Ss1.1-Pig4-TMW8044D16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATTTTTGGCTTCGCTTGTAACTGCTCCACGGACTCGCCGTCTTCCTGTGGGCGGCTGG TGCGGCAGACTAGCAGGAGACTCCCAAGATGGAAACTTTATCTTTTCCCAGATATAATGT AGCTGAGATTGTGGTTCATATTCGAAACAAAATCTTAACAGGAGCTGATGGTAAAAACCT CTCCAAGAATGATCTTTCTCCAAATCCCAAGCCTGAAGTCTTGCACATGATCTACATGAG AGCTTTACAAATCGTATATGGAATTCGACTGGAGCATTTTTACATGATGCCAGTGAACTC TGAAGTTACATATCCACATATAATGGAAGGCTTCTTACCAGTCAGCAATTTATTTATTCA TCTGGACTCGTTTCTGCCCATCTGTCGGGTGAATGACTTTGAGATTGCTGATATTCTCTA TCCAAAGGCAAAACGGACAAGTCGGTTTTTAAGTGGCATTATCAACTTTATTCACTTCAG AGAAGCATGCCGCGAGACATATATGGAGTTTCTTTGGCAATATAAATCTTCTGTGGACAA AATGCAGCAGTTAAATACTGCACACCAGGAGGCATTAATGAAATTGGAGAGACTTGATTC TGTTCCAGTTGAAGAGCAAGCTGAGTTCAAGCAGCTTTCAGATGATATTCAGGAGCTGCA GCAATCATTGAATCAAGAGTTTCGTCAAAAAACGATAGTGCTGCAAGAGGGAAATTCCCA AAAGAAGTCAGATATTTCAGAGAAAACCAAGCGTTTGAATGAACTAAAATTGTCAGTGGT TTCTTTGAAAGAAGTACAAGAGAGTTTGAAAACAAAAATTGTGGATTCTCCAGAGAAGCT GAAGAATTATAAAGAAAAAATGAAAGATACGGTCCAGAAGCTTAAAAATTCCAGACAAGA AGTGATGGAAAAATATGAAATCTATCGAGACTCGGTTGACTGCCTGCCTTCATGTCAGCT GGAGGTGCAGTTGTATCAAAAGAAAATACAAGACCTTGCAGATAATAGAGAAAAATTAAC CACTGTCTTAAAGGAGAGCCTGAACTTGGAGGATCAAATTGAAAGTGATGAGTCGGAATT GAAGAAATTGAAGACTGAAGAAAATTCCTTTAAAAGACTGATGATCGTGAAGAAGGAAAA ACTTGCCACAGCACAGTTCCGGATAAATAAGAAGCATGAGGATGTCAAGCAGTACAAACG CACAGTGATTGAAGACTGCAATAAAGCTCAAGAAAAAAGAGGTGCTGTTTATGAGCAAGT AACCACAATTAATCAAGAAATCCAGAAAATTAAATTTGGAATTCAGCAACTAAAAGATGC TGCTGAAAGGGAGAAACTGAAATCCCAGGAAATATTTCTCAGCTTGAAAGCTGCTTTGGA GAAATACCACGAAGGCATTGAAAAGGCAACAGAGGACTGTCATGCTAACATAGAAGAGAA AACAGCTGAACTGAAGAGGAAGATGTTCAAAATGTCAACCTGATTAGCAAAGTTACAAAA CCTTTTTGTAAATAACCTGCCAATTTTAAATTTTATATTTTGAAAGGGAATAGTTAAGTT GAAGTTAATAGAAGTATCAAAAGTACCAAATAATGTTGGTTCAGTGAGTTTTTTTTTTTA ATATACTCTCATAGGTTATTATTTTGGAAGATAATGCATTTATTGTAGACTTTTACGAAC TTAAAATTAAAGCAACTTGTGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATTTTTGGCTTCGCTTGTAACTGCTCCACGGACTCGCCGTCTTCCTGTGGGCGGCTGG TGCGGCAGACTAGCAGGAGACTCCCAAGATGGAAACTTTATCTTTTCCCAGATATAATGT AGCTGAGATTGTGGTTCATATTCGAAACAAAATCTTAACAGGAGCTGATGGTAAAAACCT CTCCAAGAATGATCTTTCTCCAAATCCCAAGCCTGAAGTCTTGCACATGATCTACATGAG AGCTTTACAAATCGTATATGGAATTCGACTGGAGCATTTTTACATGATGCCAGTGAACTC TGAAGTTACATATCCACATATAATGGAAGGCTTCTTACCAGTCAGCAATTTATTTATTCA TCTGGACTCGTTTCTGCCCATCTGTCGGGTGAATGACTTTGAGATTGCTGATATTCTCTA TCCAAAGGCAAAACGGACAAGTCGGTTTTTAAGTGGCATTATCAACTTTATTCACTTCAG