Non-Coding RNA Search

Ss1.1-Pig4-TMW8044E03.3

Sequence:


               
               GAGAAATTGGAATTTAGTGTTAACCCTGAAGGGATAGCTTATTTGCATCTACTTTTTACT
GTGTGTTCCTCCCTAGGCAGCTTATTCATGTATTGACATATTTTGGTAATAGCTGAGAAC
CTAAAACTGGGATTATATGTTGTATTTTTTTATTTTTTTAAACCAGGCAGTGCAGTTTGG
TTCAGATCTTAATTGTGTGAAGATAGGCTTTAAAATCTTAGGGTATTGTGTTTGTAACAC
TGATATTTAGTGGAATATACTTTAGGAGAGTCTGCTACAGGGGTTTTGTATGCTTTTTTC
ATGTCGAAAGAGATTTTCCAACACTTGGTGTGGAAATTCACTTGGTGAGAAATAGGCACT
TCTAGAAAACTCCTGAAAAACAATTACTTTTCTTGATCTGCAGACCTGTGTACAGTACAG
GTGCCATTACGTTATGGCAACTTGATTAGCCCTGTGTGTGCATTTCTAGCCCTATTCATT
TGTTCCTCCCCTACGCCTTTCCATTTCCAGCTCCATTTTGTAGACTCGAAGTTCACGAAG
GGAAAGAATGAGGAGGAAAGAAGTGACGTGAGCGTCAGTTTCCTAAACAGTATAGTTGGC
TGAGAAGAGCAGCCCCTGCTTATGACAAGGACAGAAGCTCACTGCTCAACTTTCTTTCCC
GTCTCTTCCTGACTATAAACACCAGGGTGAATAGATGATTAACAGTAAGCAGTGGCTTCC
ATATCACTAGCTCTTGTCCTATACACTCTGCTCCAACCAGACTGCCCTGTGCTGGGCCCC
GGCCCTGCCACATTCCTTCACTGCTGCTTTCTGTAGCCAAGTGCCCTCTGCCTGGAAGCC
TCCCTGACACTTCTCCCTGCCAGATGCACTTCTTCAAGGCCATTCATTGACCTCCATCTG
CTGCACCCTTGCCAAAACTTTAAGAAGGGATGAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAATTGGAATTTAGTGTTAACCCTGAAGGGATAGCTTATTTGCATCTACTTTTTACT
GTGTGTTCCTCCCTAGGCAGCTTATTCATGTATTGACATATTTTGGTAATAGCTGAGAAC
CTAAAACTGGGATTATATGTTGTATTTTTTTATTTTTTTAAACCAGGCAGTGCAGTTTGG
TTCAGATCTTAATTGTGTGAAGATAGGCTTTAAAATCTTAGGGTATTGTGTTTGTAACAC
TGATATTTAGTGGAATATACTTTAGGAGAGTCTGCTACAGGGGTTTTGTATGCTTTTTTC
ATGTCGAAAGAGATTTTCCAACACTTGGTGTGGAAATTCACTTGGTGAGAAATAGGCACT
TCTAGAAAACTCCTGAAAAACAATTACTTTTCTTGATCTGCAGACCTGTGTACAGTACAG
GTGCCATTACGTTATGGCAACTTGATTAGCCCTGTGTGTGCATTTCTAGCCCTATTCATT
TGTTCCTCCCCTACGCCTTTCCATTTCCAGCTCCATTTTGTAGACTCGAAGTTCACGAAG
GGAAAGAATGAGGAGGAAAGAAGTGACGTGAGCGTCAGTTTCCTAAACAGTATAGTTGGC
TGAGAAGAGCAGCCCCTGCTTATGACAAGGACAGAAGCTCACTGCTCAACTTTCTTTCCC
GTCTCTTCCTGACTATAAACACCAGGGTGAATAGATGATTAACAGTAAGCAGTGGCTTCC
ATATCACTAGCTCTTGTCCTATACACTCTGCTCCAACCAGACTGCCCTGTGCTGGGCCCC
GGCCCTGCCACATTCCTTCACTGCTGCTTTCTGTAGCCAAGTGCCCTCTGCCTGGAAGCC
TCCCTGACACTTCTCCCTGCCAGATGCACTTCTTCAAGGCCATTCATTGACCTCCATCTG
CTGCACCCTTGCCAAAACTTTAAGAAGGGATGAATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               473-574, - strand, RNAz p=0.998946

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               473-574, - strand, RNAz p=0.998946

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               483-615, - strand, RNAmicro p=0.999925

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               483-615, - strand, RNAmicro p=0.999925

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               238-688, gnl|bosTau2|chr13 (30210735-30210278)
               

               
               238-688, gnl|Hg17|chr20 (5474812-5474353)
               


               
               716-936, gnl|bosTau2|chr13 (30210001-30209774)
               

               
               716-936, gnl|Hg17|chr20 (5474303-5474087)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               238-688, gnl|bosTau2|chr13 (30210735-30210278)
               

               
               238-688, gnl|Hg17|chr20 (5474812-5474353)
               


               
               716-936, gnl|bosTau2|chr13 (30210001-30209774)
               

               
               716-936, gnl|Hg17|chr20 (5474303-5474087)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.20816)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               cbl (0.114797)

	238-688, gnl\|bosTau2\|chr13 (30210735-30210278)
	238-688, gnl\|Hg17\|chr20 (5474812-5474353)

	716-936, gnl\|bosTau2\|chr13 (30210001-30209774)
	716-936, gnl\|Hg17\|chr20 (5474303-5474087)