Ss1.1-Pig4-TMW8044C18.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCCTTATCCACAGCTTCTGAGATCTAGGAGGACTCTCCTTTCCCAAACTACTTATCAC CATGGCCCATCAATTTCCAGCTCTCACCCCAGAACAGAGGAAGGAGCTCTCAGAAATTGC CCAGCGCATTGTTGCCAATGGGAAGGGGATTCTGGCTGCAGATGAGTCTGTGGGCACCAT GGGGAACCGCCTGCAAAGGATCAAGGTGGAGAACACAGAAGAGAACCGCCGGCAGTTCCG AGAAATCCTCTTCACTGTGGACAACTCCATCAACCAGAGCATCGGGGGTGTGATCCTTTT CCATGAGACTCTCTACCAGAAGGACAGCCAGGGAAAGCTGTTCAGAGACATCCTCAAGGA AAAGGGGATCGTGCTGGGAATCAAGTTAGACCAAGGAGGAGCTCCCCTTGCAGGAACAAA CAAAGAAACTACCATTCAAGGGCTTGATGGCCTTTCTGAACGCTGTGCTCAGTATAAGAA AGATGGTGTTGACTTTGGGAAGTGGCGTGCGGTGCTGAGAATTGACAAGCAGTGTCCATC CCACCTTGCTATCCAGGAAAACGCCAATGCCCTGGCCCGCTATGCCAGCATCTGTCAGCA GAATGGGCTGGTACCCATTGTTGAACCAGAGGTAATTCCTGATGGAGACCATGACATGGA ACACTGCCAGTATGTTACTGAGAAGGTCCTGGCTGCTGTCTACAAGGCTCTGAATGACCA TCATGTTTATTTGGAGGGCACTCTGTTGAAGCCCAACATGGTGACTGCTGGACATGCCTG CACCAAGAAGTATACTCCAGAGCAAGTGGCAATGGCCACCGTCACAGCCCTGTACCGTAC TGTTCCTGCAGCTGTTCCTGGCATCTGCTTTTTATCCGGTGGCATGAGTGAAGAAGATGC TACTCTCAACCTCAATGCTATCAACCTTTGTCCTCTACCAAAGCCCTGGAAACTAAGTTT CTCTTATGGACGGGCCCTGCAGGCCAGTGCACTGGCTGCCTGGGGTGGCAAGGCTGCAAA CAAGAAGGCAACCCAGGAGGCTTTTATGAAGCGGGCTCTGGCTAACTGCCAGGCAGCCAA AGGACAGTATGTTCACACGGGCTCTTCTGGTGCTGCTTCCACTCAGTCGCTCTTCACAGC CTGCTATACCTACTAGAACCTGAGGCCAACCAGCCTCTCTCTCAGGCTTGTAGGTATCTT GGTAGGAGGGCTGAAAGGGAACAACAGCCTTTCAGCTGAACCTGGATAGTAGCTAAAATT AGACTGGAACTACTGGAAACACAATGCATGTTAAGTTCTTAGACACAAAGAAAAAAAAAT CAGTTATTGAAACATAGGTCTGGATATCAAGAATCTGATGAAATTTCACACAGTGGTTTC CCTACAACACTTCCAACTCTCCATGCCCCAGAGCATCCATCTAAGAACAGACTTTAAAAC AAAATAAGCTCTCCATCCAAATAACCAAATGAAATACCTCTTAAGCTGAGTGCAGAGAAG TGTGTCTCATTAAGCAATTTTAGCAGTAGGTTATGAAGGAGACAGCTGCAACCAAAAAAG AAATAAAATGTTCTACAAGCATTCAAAAAAAAAAAAGTTTTACTTTCTGCTCTTGCTTTA AAAATGCTTAATATATTCCATTACCTTTGACTCTACTAGGCATACCTGACGTTAGTGGTC TATCCTCAACTTTGGTTACTCCTTGGAATAACCTGGCAAAATTTAAAAACACGGATGCTC ACACTCTAGCCAAGTCTTAGAACTACCAAGGTTGAGGTCTTTTAGAAATGAAAGCCATTC AAAATATGAAGCAAGCTACAATGTAAAATGATTTCAAACAACATGTGGAGTATAATAAAA AAATCACTGTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCCTTATCCACAGCTTCTGAGATCTAGGAGGACTCTCCTTTCCCAAACTACTTATCAC CATGGCCCATCAATTTCCAGCTCTCACCCCAGAACAGAGGAAGGAGCTCTCAGAAATTGC CCAGCGCATTGTTGCCAATGGGAAGGGGATTCTGGCTGCAGATGAGTCTGTGGGCACCAT GGGGAACCGCCTGCAAAGGATCAAGGTGGAGAACACAGAAGAGAACCGCCGGCAGTTCCG