Ss1.1-Pig4-TMW8044E24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGTGTACATTTAATCTTTCTAACTTGAATTTTAAAAAAGATACTGGTATTTTGAAAAT GTAGACTATATGTATTCTTAATATCCTTTATAAGAGTGTGGAGACAGGCATTCCCTTGTA GCGCATGGGTTAAGGGTCCAGCGTTGTCACTGCAATAGCTGGGGTCGCTGCTGTGGTTCA GGGAACTTCTGCATGCTGTGGGTGTGGCAAAAACAAACAAACAAACAAACAAAAACAAAA CAAAAAAACAGAGTGTGGAGAAACTGTTTTGAGTTGCTGTTCCATTTAAAATTTAACTTT CACATCCAGCTATAGTCAGAAAATAATATCTTCTGGATGTAAACTTGATGGACTTTATTG AGATGTATCATTTATTTCATGAGTGTACCAGAAAATTAGAAACAGAAGACTGTCGAAATG TCTCTGTTACCAATTTATATTTGTAGGCAAAGTATATCCAATTATCTTGTTAATATGATA AATTGTGCTTTATCACTCTGAAAACTCAGGATACAGCTTATTAATATTGTGGGTTTTTCC AGTATGAAAGATAGATGCTACAGGTTTCATGTACACTAAAGCAAATTGGCTAAAACAAAT AGTATGTGTTGGAGAAAGTTAAAACCAGTTTTAAATTAAGGATGTGAAACTTGAGTATTT TTTTTTGTAATAAAAACTTGTGAGTTTTACACATTTTTTAATGTTCACAGCTTTTGCTCA TGAAAGTGCCAGACATGGTTTTGTGCTTTTAATGGATTTTTATTTATATACATTATTTTT GTTATTTTTACTTTGAGTGGAATGCCCATTAATGTAAATTATATTTATTTTTATACTTTA ATTTTAATTTTCACTAGTTTTGCTTCTAGGCAAAAGGCAAAATAAACTTTTCATCCGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGTGTACATTTAATCTTTCTAACTTGAATTTTAAAAAAGATACTGGTATTTTGAAAAT GTAGACTATATGTATTCTTAATATCCTTTATAAGAGTGTGGAGACAGGCATTCCCTTGTA GCGCATGGGTTAAGGGTCCAGCGTTGTCACTGCAATAGCTGGGGTCGCTGCTGTGGTTCA GGGAACTTCTGCATGCTGTGGGTGTGGCAAAAACAAACAAACAAACAAACAAAAACAAAA CAAAAAAACAGAGTGTGGAGAAACTGTTTTGAGTTGCTGTTCCATTTAAAATTTAACTTT CACATCCAGCTATAGTCAGAAAATAATATCTTCTGGATGTAAACTTGATGGACTTTATTG AGATGTATCATTTATTTCATGAGTGTACCAGAAAATTAGAAACAGAAGACTGTCGAAATG TCTCTGTTACCAATTTATATTTGTAGGCAAAGTATATCCAATTATCTTGTTAATATGATA AATTGTGCTTTATCACTCTGAAAACTCAGGATACAGCTTATTAATATTGTGGGTTTTTCC AGTATGAAAGATAGATGCTACAGGTTTCATGTACACTAAAGCAAATTGGCTAAAACAAAT AGTATGTGTTGGAGAAAGTTAAAACCAGTTTTAAATTAAGGATGTGAAACTTGAGTATTT TTTTTTGTAATAAAAACTTGTGAGTTTTACACATTTTTTAATGTTCACAGCTTTTGCTCA TGAAAGTGCCAGACATGGTTTTGTGCTTTTAATGGATTTTTATTTATATACATTATTTTT GTTATTTTTACTTTGAGTGGAATGCCCATTAATGTAAATTATATTTATTTTTATACTTTA ATTTTAATTTTCACTAGTTTTGCTTCTAGGCAAAAGGCAAAATAAACTTTTCATCCGCAA |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 3-111, gnl|bosTau2|chr25 (16834515-16834621) | |
| 3-111, gnl|canFam2|chr6 (28741158-28740747) | |
| 3-111, gnl|dasNov1|scaffold_145729 (4537-4915) | |
| 3-111, gnl|echTel1|scaffold_279277 (5940-5498) | |
| 3-111, gnl|hg17|chr16 (19471410-19471824) | |
| 3-111, gnl|Hg17|chr16 (19471485-19471586) | |
| 3-111, gnl|loxAfr1|scaffold_130846 (1748-1324) | |
| 3-111, gnl|mm7|chr7 (114658828-114659210) | |
| 3-111, gnl|Mm7|chr7 (114658890-114658980) | |
| 3-111, gnl|monDom2|scaffold_19 (39697459-39697882) | |
| 3-111, gnl|oryCun1|scaffold_147287 (7749-8153) | |
