Non-Coding RNA Search

Ss1.1-Pig4-TMW8044D19.3

Sequence:


               
               TGCAGGCTGCCCTCTGCCTGGAGAATTTCTCCTCCCAGGTCGTGGAACGACACAACAAAG
CAGTGGACCTGCCCCAAGGCCATGTGTGCCTGGTCAGGCTGGCTTCTGATGTTCTGTCCC
CTGGGCTGGGACAGGTTTTTTTTTTTTTTTTAAGTCTTGAAACTTAAACTCTGTGCTTGT
AGGAGACTGTAACCTTTTGTCTTTTTTTTTTTTTTTTTTTTAAACAAACAACCTCCACCT
CCAGTGGCTGTGACTGGTCCCAGTGATTGTACCTTATTGGTCGCTGTGGGTCTGGGCGGG
CCTGGAGCCAGAAGGCGACTACTGTTCCTCGCCAGAGCCACCCCAGGTGGGGAGGGAGGG
AGGTTTCAGACTCCACTTCCTCTCCCTCATCCTCTTATTCTGTGGATCCAGTAGAAGCGG
TGGGGGCCCTCTGCCAGCTTCCTGAGCTCTGCCTGAAGATGGCCATCCAGCACTGGTTGG
GGCCAAGGGCTGCACTGGTGGCCACCAGCCATGCCTAGGAGCTAGGGCCTGGAAGCTAGG
CAACCTCTGGCCACAGGGGCCGCTTCTTGCCCTCCCAGCTGAGAGGGGCTGCTGTTTTGC
CTTGTCTGTCAGTGCAGTGCCTGTGCTAGAGGTAGAGAGGTGAGTTCTCTGGGGCTTCCA
GCTGGGCCCTCCGCCTGCTGTGGCTCCTCTGCTCCCTCGCTCACTGTACCTTTTCTTATT
CTGGTGGATCCTCCCTCCCCTAATTAAAGTCTCTTCTTGCCCCTCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGCTGCCCTCTGCCTGGAGAATTTCTCCTCCCAGGTCGTGGAACGACACAACAAAG
CAGTGGACCTGCCCCAAGGCCATGTGTGCCTGGTCAGGCTGGCTTCTGATGTTCTGTCCC
CTGGGCTGGGACAGGTTTTTTTTTTTTTTTTAAGTCTTGAAACTTAAACTCTGTGCTTGT
AGGAGACTGTAACCTTTTGTCTTTTTTTTTTTTTTTTTTTTAAACAAACAACCTCCACCT
CCAGTGGCTGTGACTGGTCCCAGTGATTGTACCTTATTGGTCGCTGTGGGTCTGGGCGGG
CCTGGAGCCAGAAGGCGACTACTGTTCCTCGCCAGAGCCACCCCAGGTGGGGAGGGAGGG
AGGTTTCAGACTCCACTTCCTCTCCCTCATCCTCTTATTCTGTGGATCCAGTAGAAGCGG
TGGGGGCCCTCTGCCAGCTTCCTGAGCTCTGCCTGAAGATGGCCATCCAGCACTGGTTGG
GGCCAAGGGCTGCACTGGTGGCCACCAGCCATGCCTAGGAGCTAGGGCCTGGAAGCTAGG
CAACCTCTGGCCACAGGGGCCGCTTCTTGCCCTCCCAGCTGAGAGGGGCTGCTGTTTTGC
CTTGTCTGTCAGTGCAGTGCCTGTGCTAGAGGTAGAGAGGTGAGTTCTCTGGGGCTTCCA
GCTGGGCCCTCCGCCTGCTGTGGCTCCTCTGCTCCCTCGCTCACTGTACCTTTTCTTATT
CTGGTGGATCCTCCCTCCCCTAATTAAAGTCTCTTCTTGCCCCTCTGG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               51-168, - strand, RNAz p=0.817506
               

               
               282-429, - strand, RNAz p=0.961134
               

               
               470-588, + strand, RNAz p=0.951906

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-168, - strand, RNAz p=0.817506
               

               
               282-429, - strand, RNAz p=0.961134
               

               
               470-588, + strand, RNAz p=0.951906

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005718, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005718, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               51-623, gnl|bosTau2|chr2 (2009124-2008565)
               

               
               51-623, gnl|Hg17|chr3 (9823056-9823730)
               

               
               51-623, gnl|Mm7|chr6 (113549874-113550389)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-623, gnl|bosTau2|chr2 (2009124-2008565)
               

               
               51-623, gnl|Hg17|chr3 (9823056-9823730)
               

               
               51-623, gnl|Mm7|chr6 (113549874-113550389)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               fcc (0.593354)
               

               
               cga (0.558191)
               

               
               hlv (0.417769)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               eli (0.303628)
               

               
               nbm (0.297974)
               

               
               jej (0.296765)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               cga (0.558191)
               

               
               hlv (0.417769)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               eli (0.303628)
               

               
               nbm (0.297974)
               

               
               jej (0.296765)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	51-168, - strand, RNAz p=0.817506
	282-429, - strand, RNAz p=0.961134
	470-588, + strand, RNAz p=0.951906

	51-623, gnl\|bosTau2\|chr2 (2009124-2008565)
	51-623, gnl\|Hg17\|chr3 (9823056-9823730)
	51-623, gnl\|Mm7\|chr6 (113549874-113550389)

	fcc (0.593354)
	cga (0.558191)
	hlv (0.417769)
	col (0.390016)
	elu (0.385356)
	eli (0.303628)
	nbm (0.297974)
	jej (0.296765)
	pty (0.285429)
	lnt (0.284616)
	cov (0.264306)
	mas (0.210305)
	eye (0.170503)
	cag (0.151194)
	cly (0.120642)
	eru (0.120048)