AGAAATCCTCTTCACTGTGGACAACTCCATCAACCAGAGCATCGGGGGTGTGATCCTTTT CCATGAGACTCTCTACCAGAAGGACAGCCAGGGAAAGCTGTTCAGAGACATCCTCAAGGA AAAGGGGATCGTGCTGGGAATCAAGTTAGACCAAGGAGGAGCTCCCCTTGCAGGAACAAA CAAAGAAACTACCATTCAAGGGCTTGATGGCCTTTCTGAACGCTGTGCTCAGTATAAGAA AGATGGTGTTGACTTTGGGAAGTGGCGTGCGGTGCTGAGAATTGACAAGCAGTGTCCATC CCACCTTGCTATCCAGGAAAACGCCAATGCCCTGGCCCGCTATGCCAGCATCTGTCAGCA GAATGGGCTGGTACCCATTGTTGAACCAGAGGTAATTCCTGATGGAGACCATGACATGGA ACACTGCCAGTATGTTACTGAGAAGGTCCTGGCTGCTGTCTACAAGGCTCTGAATGACCA TCATGTTTATTTGGAGGGCACTCTGTTGAAGCCCAACATGGTGACTGCTGGACATGCCTG CACCAAGAAGTATACTCCAGAGCAAGTGGCAATGGCCACCGTCACAGCCCTGTACCGTAC TGTTCCTGCAGCTGTTCCTGGCATCTGCTTTTTATCCGGTGGCATGAGTGAAGAAGATGC TACTCTCAACCTCAATGCTATCAACCTTTGTCCTCTACCAAAGCCCTGGAAACTAAGTTT CTCTTATGGACGGGCCCTGCAGGCCAGTGCACTGGCTGCCTGGGGTGGCAAGGCTGCAAA CAAGAAGGCAACCCAGGAGGCTTTTATGAAGCGGGCTCTGGCTAACTGCCAGGCAGCCAA AGGACAGTATGTTCACACGGGCTCTTCTGGTGCTGCTTCCACTCAGTCGCTCTTCACAGC CTGCTATACCTACTAGAACCTGAGGCCAACCAGCCTCTCTCTCAGGCTTGTAGGTATCTT GGTAGGAGGGCTGAAAGGGAACAACAGCCTTTCAGCTGAACCTGGATAGTAGCTAAAATT AGACTGGAACTACTGGAAACACAATGCATGTTAAGTTCTTAGACACAAAGAAAAAAAAAT CAGTTATTGAAACATAGGTCTGGATATCAAGAATCTGATGAAATTTCACACAGTGGTTTC CCTACAACACTTCCAACTCTCCATGCCCCAGAGCATCCATCTAAGAACAGACTTTAAAAC AAAATAAGCTCTCCATCCAAATAACCAAATGAAATACCTCTTAAGCTGAGTGCAGAGAAG TGTGTCTCATTAAGCAATTTTAGCAGTAGGTTATGAAGGAGACAGCTGCAACCAAAAAAG AAATAAAATGTTCTACAAGCATTCAAAAAAAAAAAAGTTTTACTTTCTGCTCTTGCTTTA AAAATGCTTAATATATTCCATTACCTTTGACTCTACTAGGCATACCTGACGTTAGTGGTC TATCCTCAACTTTGGTTACTCCTTGGAATAACCTGGCAAAATTTAAAAACACGGATGCTC ACACTCTAGCCAAGTCTTAGAACTACCAAGGTTGAGGTCTTTTAGAAATGAAAGCCATTC AAAATATGAAGCAAGCTACAATGTAAAATGATTTCAAACAACATGTGGAGTATAATAAAA AAATCACTGTGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 173-385, gnl|bosTau2|chr19 (13574097-13573885) | |
| 173-385, gnl|canFam2|chr9 (46106604-46106836) | |
| 173-385, gnl|danRer3|chr15 (11970853-11971085) | |
| 173-385, gnl|dasNov1|scaffold_9430 (8699-8467) | |
| 173-385, gnl|echTel1|scaffold_317923 (5475-5707) | |
| 173-385, gnl|fr1|chrUn (15705750-15705982) | |
| 173-385, gnl|galGal2|chrZ (27567009-27567330) | |
| 173-385, gnl|hg17|chr17 (23926255-23926487) | |
| 173-385, gnl|Hg17|chr17 (23926480-23926268) | |
| 173-385, gnl|loxAfr1|scaffold_66389 (1030-1262) | |
| 173-385, gnl|mm7|chr11 (78406407-78406173) | |
| 173-385, gnl|Mm7|chr11 (78406178-78406390) | |
