Ss1.1-Pig4-TMW8044E18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTCGGGGATCAGTTTCTTTGTCATGTAGCCAAGACTGGAGAAACAATGATTCAGTGG TCCCAATTTAAAGGCTATTTTATTTTCAAACTGGAGAAAGTGATGGATGATTTCAGAACT TCAGCTCCTGAACCAAGAGGTCCTCCTAACCCTAATGTCGAATATATTCCTTTTGATGAA ATGAAGGAAAGAATACTGAAAATTGTCACTGGATTTAATGGTATACCTTTTACTATTCAG CGACTATGTGAATTGCTAACAGATCCAAGGAGAAACTATACAGGAACAGACAAATTTCTC AGAGGAGTAGAAAAGAATGTGATGGTTGTTAGCTGTGTTTATCCTTCTTCAGAGAAGAAC AATTCCAATAGTTTAAATCGAATGAATGGTGTTATGTTTCCTGGAAATTCACCAAGTTAC ACTGACAGGTCTAATATAAATGGGCCTGGGACACCGAGGCCACTTAATCGACCAAAGGTT TCTTTGTCAGTCCCCATGACAACAAATGGCTTGCCTGAGAGCACAGACAGCAAAGAATCA AACTTAAAGCAAAATGAGGACAAAAATCACAGTGACTCTTCAACATCAGAATCAGAAGGT TCCTCAGTGAGCCCTATAAAAAACAAACATCCAGATGAAGATGCTGTGGAAGCTGAAGGG CATGAGGTAAAAAGACTCAGGTTTGACAAAGAAAGTGAAGTCAGAGAGATGGCCAGTCAG ACATCCTCCAGTGAAATTTCTTCAGATATGGTAGAAGAAACAGAAGCTCCGTCTTCATCT CAGAATAAAGACAAAGAAAGTAGTTGTACCAGGCAGCACTGTACAGAAGAGGATGAAGAA GAGGATGAAGAGGAAGAAGAAGAGTCTTTTATGACATCAAGAGAAATGATCCCAGAAAGA AAAAATCAAGAAAAAGAATCTGATGATGCCTTAACTGTGAATGAAGAGACTTCTGAGGAA AATAATCAAATGGAGGAATCTGATCTGACTCAAGTTGAGAGAGATTTACATTCTGAAGGT AGTGAAAATACAGGCCCTGTAAGTAGTGGTTCCGATTGCCATGAAACAGAAGAATTAGTA GGATCCAATTCCAGTAAAACTGGGGAGATTCTCTCAGAATCAACCATGGAAAATGACGAA GCCACAGAAGTCACAGATGAACCAATGGAGCAAGACTAACTGTTTAGAAACATTTAGATG CAGTATTTTACATACAGTTCTGGTTTTACACTGTATAAAACTTTTATGTAATAAAGTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTCGGGGATCAGTTTCTTTGTCATGTAGCCAAGACTGGAGAAACAATGATTCAGTGG TCCCAATTTAAAGGCTATTTTATTTTCAAACTGGAGAAAGTGATGGATGATTTCAGAACT TCAGCTCCTGAACCAAGAGGTCCTCCTAACCCTAATGTCGAATATATTCCTTTTGATGAA ATGAAGGAAAGAATACTGAAAATTGTCACTGGATTTAATGGTATACCTTTTACTATTCAG CGACTATGTGAATTGCTAACAGATCCAAGGAGAAACTATACAGGAACAGACAAATTTCTC AGAGGAGTAGAAAAGAATGTGATGGTTGTTAGCTGTGTTTATCCTTCTTCAGAGAAGAAC AATTCCAATAGTTTAAATCGAATGAATGGTGTTATGTTTCCTGGAAATTCACCAAGTTAC ACTGACAGGTCTAATATAAATGGGCCTGGGACACCGAGGCCACTTAATCGACCAAAGGTT TCTTTGTCAGTCCCCATGACAACAAATGGCTTGCCTGAGAGCACAGACAGCAAAGAATCA AACTTAAAGCAAAATGAGGACAAAAATCACAGTGACTCTTCAACATCAGAATCAGAAGGT TCCTCAGTGAGCCCTATAAAAAACAAACATCCAGATGAAGATGCTGTGGAAGCTGAAGGG CATGAGGTAAAAAGACTCAGGTTTGACAAAGAAAGTGAAGTCAGAGAGATGGCCAGTCAG ACATCCTCCAGTGAAATTTCTTCAGATATGGTAGAAGAAACAGAAGCTCCGTCTTCATCT CAGAATAAAGACAAAGAAAGTAGTTGTACCAGGCAGCACTGTACAGAAGAGGATGAAGAA GAGGATGAAGAGGAAGAAGAAGAGTCTTTTATGACATCAAGAGAAATGATCCCAGAAAGA AAAAATCAAGAAAAAGAATCTGATGATGCCTTAACTGTGAATGAAGAGACTTCTGAGGAA AATAATCAAATGGAGGAATCTGATCTGACTCAAGTTGAGAGAGATTTACATTCTGAAGGT AGTGAAAATACAGGCCCTGTAAGTAGTGGTTCCGATTGCCATGAAACAGAAGAATTAGTA