Ss1.1-Pig4-TMW8044D23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCTCACGGAAGCCGGCTTTGGCCCTGCGGCTGCTGCCGTCGCCGCGGAGAAATTGTTG GAGCTGGCAGCCTAGGAATGAATCTCCTTTCAGCCTCCAAGCTCACCTGGTCAGAATCCT TGGATGAGCCTGTGGGACCCTTCCTCCTAGCCTTGTGGTTTGGAACCAGTGGCTTTGGGA CTGTAAGAGGATGGACAAAGATTCTCAGGGGCTGCTAGATTCATCCCTGATGGCATCAGG CACTGCCAGCCGCTCAGAGGATGAGGAGTCGCTGGCAGGGCAGAAGCGGGCCTCCTCACA GGCCTTGGGCACCATCCCTAAACGGAGAAGCTCCTCCAGATTCATCAAGAGGAAGAAGTT TGATGATGAGCTGGTGGAGAGCAGCCTGGCTAAGTCCTCTACCCGGGCGAAGGGGGCCAG TGGGGTGGAACCAGGGCGCTGTTCGGGGAGTGAGCCTTCCTCCAGTGAGAAGAAGAAGGT GTCCAAGGCCCCCAGCACTCCAGTGCCACCCAGCCCCGCTCCAGCCCCTGGACTCACCAA GCGTGTGAAGAAGAGCAAACAGCCCCTGCAGGTGACCAAGGATCTGGGCCGCTGGAAGCC TGCAGACGACCTCCTGCTCATCAATGCTGTGTTGCAGACCAACGACCTGACATCTGTCCA CCTGGGCGTGAAGTTCAGCTGCCGCTTCACCCTGCGGGAAGTCCAGGAGCGTTGGTACGC CCTGCTCTACGATCCTGTCATCTCCAAGCTGGCCTGCCAGGCTATGAGACAGCTGCACCC AGAGGCCATTGCCGCCATCCAGAGCAAGGCGCTGTTTAGCAAGGCTGAGGAGCAGCTGCT GAGCAAAGTGGGATCGACCAGCCAGCCCACCTTGGAGACCTTCCAGGACCTGCTGCACAG ACACCCCGATGCCTTCTACCTGGCCCGTACTGCCAAGGCTCTGCAGGCCCACTGGCAGCT CATGAAGCAGTATTATCTGCTGGAGGACCAGACAGTGCAGCCGCTGCCCAAGGGGGACCA AGTGCTGAACTTCTCCGATGCAGAGGACTTGATTGATGACAGTAAGCTCAAGGACATGCG AGATGAAGTCTTAGAACATGAGCTGACAGTGGCCGACCGGCGCCAGAAACGAGAGATTCG GCAGCTGGAGCAGGAGCTGCATAAGTGGCAGGTGCTAGTAGACAGCATCACAGGCATGAG CTCTCCGGACTTCGACAACCAGACCCTGGCGGTGCTGCGGGGCCGCATGGTGCGGTACCT GATGCGCTCGCGAGAGATCACCCTGGGCAGAGCAACCAAGGACAACCAGATTGACGTGGA CCTGTCTCTGGAGGGCCCAGCCTGGAAGATCTCCCGGAAGCAAGGGGTCATCAAGCTGAA AAACAACGGTGACTTCTTCATTGCCAATGAGGGCCGGCGGCCCATCTACATCGATGGACG GCCGGTGCTGTGTGGCTCCAAGTGGCGCCTCAGCAACAACTCGGTGGTGGAGATTGCCAG CCTGCGATTCGTCTTCCTCATCAACCAGGACCTCATTGCCCTTATTCGGGCCGAGGCTGC CAAGATCACGCCACAGTGAGGAGGGGTGGCAGGATCCGCGGGCTCTTTCTGGCCTCAATT TCCCCGCCATCCCAGCCCCCTGGAGCTGGGAACTCAGGCTCCTGGAGAAACCAGAGTGGG CAGCAGGAGGCTCAGCTCCTGGCCCCTTGATCTGAGCCTCTGCGGGGGGGGATGGGGGGA GCGAGGCTGGCCCTCGGGAAGCCCCCAGAGGCTGGGACCCTCCTGCTTCCTCGGTGCCAG AGCCCTCCCTTCTCTCCAGGCAGACCGCCCTCCCCCGCTCCCTACCTTTGCCCCATGTCC CCAGCTAATTAGCTTCAGACGTTTCCTTTATTATTTTTCTTTTGTAAATAGAAAGCACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCTCACGGAAGCCGGCTTTGGCCCTGCGGCTGCTGCCGTCGCCGCGGAGAAATTGTTG GAGCTGGCAGCCTAGGAATGAATCTCCTTTCAGCCTCCAAGCTCACCTGGTCAGAATCCT TGGATGAGCCTGTGGGACCCTTCCTCCTAGCCTTGTGGTTTGGAACCAGTGGCTTTGGGA CTGTAAGAGGATGGACAAAGATTCTCAGGGGCTGCTAGATTCATCCCTGATGGCATCAGG CACTGCCAGCCGCTCAGAGGATGAGGAGTCGCTGGCAGGGCAGAAGCGGGCCTCCTCACA GGCCTTGGGCACCATCCCTAAACGGAGAAGCTCCTCCAGATTCATCAAGAGGAAGAAGTT TGATGATGAGCTGGTGGAGAGCAGCCTGGCTAAGTCCTCTACCCGGGCGAAGGGGGCCAG