| 173-385, gnl|monDom2|scaffold_44 (14491039-14491271) | |
| 173-385, gnl|oryCun1|scaffold_190404 (77622-77390) | |
| 173-385, gnl|panTro1|chr19_random (12738864-12739096) | |
| 173-385, gnl|rheMac2|chr16 (23770665-23770897) | |
| 173-385, gnl|rn3|chr10 (64324355-64324589) | |
| 173-385, gnl|tetNig1|chr16 (3848079-3847847) | |
| 173-385, gnl|xenTro1|scaffold_50 (1449183-1448952) | |
| 439-608, gnl|bosTau2|chr19 (13573624-13573456) | |
| 439-608, gnl|canFam2|chr9 (46105974-46106113) | |
| 439-608, gnl|danRer3|chr15 (11965597-11965735) | |
| 439-608, gnl|dasNov1|scaffold_209379 (595-470) | |
| 439-608, gnl|echTel1|scaffold_317923 (5078-5217) | |
| 439-608, gnl|fr1|chrUn (15705349-15705487) | |
| 439-608, gnl|galGal2|chrZ (27566505-27566644) | |
| 439-608, gnl|hg17|chr17 (23925838-23925977) | |
| 439-608, gnl|Hg17|chr17 (23926003-23925838) | |
| 439-608, gnl|loxAfr1|scaffold_5483 (20454-20593) | |
| 439-608, gnl|mm7|chr11 (78406788-78406650) | |
| 439-608, gnl|Mm7|chr11 (78406622-78406789) | |
| 439-608, gnl|monDom2|scaffold_44 (14490512-14490658) | |
| 439-608, gnl|oryCun1|scaffold_190404 (78028-77889) | |
| 439-608, gnl|panTro1|chr19_random (12738447-12738586) | |
| 439-608, gnl|rheMac2|chr16 (23770248-23770387) | |
| 439-608, gnl|rn3|chr10 (64323971-64324109) | |
| 439-608, gnl|tetNig1|chr16 (3848438-3848300) | |
| 439-608, gnl|xenTro1|scaffold_50 (1450042-1449904) | |
| 684-861, gnl|bosTau2|chr19 (13573025-13572848) | |
| 684-861, gnl|Hg17|chr17 (23925392-23925211) | |
| 684-861, gnl|Mm7|chr11 (78407215-78407392) | |
| 868-1056, gnl|bosTau2|chr19 (13572709-13572521) | |
| 868-1056, gnl|canFam2|chr9 (46105045-46105265) | |
| 868-1056, gnl|danRer3|chr15 (11962771-11962987) | |
| 868-1056, gnl|dasNov1|scaffold_209379 (1077-884) | |
| 868-1056, gnl|echTel1|scaffold_317923 (4135-4360) | |
| 868-1056, gnl|fr1|chrUn (15704658-15704874) | |
| 868-1056, gnl|galGal2|chrZ (27564586-27564813) | |
| 868-1056, gnl|hg17|chr17 (23924879-23925104) | |
| 868-1056, gnl|Hg17|chr17 (23925072-23924884) | |
| 868-1056, gnl|loxAfr1|scaffold_5483 (19386-19610) | |
| 868-1056, gnl|mm7|chr11 (78407712-78407488) | |
| 868-1056, gnl|Mm7|chr11 (78407517-78407705) | |
| 868-1056, gnl|monDom2|scaffold_44 (14487071-14487297) | |
| 868-1056, gnl|oryCun1|scaffold_190404 (78948-78725) | |
