGCTAGCA
TGTTCCCCGGGGAACCACGAATTAGAACCCAGAACGTGTTATGACGACCATGAGGAGCCT
GCACAGCCCCCACTGCTCCGTCAGCCAGGAAGGGGAGAGAAGAAAGCCCAGACAGGTTTT
TTAAGAATTGAGAACAAGGCTTATGGCTCTGTGTATGTAGTTCCCAGAGCGAGCCCGGGC
ATGGGATATTGTTTGCTTTGAAAAGGATTTAATCTCCTGGCTGACTGATCCCTTCCTTAG
TAGGAGGAAAGTGTGAGACAGACCTCTGCTCAGTAGTCCTGTCATGACGAAGCCTTGGCT
TAGCTGAGGTGACCCTAGGGCTGTGGGGTATACCAGCCACCCAGGCAAATACAAATCTTG
GATTAATAATTCGGCTCCAATAGTCTAAATTTAAAAGAAAAAAATGATGAAAAAAAGCTC
TTTTGATTAAAGTCCAGCCTATTGAGTGTCCCAGCTGCATTCACTCAAGGAATCCAAAAC
AATATCCCTATGTCTCGTTCTTGAGCAGGTTCACAGTGCAGAGCCAGATCATGTCAGTAT
GATGAGAAGTAGAGACCAAGGGCTGACTGGGTGTCAGCACCAAAGATTAAAAAAAAACCC
AAAAACAAAACAGAACAAAAAAAACAAAACTTCTTAACTGAGTTATTTTTATTTAAGACA
ATCTGTGATACCACTGACCAGATGCTACCAATACATTATATATCCTTTTCAGAATAAAGA
TCATGTGTCATCCCCTTTGGGGAAAGTTGTTATTCAGGTATAAACATAAGGGATCACAAT
AAAAGCTTTTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.83292

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.83292

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               11-138, - strand, RNAmicro p=0.995427

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               11-138, - strand, RNAmicro p=0.995427

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-159, gnl|bosTau2|chr10 (10996390-10996548)
               

               
               1-159, gnl|canFam2|chr30 (39106079-39106270)
               

               
               1-159, gnl|danRer3|chr25 (898175-897996)
               

               
               1-159, gnl|dasNov1|scaffold_18259 (28582-28391)
               

               
               1-159, gnl|echTel1|scaffold_316778 (39304-39113)
               

               
               1-159, gnl|fr1|chrUn (5094797-5094991)
               

               
               1-159, gnl|galGal2|chr10 (960396-960196)
               

               
               1-159, gnl|hg17|chr15 (70816166-70816357)
               

               
               1-159, gnl|Hg17|chr15 (70816202-70816360)
               

               
               1-159, gnl|loxAfr1|scaffold_20201 (3666-3475)
               

               
               1-159, gnl|mm7|chr9 (59350508-59350317)
               

               
               1-159, gnl|Mm7|chr9 (59350470-59350312)
               

               
               1-159, gnl|monDom2|scaffold_41 (6520658-6520479)
               

               
               1-159, gnl|oryCun1|scaffold_160879 (22669-22478)
               

               
               1-159, gnl|panTro1|chr16_random (19925863-19926054)
               

               
               1-159, gnl|rheMac2|chr7 (51414960-51415151)
               

               
               1-159, gnl|rn3|chr8 (63174131-63173940)
               

               
               1-159, gnl|tetNig1|chr5 (10918305-10918145)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-159, gnl|bosTau2|chr10 (10996390-10996548)
               

               
               1-159, gnl|canFam2|chr30 (39106079-39106270)
               

               
               1-159, gnl|danRer3|chr25 (898175-897996)
               

               
               1-159, gnl|dasNov1|scaffold_18259 (28582-28391)
               

               
               1-159, gnl|echTel1|scaffold_316778 (39304-39113)
               

               
               1-159, gnl|fr1|chrUn (5094797-5094991)
               

               
               1-159, gnl|galGal2|chr10 (960396-960196)
               

               
               1-159, gnl|hg17|chr15 (70816166-70816357)
               

               
               1-159, gnl|Hg17|chr15 (70816202-70816360)
               

               
               1-159, gnl|loxAfr1|scaffold_20201 (3666-3475)
               

               
               1-159, gnl|mm7|chr9 (59350508-59350317)
               

               
               1-159, gnl|Mm7|chr9 (59350470-59350312)
               

               
               1-159, gnl|monDom2|scaffold_41 (6520658-6520479)
               

               
               1-159, gnl|oryCun1|scaffold_160879 (22669-22478)
               

               
               1-159, gnl|panTro1|chr16_random (19925863-19926054)
               

               
               1-159, gnl|rheMac2|chr7 (51414960-51415151)
               

               
               1-159, gnl|rn3|chr8 (63174131-63173940)
               

               
               1-159, gnl|tetNig1|chr5 (10918305-10918145)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               pgl (0.236967)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)

	1-159, gnl\|bosTau2\|chr10 (10996390-10996548)
	1-159, gnl\|canFam2\|chr30 (39106079-39106270)
	1-159, gnl\|danRer3\|chr25 (898175-897996)
	1-159, gnl\|dasNov1\|scaffold_18259 (28582-28391)
	1-159, gnl\|echTel1\|scaffold_316778 (39304-39113)
	1-159, gnl\|fr1\|chrUn (5094797-5094991)
	1-159, gnl\|galGal2\|chr10 (960396-960196)
	1-159, gnl\|hg17\|chr15 (70816166-70816357)
	1-159, gnl\|Hg17\|chr15 (70816202-70816360)
	1-159, gnl\|loxAfr1\|scaffold_20201 (3666-3475)
	1-159, gnl\|mm7\|chr9 (59350508-59350317)
	1-159, gnl\|Mm7\|chr9 (59350470-59350312)
	1-159, gnl\|monDom2\|scaffold_41 (6520658-6520479)
	1-159, gnl\|oryCun1\|scaffold_160879 (22669-22478)
	1-159, gnl\|panTro1\|chr16_random (19925863-19926054)
	1-159, gnl\|rheMac2\|chr7 (51414960-51415151)
	1-159, gnl\|rn3\|chr8 (63174131-63173940)
	1-159, gnl\|tetNig1\|chr5 (10918305-10918145)

	pgl (0.236967)
	sag (0.182715)
	gul (0.177588)
	csp (0.161186)
	lun (0.150489)
	ski (0.146735)
	kid (0.129735)
	ret (0.128733)
	ecc (0.115035)