AGAAGCATGCCGCGAGACATATATGGAGTTTCTTTGGCAATATAAATCTTCTGTGGACAA AATGCAGCAGTTAAATACTGCACACCAGGAGGCATTAATGAAATTGGAGAGACTTGATTC TGTTCCAGTTGAAGAGCAAGCTGAGTTCAAGCAGCTTTCAGATGATATTCAGGAGCTGCA GCAATCATTGAATCAAGAGTTTCGTCAAAAAACGATAGTGCTGCAAGAGGGAAATTCCCA AAAGAAGTCAGATATTTCAGAGAAAACCAAGCGTTTGAATGAACTAAAATTGTCAGTGGT TTCTTTGAAAGAAGTACAAGAGAGTTTGAAAACAAAAATTGTGGATTCTCCAGAGAAGCT GAAGAATTATAAAGAAAAAATGAAAGATACGGTCCAGAAGCTTAAAAATTCCAGACAAGA AGTGATGGAAAAATATGAAATCTATCGAGACTCGGTTGACTGCCTGCCTTCATGTCAGCT GGAGGTGCAGTTGTATCAAAAGAAAATACAAGACCTTGCAGATAATAGAGAAAAATTAAC CACTGTCTTAAAGGAGAGCCTGAACTTGGAGGATCAAATTGAAAGTGATGAGTCGGAATT GAAGAAATTGAAGACTGAAGAAAATTCCTTTAAAAGACTGATGATCGTGAAGAAGGAAAA ACTTGCCACAGCACAGTTCCGGATAAATAAGAAGCATGAGGATGTCAAGCAGTACAAACG CACAGTGATTGAAGACTGCAATAAAGCTCAAGAAAAAAGAGGTGCTGTTTATGAGCAAGT AACCACAATTAATCAAGAAATCCAGAAAATTAAATTTGGAATTCAGCAACTAAAAGATGC TGCTGAAAGGGAGAAACTGAAATCCCAGGAAATATTTCTCAGCTTGAAAGCTGCTTTGGA GAAATACCACGAAGGCATTGAAAAGGCAACAGAGGACTGTCATGCTAACATAGAAGAGAA AACAGCTGAACTGAAGAGGAAGATGTTCAAAATGTCAACCTGATTAGCAAAGTTACAAAA CCTTTTTGTAAATAACCTGCCAATTTTAAATTTTATATTTTGAAAGGGAATAGTTAAGTT GAAGTTAATAGAAGTATCAAAAGTACCAAATAATGTTGGTTCAGTGAGTTTTTTTTTTTA ATATACTCTCATAGGTTATTATTTTGGAAGATAATGCATTTATTGTAGACTTTTACGAAC TTAAAATTAAAGCAACTTGTGCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1347-1465, - strand, RNAz p=0.67249 | |
| 1361-1465, - strand, RNAz p=0.737163 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1347-1465, - strand, RNAz p=0.67249 | |
| 1361-1465, - strand, RNAz p=0.737163 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 74-211, gnl|bosTau2|chr3 (6505803-6505666) | |
| 74-211, gnl|canFam2|chr38 (22598784-22598513) | |
| 74-211, gnl|dasNov1|scaffold_42598 (35319-35054) | |
| 74-211, gnl|echTel1|scaffold_199066 (11983-11713) | |
| 74-211, gnl|hg17|chr1 (160027378-160027644) | |
| 74-211, gnl|Hg17|chr1 (160027485-160027622) | |
| 74-211, gnl|loxAfr1|scaffold_294 (9783-9505) | |
| 74-211, gnl|mm7|chr1 (169502041-169501768) | |
| 74-211, gnl|Mm7|chr1 (169501925-169501788) | |
| 74-211, gnl|oryCun1|scaffold_214137 (11351-11087) | |
| 74-211, gnl|panTro1|chr1 (142234898-142235168) | |
| 74-211, gnl|rheMac2|chr1 (193233142-193233412) | |
| 74-211, gnl|rn3|chr13 (85326462-85326204) | |
| 414-523, gnl|bosTau2|chr3 (6493459-6493350) | |
| 414-523, gnl|Hg17|chr1 (160038188-160038296) | |
| 414-523, gnl|Mm7|chr1 (169493145-169493037) | |