| 868-1056, gnl|panTro1|chr19_random (12737488-12737713) | |
| 868-1056, gnl|rheMac2|chr16 (23769291-23769516) | |
| 868-1056, gnl|rn3|chr10 (64323049-64323273) | |
| 868-1056, gnl|tetNig1|chr16 (3849139-3848922) | |
| 868-1056, gnl|xenTro1|scaffold_50 (1452688-1452459) | |
| 1060-1872, gnl|bosTau2|chr8 (48393905-48394725) | |
| 1060-1872, gnl|Hg17|chr9 (101263742-101262821) | |
| 1060-1872, gnl|Mm7|chr4 (49550703-49549916) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 173-385, gnl|bosTau2|chr19 (13574097-13573885) | |
| 173-385, gnl|canFam2|chr9 (46106604-46106836) | |
| 173-385, gnl|danRer3|chr15 (11970853-11971085) | |
| 173-385, gnl|dasNov1|scaffold_9430 (8699-8467) | |
| 173-385, gnl|echTel1|scaffold_317923 (5475-5707) | |
| 173-385, gnl|fr1|chrUn (15705750-15705982) | |
| 173-385, gnl|galGal2|chrZ (27567009-27567330) | |
| 173-385, gnl|hg17|chr17 (23926255-23926487) | |
| 173-385, gnl|Hg17|chr17 (23926480-23926268) | |
| 173-385, gnl|loxAfr1|scaffold_66389 (1030-1262) | |
| 173-385, gnl|mm7|chr11 (78406407-78406173) | |
| 173-385, gnl|Mm7|chr11 (78406178-78406390) | |
| 173-385, gnl|monDom2|scaffold_44 (14491039-14491271) | |
| 173-385, gnl|oryCun1|scaffold_190404 (77622-77390) | |
| 173-385, gnl|panTro1|chr19_random (12738864-12739096) | |
| 173-385, gnl|rheMac2|chr16 (23770665-23770897) | |
| 173-385, gnl|rn3|chr10 (64324355-64324589) | |
| 173-385, gnl|tetNig1|chr16 (3848079-3847847) | |
| 173-385, gnl|xenTro1|scaffold_50 (1449183-1448952) | |
| 439-608, gnl|bosTau2|chr19 (13573624-13573456) | |
| 439-608, gnl|canFam2|chr9 (46105974-46106113) | |
| 439-608, gnl|danRer3|chr15 (11965597-11965735) | |
| 439-608, gnl|dasNov1|scaffold_209379 (595-470) | |
| 439-608, gnl|echTel1|scaffold_317923 (5078-5217) | |
| 439-608, gnl|fr1|chrUn (15705349-15705487) | |
| 439-608, gnl|galGal2|chrZ (27566505-27566644) | |
| 439-608, gnl|hg17|chr17 (23925838-23925977) | |
| 439-608, gnl|Hg17|chr17 (23926003-23925838) | |
| 439-608, gnl|loxAfr1|scaffold_5483 (20454-20593) | |
| 439-608, gnl|mm7|chr11 (78406788-78406650) | |
| 439-608, gnl|Mm7|chr11 (78406622-78406789) | |
| 439-608, gnl|monDom2|scaffold_44 (14490512-14490658) | |
| 439-608, gnl|oryCun1|scaffold_190404 (78028-77889) | |
| 439-608, gnl|panTro1|chr19_random (12738447-12738586) | |