TGGGGTGGAACCAGGGCGCTGTTCGGGGAGTGAGCCTTCCTCCAGTGAGAAGAAGAAGGT GTCCAAGGCCCCCAGCACTCCAGTGCCACCCAGCCCCGCTCCAGCCCCTGGACTCACCAA GCGTGTGAAGAAGAGCAAACAGCCCCTGCAGGTGACCAAGGATCTGGGCCGCTGGAAGCC TGCAGACGACCTCCTGCTCATCAATGCTGTGTTGCAGACCAACGACCTGACATCTGTCCA CCTGGGCGTGAAGTTCAGCTGCCGCTTCACCCTGCGGGAAGTCCAGGAGCGTTGGTACGC CCTGCTCTACGATCCTGTCATCTCCAAGCTGGCCTGCCAGGCTATGAGACAGCTGCACCC AGAGGCCATTGCCGCCATCCAGAGCAAGGCGCTGTTTAGCAAGGCTGAGGAGCAGCTGCT GAGCAAAGTGGGATCGACCAGCCAGCCCACCTTGGAGACCTTCCAGGACCTGCTGCACAG ACACCCCGATGCCTTCTACCTGGCCCGTACTGCCAAGGCTCTGCAGGCCCACTGGCAGCT CATGAAGCAGTATTATCTGCTGGAGGACCAGACAGTGCAGCCGCTGCCCAAGGGGGACCA AGTGCTGAACTTCTCCGATGCAGAGGACTTGATTGATGACAGTAAGCTCAAGGACATGCG AGATGAAGTCTTAGAACATGAGCTGACAGTGGCCGACCGGCGCCAGAAACGAGAGATTCG GCAGCTGGAGCAGGAGCTGCATAAGTGGCAGGTGCTAGTAGACAGCATCACAGGCATGAG CTCTCCGGACTTCGACAACCAGACCCTGGCGGTGCTGCGGGGCCGCATGGTGCGGTACCT GATGCGCTCGCGAGAGATCACCCTGGGCAGAGCAACCAAGGACAACCAGATTGACGTGGA CCTGTCTCTGGAGGGCCCAGCCTGGAAGATCTCCCGGAAGCAAGGGGTCATCAAGCTGAA AAACAACGGTGACTTCTTCATTGCCAATGAGGGCCGGCGGCCCATCTACATCGATGGACG GCCGGTGCTGTGTGGCTCCAAGTGGCGCCTCAGCAACAACTCGGTGGTGGAGATTGCCAG CCTGCGATTCGTCTTCCTCATCAACCAGGACCTCATTGCCCTTATTCGGGCCGAGGCTGC CAAGATCACGCCACAGTGAGGAGGGGTGGCAGGATCCGCGGGCTCTTTCTGGCCTCAATT TCCCCGCCATCCCAGCCCCCTGGAGCTGGGAACTCAGGCTCCTGGAGAAACCAGAGTGGG CAGCAGGAGGCTCAGCTCCTGGCCCCTTGATCTGAGCCTCTGCGGGGGGGGATGGGGGGA GCGAGGCTGGCCCTCGGGAAGCCCCCAGAGGCTGGGACCCTCCTGCTTCCTCGGTGCCAG AGCCCTCCCTTCTCTCCAGGCAGACCGCCCTCCCCCGCTCCCTACCTTTGCCCCATGTCC CCAGCTAATTAGCTTCAGACGTTTCCTTTATTATTTTTCTTTTGTAAATAGAAAGCACTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1530-1834, - strand, RNAz p=0.999995 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1530-1834, - strand, RNAz p=0.999995 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 199-339, gnl|bosTau2|chr5 (21813969-21814109) | |
| 199-339, gnl|canFam2|chr27 (8086656-8086516) | |
| 199-339, gnl|dasNov1|scaffold_16774 (55296-55436) | |
| 199-339, gnl|fr1|chrUn (124212894-124212757) | |
| 199-339, gnl|hg17|chr12 (48246114-48246254) | |
| 199-339, gnl|Hg17|chr12 (48246267-48246127) | |
| 199-339, gnl|loxAfr1|scaffold_55758 (7927-7787) | |
| 199-339, gnl|mm7|chr15 (99235108-99235248) | |
| 199-339, gnl|Mm7|chr15 (99235261-99235121) | |
| 199-339, gnl|monDom2|scaffold_181 (451278-451418) | |
| 199-339, gnl|oryCun1|scaffold_203810 (4587-4447) | |
| 199-339, gnl|panTro1|chr10 (49429539-49429679) | |
| 199-339, gnl|rheMac2|chr11 (46704952-46705092) | |
| 199-339, gnl|rn3|chr7 (138085712-138085852) | |