| 757-895, gnl|bosTau2|chr3 (6486355-6486217) | |
| 757-895, gnl|canFam2|chr38 (22583885-22583684) | |
| 757-895, gnl|dasNov1|scaffold_25283 (44504-44305) | |
| 757-895, gnl|echTel1|scaffold_278429 (54546-54739) | |
| 757-895, gnl|hg17|chr1 (160045150-160045346) | |
| 757-895, gnl|Hg17|chr1 (160045180-160045318) | |
| 757-895, gnl|loxAfr1|scaffold_41999 (12262-12066) | |
| 757-895, gnl|mm7|chr1 (169487048-169486866) | |
| 757-895, gnl|Mm7|chr1 (169487014-169486876) | |
| 757-895, gnl|monDom2|scaffold_223 (490536-490340) | |
| 757-895, gnl|oryCun1|scaffold_204890 (211796-211992) | |
| 757-895, gnl|panTro1|chr1 (142253181-142253377) | |
| 757-895, gnl|rheMac2|chr1 (193251021-193251217) | |
| 757-895, gnl|rn3|chr13 (85311640-85311457) | |
| 1035-1212, gnl|bosTau2|chr3 (6483191-6483014) | |
| 1035-1212, gnl|Hg17|chr1 (160049209-160049386) | |
| 1035-1212, gnl|Mm7|chr1 (169482635-169482458) | |
| 1347-1685, gnl|bosTau2|chr3 (6471893-6471564) | |
| 1347-1685, gnl|canFam2|chr38 (22574138-22573862) | |
| 1347-1685, gnl|dasNov1|scaffold_42598 (2379-2093) | |
| 1347-1685, gnl|echTel1|scaffold_204540 (3242-2948) | |
| 1347-1685, gnl|hg17|chr1 (160056766-160057058) | |
| 1347-1685, gnl|Hg17|chr1 (160056781-160057108) | |
| 1347-1685, gnl|loxAfr1|scaffold_41999 (4350-4046) | |
| 1347-1685, gnl|mm7|chr1 (169475414-169475097) | |
| 1347-1685, gnl|Mm7|chr1 (169475398-169475094) | |
| 1347-1685, gnl|monDom2|scaffold_16 (13409225-13409554) | |
| 1347-1685, gnl|oryCun1|scaffold_204890 (222090-222394) | |
| 1347-1685, gnl|panTro1|chr1 (142264867-142265159) | |
| 1347-1685, gnl|rheMac2|chr1 (193262015-193262312) | |
| 1347-1685, gnl|rn3|chr13 (85301234-85300940) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 74-211, gnl|bosTau2|chr3 (6505803-6505666) | |
| 74-211, gnl|canFam2|chr38 (22598784-22598513) | |
| 74-211, gnl|dasNov1|scaffold_42598 (35319-35054) | |
| 74-211, gnl|echTel1|scaffold_199066 (11983-11713) | |
| 74-211, gnl|hg17|chr1 (160027378-160027644) | |
| 74-211, gnl|Hg17|chr1 (160027485-160027622) | |
| 74-211, gnl|loxAfr1|scaffold_294 (9783-9505) | |
| 74-211, gnl|mm7|chr1 (169502041-169501768) | |
| 74-211, gnl|Mm7|chr1 (169501925-169501788) | |
| 74-211, gnl|oryCun1|scaffold_214137 (11351-11087) | |
| 74-211, gnl|panTro1|chr1 (142234898-142235168) | |
| 74-211, gnl|rheMac2|chr1 (193233142-193233412) | |