| 439-608, gnl|rheMac2|chr16 (23770248-23770387) | |
| 439-608, gnl|rn3|chr10 (64323971-64324109) | |
| 439-608, gnl|tetNig1|chr16 (3848438-3848300) | |
| 439-608, gnl|xenTro1|scaffold_50 (1450042-1449904) | |
| 684-861, gnl|bosTau2|chr19 (13573025-13572848) | |
| 684-861, gnl|Hg17|chr17 (23925392-23925211) | |
| 684-861, gnl|Mm7|chr11 (78407215-78407392) | |
| 868-1056, gnl|bosTau2|chr19 (13572709-13572521) | |
| 868-1056, gnl|canFam2|chr9 (46105045-46105265) | |
| 868-1056, gnl|danRer3|chr15 (11962771-11962987) | |
| 868-1056, gnl|dasNov1|scaffold_209379 (1077-884) | |
| 868-1056, gnl|echTel1|scaffold_317923 (4135-4360) | |
| 868-1056, gnl|fr1|chrUn (15704658-15704874) | |
| 868-1056, gnl|galGal2|chrZ (27564586-27564813) | |
| 868-1056, gnl|hg17|chr17 (23924879-23925104) | |
| 868-1056, gnl|Hg17|chr17 (23925072-23924884) | |
| 868-1056, gnl|loxAfr1|scaffold_5483 (19386-19610) | |
| 868-1056, gnl|mm7|chr11 (78407712-78407488) | |
| 868-1056, gnl|Mm7|chr11 (78407517-78407705) | |
| 868-1056, gnl|monDom2|scaffold_44 (14487071-14487297) | |
| 868-1056, gnl|oryCun1|scaffold_190404 (78948-78725) | |
| 868-1056, gnl|panTro1|chr19_random (12737488-12737713) | |
| 868-1056, gnl|rheMac2|chr16 (23769291-23769516) | |
| 868-1056, gnl|rn3|chr10 (64323049-64323273) | |
| 868-1056, gnl|tetNig1|chr16 (3849139-3848922) | |
| 868-1056, gnl|xenTro1|scaffold_50 (1452688-1452459) | |
| 1060-1872, gnl|bosTau2|chr8 (48393905-48394725) | |
| 1060-1872, gnl|Hg17|chr9 (101263742-101262821) | |
| 1060-1872, gnl|Mm7|chr4 (49550703-49549916) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| nje (5.64128) | |
| sin (5.42337) | |
| lun (4.36418) | |
| kid (4.28127) | |
| eje (3.95335) | |
| jej (2.2752) | |
| ill (1.58033) | |
| duo (1.55521) | |
| cli (1.52812) | |
| cki (0.826173) | |
| nco (0.808669) | |
| fli (0.608643) | |
| cje (0.330469) | |
| eli (0.303628) | |
| rec (0.17307) | |
| ute (0.132784) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (5.64128) | |
| sin (5.42337) | |
| lun (4.36418) | |
| kid (4.28127) | |
| eje (3.95335) | |
| jej (2.2752) | |
| ill (1.58033) | |
| duo (1.55521) | |
| cli (1.52812) | |
| cki (0.826173) | |
| nco (0.808669) | |
| fli (0.608643) | |
| cje (0.330469) | |
| eli (0.303628) | |
| rec (0.17307) | |
| ute (0.132784) |