| 3-111, gnl|panTro1|chr18 (19934150-19934564) | |
| 3-111, gnl|rheMac2|chr20 (18526428-18526849) | |
| 3-111, gnl|rn3|chr1 (177100318-177100718) | |
| 268-894, gnl|bosTau2|chr25 (16834629-16835255) | |
| 268-894, gnl|canFam2|chr6 (28740346-28740746) | |
| 268-894, gnl|echTel1|scaffold_279277 (5107-5493) | |
| 268-894, gnl|Hg17|chr16 (19471594-19472220) | |
| 268-894, gnl|hg17|chr2 (214117226-214117612) | |
| 268-894, gnl|loxAfr1|scaffold_130846 (936-1319) | |
| 268-894, gnl|Mm7|chr7 (114658988-114659586) | |
| 268-894, gnl|monDom2|scaffold_19 (39698279-39697884) | |
| 268-894, gnl|oryCun1|scaffold_147287 (8543-8154) | |
| 268-894, gnl|panTro1|chr13 (104248313-104248699) | |
| 268-894, gnl|rheMac2|chr12 (77225108-77225494) | |
| 268-894, gnl|rn3|chr1 (177101113-177100719) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-111, gnl|bosTau2|chr25 (16834515-16834621) | |
| 3-111, gnl|canFam2|chr6 (28741158-28740747) | |
| 3-111, gnl|dasNov1|scaffold_145729 (4537-4915) | |
| 3-111, gnl|echTel1|scaffold_279277 (5940-5498) | |
| 3-111, gnl|hg17|chr16 (19471410-19471824) | |
| 3-111, gnl|Hg17|chr16 (19471485-19471586) | |
| 3-111, gnl|loxAfr1|scaffold_130846 (1748-1324) | |
| 3-111, gnl|mm7|chr7 (114658828-114659210) | |
| 3-111, gnl|Mm7|chr7 (114658890-114658980) | |
| 3-111, gnl|monDom2|scaffold_19 (39697459-39697882) | |
| 3-111, gnl|oryCun1|scaffold_147287 (7749-8153) | |
| 3-111, gnl|panTro1|chr18 (19934150-19934564) | |
| 3-111, gnl|rheMac2|chr20 (18526428-18526849) | |
| 3-111, gnl|rn3|chr1 (177100318-177100718) | |
| 268-894, gnl|bosTau2|chr25 (16834629-16835255) | |
| 268-894, gnl|canFam2|chr6 (28740346-28740746) | |
| 268-894, gnl|echTel1|scaffold_279277 (5107-5493) | |
| 268-894, gnl|Hg17|chr16 (19471594-19472220) | |
| 268-894, gnl|hg17|chr2 (214117226-214117612) | |
| 268-894, gnl|loxAfr1|scaffold_130846 (936-1319) | |
| 268-894, gnl|Mm7|chr7 (114658988-114659586) | |
| 268-894, gnl|monDom2|scaffold_19 (39698279-39697884) | |
| 268-894, gnl|oryCun1|scaffold_147287 (8543-8154) | |
| 268-894, gnl|panTro1|chr13 (104248313-104248699) | |
| 268-894, gnl|rheMac2|chr12 (77225108-77225494) | |
| 268-894, gnl|rn3|chr1 (177101113-177100719) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| tra (0.492368) | |
| liv (0.438853) | |
| elu (0.385356) | |
| thg (0.253582) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.492368) | |
| liv (0.438853) | |
| elu (0.385356) | |
| thg (0.253582) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| ecc (0.115035) | |
| eje (0.0988338) |