| 74-211, gnl|rn3|chr13 (85326462-85326204) | |
| 414-523, gnl|bosTau2|chr3 (6493459-6493350) | |
| 414-523, gnl|Hg17|chr1 (160038188-160038296) | |
| 414-523, gnl|Mm7|chr1 (169493145-169493037) | |
| 757-895, gnl|bosTau2|chr3 (6486355-6486217) | |
| 757-895, gnl|canFam2|chr38 (22583885-22583684) | |
| 757-895, gnl|dasNov1|scaffold_25283 (44504-44305) | |
| 757-895, gnl|echTel1|scaffold_278429 (54546-54739) | |
| 757-895, gnl|hg17|chr1 (160045150-160045346) | |
| 757-895, gnl|Hg17|chr1 (160045180-160045318) | |
| 757-895, gnl|loxAfr1|scaffold_41999 (12262-12066) | |
| 757-895, gnl|mm7|chr1 (169487048-169486866) | |
| 757-895, gnl|Mm7|chr1 (169487014-169486876) | |
| 757-895, gnl|monDom2|scaffold_223 (490536-490340) | |
| 757-895, gnl|oryCun1|scaffold_204890 (211796-211992) | |
| 757-895, gnl|panTro1|chr1 (142253181-142253377) | |
| 757-895, gnl|rheMac2|chr1 (193251021-193251217) | |
| 757-895, gnl|rn3|chr13 (85311640-85311457) | |
| 1035-1212, gnl|bosTau2|chr3 (6483191-6483014) | |
| 1035-1212, gnl|Hg17|chr1 (160049209-160049386) | |
| 1035-1212, gnl|Mm7|chr1 (169482635-169482458) | |
| 1347-1685, gnl|bosTau2|chr3 (6471893-6471564) | |
| 1347-1685, gnl|canFam2|chr38 (22574138-22573862) | |
| 1347-1685, gnl|dasNov1|scaffold_42598 (2379-2093) | |
| 1347-1685, gnl|echTel1|scaffold_204540 (3242-2948) | |
| 1347-1685, gnl|hg17|chr1 (160056766-160057058) | |
| 1347-1685, gnl|Hg17|chr1 (160056781-160057108) | |
| 1347-1685, gnl|loxAfr1|scaffold_41999 (4350-4046) | |
| 1347-1685, gnl|mm7|chr1 (169475414-169475097) | |
| 1347-1685, gnl|Mm7|chr1 (169475398-169475094) | |
| 1347-1685, gnl|monDom2|scaffold_16 (13409225-13409554) | |
| 1347-1685, gnl|oryCun1|scaffold_204890 (222090-222394) | |
| 1347-1685, gnl|panTro1|chr1 (142264867-142265159) | |
| 1347-1685, gnl|rheMac2|chr1 (193262015-193262312) | |
| 1347-1685, gnl|rn3|chr13 (85301234-85300940) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| gul (1.06553) | |
| spl (0.429553) | |
| thg (0.253582) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| pla (0.133672) | |
| ova (0.129132) | |
| clu (0.119646) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (1.06553) | |
| spl (0.429553) | |
| thg (0.253582) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| pla (0.133672) | |
| ova (0.129132) | |
| clu (0.119646) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |