Ss1.1-Pig4-TMW8044D21.5
|
ACCTGCTGATCGCCCGCGTCTGCGCCGCCCGGCATGGCTGGCAAAGCGCACAGGCTAAGT
GCGGAGGAGAGGGACCAGCTGCTGCCAAACCTGCGGGCCGTGGGGTGGAACGAGCTGGAA
GGCCGGGATGCCATCTTCAAGCAGTTTCATTTCAAAGACTTCAATAGGGCTTTTGGCTTC
ATGACGAGAGTGGCCCTGCAGGCTGAGAAATTGGACCACCACCCTGAATGGTTTAACGTG
TACAACAAGGTCCACATCACCCTGAGCACCCACGAGTGTGCGGGCCTTTCAGAACGGGAC
ATAAACCTGGCCAGCTTCATCGAGCAAGTAGCGGTGTCCATGACATAGACCTTGCCCTTC
ATCTCTGAATTCTTCAGGGAGGAAGGGGGGACTGGACTGGGGATCCAGAGAGGGAACCAG
GGAGCCCCAAGGTACTGCTGCAGTCAGAACTGCCAAGTGGACGGTGCTGCCTCTGTTCAG
AGGCAAGTCCTCCCTGTGCAAGGAGAAGCCAGCATCGCTGCCAACCCCAGGAGCTTAGAC
CGTTTCTCCCCACACCACCCTCTTCCTCCTTGGGGCTGTTACATGGGCACTGATTTGAAT
AAGAGCTTCCCTTTCCTTATAACGTCCTGGCAACAGTAGTGATTTCTTTTCCAGACTGTG
TCTCACTCCCTTTCTAATTCATTTCCTGAGAAGCTAAGATAGATGCTGTGTCTGAGAAAA
AGTCTTCTCTTAGGAACCAGGGACCCCAAAGTCATCCTCATCCTGTGTGACAGAAACACA
TGTGCTTTTATGCCGCAAATAAAATCCTTATTTCACTTGGAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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ACCTGCTGATCGCCCGCGTCTGCGCCGCCCGGCATGGCTGGCAAAGCGCACAGGCTAAGT
GCGGAGGAGAGGGACCAGCTGCTGCCAAACCTGCGGGCCGTGGGGTGGAACGAGCTGGAA
GGCCGGGATGCCATCTTCAAGCAGTTTCATTTCAAAGACTTCAATAGGGCTTTTGGCTTC
ATGACGAGAGTGGCCCTGCAGGCTGAGAAATTGGACCACCACCCTGAATGGTTTAACGTG
TACAACAAGGTCCACATCACCCTGAGCACCCACGAGTGTGCGGGCCTTTCAGAACGGGAC
ATAAACCTGGCCAGCTTCATCGAGCAAGTAGCGGTGTCCATGACATAGACCTTGCCCTTC
ATCTCTGAATTCTTCAGGGAGGAAGGGGGGACTGGACTGGGGATCCAGAGAGGGAACCAG
GGAGCCCCAAGGTACTGCTGCAGTCAGAACTGCCAAGTGGACGGTGCTGCCTCTGTTCAG
AGGCAAGTCCTCCCTGTGCAAGGAGAAGCCAGCATCGCTGCCAACCCCAGGAGCTTAGAC
CGTTTCTCCCCACACCACCCTCTTCCTCCTTGGGGCTGTTACATGGGCACTGATTTGAAT
AAGAGCTTCCCTTTCCTTATAACGTCCTGGCAACAGTAGTGATTTCTTTTCCAGACTGTG
TCTCACTCCCTTTCTAATTCATTTCCTGAGAAGCTAAGATAGATGCTGTGTCTGAGAAAA
AGTCTTCTCTTAGGAACCAGGGACCCCAAAGTCATCCTCATCCTGTGTGACAGAAACACA
TGTGCTTTTATGCCGCAAATAAAATCCTTATTTCACTTGGAAAAAAAA
|
|
gi|56090297|ref|NP_001007602.1| |
Protein identifier
|
gi|56090297|ref|NP_001007602.1| |
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36-169, gnl|bosTau2|chr28 (20415756-20415623) |
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36-169, gnl|canFam2|chr4 (24932714-24932866) |
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36-169, gnl|dasNov1|scaffold_8078 (18293-18158) |
|
36-169, gnl|echTel1|scaffold_308477 (43225-43387) |
|
36-169, gnl|fr1|chrUn (195536626-195536787) |
|
36-169, gnl|hg17|chr10 (72315551-72315716) |
|
36-169, gnl|Hg17|chr10 (72315693-72315560) |
|
36-169, gnl|loxAfr1|scaffold_133580 (4205-4366) |
|
36-169, gnl|mm7|chr10 (60609846-60609690) |
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36-169, gnl|Mm7|chr10 (60609710-60609843) |
|
36-169, gnl|monDom2|scaffold_41 (1112660-1112491) |
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36-169, gnl|oryCun1|scaffold_204750 (95205-95080) |
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36-169, gnl|panTro1|chr8 (73534094-73534259) |
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36-169, gnl|rheMac2|chr9 (66133813-66133649) |
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36-169, gnl|rn3|chr20 (28465478-28465322) |
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36-169, gnl|tetNig1|chr17 (854035-854196) |
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36-169, gnl|xenTro1|scaffold_2027 (39895-40043) |
| |
|
248-820, gnl|bosTau2|chr28 (20414045-20413472) |
|
248-820, gnl|Hg17|chr10 (72313813-72313273) |
|
248-820, gnl|Mm7|chr10 (60611452-60611972) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
36-169, gnl|bosTau2|chr28 (20415756-20415623) |
|
36-169, gnl|canFam2|chr4 (24932714-24932866) |
|
36-169, gnl|dasNov1|scaffold_8078 (18293-18158) |
|
36-169, gnl|echTel1|scaffold_308477 (43225-43387) |
|
36-169, gnl|fr1|chrUn (195536626-195536787) |
|
36-169, gnl|hg17|chr10 (72315551-72315716) |
|
36-169, gnl|Hg17|chr10 (72315693-72315560) |
|
36-169, gnl|loxAfr1|scaffold_133580 (4205-4366) |
|
36-169, gnl|mm7|chr10 (60609846-60609690) |
|
36-169, gnl|Mm7|chr10 (60609710-60609843) |
|
36-169, gnl|monDom2|scaffold_41 (1112660-1112491) |
|
36-169, gnl|oryCun1|scaffold_204750 (95205-95080) |
|
36-169, gnl|panTro1|chr8 (73534094-73534259) |
|
36-169, gnl|rheMac2|chr9 (66133813-66133649) |
|
36-169, gnl|rn3|chr20 (28465478-28465322) |
|
36-169, gnl|tetNig1|chr17 (854035-854196) |
|
36-169, gnl|xenTro1|scaffold_2027 (39895-40043) |
| |
|
248-820, gnl|bosTau2|chr28 (20414045-20413472) |
|
248-820, gnl|Hg17|chr10 (72313813-72313273) |
|
248-820, gnl|Mm7|chr10 (60611452-60611972) |
|
cli (0.305623) |
|
ece (0.229305) |
|
mas (0.210305) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
col (0.195008) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
eli (0.151814) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ova (0.129132) |
|
sug (0.127291) |
|
bla (0.124347) |
|
jca (0.11396) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
cli (0.305623) |
|
ece (0.229305) |
|
mas (0.210305) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
col (0.195008) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
eli (0.151814) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ova (0.129132) |
|
sug (0.127291) |
|
bla (0.124347) |
|
jca (0.11396) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
eje (0.0988338) |