GGATCCAATTCCAGTAAAACTGGGGAGATTCTCTCAGAATCAACCATGGAAAATGACGAA GCCACAGAAGTCACAGATGAACCAATGGAGCAAGACTAACTGTTTAGAAACATTTAGATG CAGTATTTTACATACAGTTCTGGTTTTACACTGTATAAAACTTTTATGTAATAAAGTGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 559-715, - strand, RNAz p=0.803281 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 559-715, - strand, RNAz p=0.803281 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 51-265, gnl|bosTau2|chr22 (21120715-21120929) | |
| 51-265, gnl|canFam2|chr20 (22133101-22132912) | |
| 51-265, gnl|canFam2|chr20 (22132931-22133093) | |
| 51-265, gnl|danRer3|chr23 (7116855-7116693) | |
| 51-265, gnl|danRer3|chr6 (26500899-26501083) | |
| 51-265, gnl|dasNov1|scaffold_120622 (145-334) | |
| 51-265, gnl|dasNov1|scaffold_53873 (2066-2222) | |
| 51-265, gnl|echTel1|scaffold_291987 (6046-5868) | |
| 51-265, gnl|echTel1|scaffold_291987 (5881-6047) | |
| 51-265, gnl|fr1|chrUn (122455463-122455652) | |
| 51-265, gnl|fr1|chrUn (122455633-122455471) | |
| 51-265, gnl|galGal2|chr12 (16469613-16469798) | |
| 51-265, gnl|galGal2|chr12 (16469783-16469621) | |
| 51-265, gnl|hg17|chr3 (73179020-73179209) | |
| 51-265, gnl|Hg17|chr3 (73179027-73179241) | |
| 51-265, gnl|hg17|chr5 (343162-343324) | |
| 51-265, gnl|loxAfr1|scaffold_103752 (1801-1990) | |
| 51-265, gnl|loxAfr1|scaffold_220346 (647-810) | |
| 51-265, gnl|mm7|chr6 (100942662-100942851) | |
| 51-265, gnl|Mm7|chr6 (100942669-100942874) | |
| 51-265, gnl|mm7|chrX (70619991-70619829) | |
| 51-265, gnl|monDom2|scaffold_5 (21114222-21114415) | |
| 51-265, gnl|monDom2|scaffold_5 (21114392-21114230) | |
| 51-265, gnl|oryCun1|scaffold_205788 (67891-68053) | |
| 51-265, gnl|oryCun1|scaffold_32129 (976-804) | |
| 51-265, gnl|panTro1|chr2 (75149667-75149856) | |
| 51-265, gnl|panTro1|chr4_random (30220847-30221009) | |
| 51-265, gnl|rheMac2|chr16 (30792675-30792513) | |
| 51-265, gnl|rheMac2|chr2 (63172569-63172380) | |
| 51-265, gnl|rn3|chr4 (135988121-135988310) | |
| 51-265, gnl|rn3|chr4 (135988290-135988139) | |
| 51-265, gnl|tetNig1|chr11 (9996420-9996241) | |
| 51-265, gnl|tetNig1|chr11 (9996251-9996413) | |
| 51-265, gnl|xenTro1|scaffold_441 (1030901-1031085) | |
| 51-265, gnl|xenTro1|scaffold_441 (1031069-1030907) | |
| 505-797, gnl|bosTau2|chr12 (11539044-11538762) | |
| 505-797, gnl|Hg17|chr3 (73195920-73196950) | |
| 505-797, gnl|Mm7|chrX (70620278-70620624) | |
| 932-1260, gnl|bosTau2|chr12 (11536380-11536061) | |
| 932-1260, gnl|Hg17|chr3 (73197307-73197645) | |