| 199-339, gnl|xenTro1|scaffold_61 (2797047-2797170) | |
| 477-637, gnl|bosTau2|chr5 (21815207-21815367) | |
| 477-637, gnl|Hg17|chr12 (48244947-48244787) | |
| 477-637, gnl|Mm7|chr15 (99234107-99233947) | |
| 856-995, gnl|bosTau2|chr5 (21816948-21817087) | |
| 856-995, gnl|Hg17|chr12 (48243190-48243051) | |
| 856-995, gnl|Mm7|chr15 (99232311-99232172) | |
| 1100-1208, gnl|bosTau2|chr5 (21819847-21819953) | |
| 1100-1208, gnl|Hg17|chr12 (48239872-48239766) | |
| 1100-1208, gnl|Mm7|chr15 (99229483-99229377) | |
| 1491-1920, gnl|bosTau2|chr5 (21820953-21821381) | |
| 1491-1920, gnl|Hg17|chr12 (48238781-48238361) | |
| 1491-1920, gnl|Mm7|chr15 (99228467-99228074) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 199-339, gnl|bosTau2|chr5 (21813969-21814109) | |
| 199-339, gnl|canFam2|chr27 (8086656-8086516) | |
| 199-339, gnl|dasNov1|scaffold_16774 (55296-55436) | |
| 199-339, gnl|fr1|chrUn (124212894-124212757) | |
| 199-339, gnl|hg17|chr12 (48246114-48246254) | |
| 199-339, gnl|Hg17|chr12 (48246267-48246127) | |
| 199-339, gnl|loxAfr1|scaffold_55758 (7927-7787) | |
| 199-339, gnl|mm7|chr15 (99235108-99235248) | |
| 199-339, gnl|Mm7|chr15 (99235261-99235121) | |
| 199-339, gnl|monDom2|scaffold_181 (451278-451418) | |
| 199-339, gnl|oryCun1|scaffold_203810 (4587-4447) | |
| 199-339, gnl|panTro1|chr10 (49429539-49429679) | |
| 199-339, gnl|rheMac2|chr11 (46704952-46705092) | |
| 199-339, gnl|rn3|chr7 (138085712-138085852) | |
| 199-339, gnl|xenTro1|scaffold_61 (2797047-2797170) | |
| 477-637, gnl|bosTau2|chr5 (21815207-21815367) | |
| 477-637, gnl|Hg17|chr12 (48244947-48244787) | |
| 477-637, gnl|Mm7|chr15 (99234107-99233947) | |
| 856-995, gnl|bosTau2|chr5 (21816948-21817087) | |
| 856-995, gnl|Hg17|chr12 (48243190-48243051) | |
| 856-995, gnl|Mm7|chr15 (99232311-99232172) | |
| 1100-1208, gnl|bosTau2|chr5 (21819847-21819953) | |
| 1100-1208, gnl|Hg17|chr12 (48239872-48239766) | |
| 1100-1208, gnl|Mm7|chr15 (99229483-99229377) | |
| 1491-1920, gnl|bosTau2|chr5 (21820953-21821381) | |
| 1491-1920, gnl|Hg17|chr12 (48238781-48238361) | |
| 1491-1920, gnl|Mm7|chr15 (99228467-99228074) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| ecc (0.23007) | |
| col (0.195008) | |
| nep (0.183925) | |
| nje (0.16592) | |
| csp (0.161186) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.23007) | |
| col (0.195008) | |
| nep (0.183925) | |
| nje (0.16592) | |
| csp (0.161186) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) |