| 932-1260, gnl|Mm7|chrX (70620711-70621042) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 51-265, gnl|bosTau2|chr22 (21120715-21120929) | |
| 51-265, gnl|canFam2|chr20 (22133101-22132912) | |
| 51-265, gnl|canFam2|chr20 (22132931-22133093) | |
| 51-265, gnl|danRer3|chr23 (7116855-7116693) | |
| 51-265, gnl|danRer3|chr6 (26500899-26501083) | |
| 51-265, gnl|dasNov1|scaffold_120622 (145-334) | |
| 51-265, gnl|dasNov1|scaffold_53873 (2066-2222) | |
| 51-265, gnl|echTel1|scaffold_291987 (6046-5868) | |
| 51-265, gnl|echTel1|scaffold_291987 (5881-6047) | |
| 51-265, gnl|fr1|chrUn (122455463-122455652) | |
| 51-265, gnl|fr1|chrUn (122455633-122455471) | |
| 51-265, gnl|galGal2|chr12 (16469613-16469798) | |
| 51-265, gnl|galGal2|chr12 (16469783-16469621) | |
| 51-265, gnl|hg17|chr3 (73179020-73179209) | |
| 51-265, gnl|Hg17|chr3 (73179027-73179241) | |
| 51-265, gnl|hg17|chr5 (343162-343324) | |
| 51-265, gnl|loxAfr1|scaffold_103752 (1801-1990) | |
| 51-265, gnl|loxAfr1|scaffold_220346 (647-810) | |
| 51-265, gnl|mm7|chr6 (100942662-100942851) | |
| 51-265, gnl|Mm7|chr6 (100942669-100942874) | |
| 51-265, gnl|mm7|chrX (70619991-70619829) | |
| 51-265, gnl|monDom2|scaffold_5 (21114222-21114415) | |
| 51-265, gnl|monDom2|scaffold_5 (21114392-21114230) | |
| 51-265, gnl|oryCun1|scaffold_205788 (67891-68053) | |
| 51-265, gnl|oryCun1|scaffold_32129 (976-804) | |
| 51-265, gnl|panTro1|chr2 (75149667-75149856) | |
| 51-265, gnl|panTro1|chr4_random (30220847-30221009) | |
| 51-265, gnl|rheMac2|chr16 (30792675-30792513) | |
| 51-265, gnl|rheMac2|chr2 (63172569-63172380) | |
| 51-265, gnl|rn3|chr4 (135988121-135988310) | |
| 51-265, gnl|rn3|chr4 (135988290-135988139) | |
| 51-265, gnl|tetNig1|chr11 (9996420-9996241) | |
| 51-265, gnl|tetNig1|chr11 (9996251-9996413) | |
| 51-265, gnl|xenTro1|scaffold_441 (1030901-1031085) | |
| 51-265, gnl|xenTro1|scaffold_441 (1031069-1030907) | |
| 505-797, gnl|bosTau2|chr12 (11539044-11538762) | |
| 505-797, gnl|Hg17|chr3 (73195920-73196950) | |
| 505-797, gnl|Mm7|chrX (70620278-70620624) | |
| 932-1260, gnl|bosTau2|chr12 (11536380-11536061) | |
| 932-1260, gnl|Hg17|chr3 (73197307-73197645) | |
| 932-1260, gnl|Mm7|chrX (70620711-70621042) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ece (0.229305) | |
| nco (0.161734) | |
| fat (0.147427) | |
| ute (0.132784) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| nco (0.161734) | |
| fat (0.147427) | |
| ute (0.132784) | |
| cty (0.10408) |