Non-Coding RNA Search

Ss1.1-Pig4-TMW8044F06.3

Sequence:


               
               GCTTGGCGTCACTATAGTGACCGGAAGCAGAGCCCCCGAGTTGGGTGGATATGTGCATCA
TGCTTAGGACCTGGGTTTGTCATCTCTGTAGTTTCCTTTACAGATCAACTGAGAATGGAC
CCGCCCCCTACCTCTTTAAATAGTTGTAGGCCACTTTTCTCCCTGCAACTTTGGAAAACA
AAAGACAAGGAGGGGGAAGTAGGTGTCATGCCACACTGCCTGTCACCAGTGGTTGTGGTT
AAGGCGGGTGGGCAGGCACGGATGACCTGCCAGCCCTTACACATCAATGGCCTTGGTAGG
TCTGAGAGCTGCCCCACTGGCCAGACTTCTCTCTGGCAGCAGAGCCAGCCTGGGGCTTGC
ATGTCAAGCCTGAGCAAGCTTAACGGGATGAAGCTGAGGCTTTCTCCCCACTGTGACTGG
AGTGCATGTTTACACCAGCACTTTTTCTGCACATGTATCTTCAATCCAACAAGGCCATTT
TTTATGCTGAGTAACAGGCCACCGAGCGGCTACTGCATTACACCCCCTCAGCAAGTGGCT
GCAGTCTCTTCTGCACCATTTTCCACACCAGACCTGCTTGGCACCACAGGGAGCTTTTTA
CCCCTGCACAATGACATTCCAACCACCACCAGCCAGAAGTTACAGCCAACCTTGCTGATT
GTCACAAGCAGGACCTTGGGTCCACTGGCACTGTCAGTGATGTAAGCCATTTCCTGGGGG
GGGAGGAGGAACATCCTCTCCACCCGTCTGCTTGGGCCAGTGCGAATGGCACTTCAGAGG
ACTCCCTCTGCACTTGGGGTCCATGAGCCAATGGGATATGCAAAGACGCGTAAACATTTC
AGGGCTGGTTTCTCTGTTCATATCCAATTCTGGTGCTTAGGAACAGGGACCTATGCTGAT
GCCCGAGGGCAAAAAGCCCCACTTCCTTTAAGGAAGGGGGCAGGCCTGACCCTAAAGCCC
AGTAAGGGGCACCCCTAGGCTTTTTGTTTTTCTTGCTTTTATTCCCGTTTTTTGTTGGCC
TTGTGCTGGGTTTGTTTACAAAAGATGTATTTTGTTTAACCAAATATTAAAAATGGAACT
CTGTACATAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTGGCGTCACTATAGTGACCGGAAGCAGAGCCCCCGAGTTGGGTGGATATGTGCATCA
TGCTTAGGACCTGGGTTTGTCATCTCTGTAGTTTCCTTTACAGATCAACTGAGAATGGAC
CCGCCCCCTACCTCTTTAAATAGTTGTAGGCCACTTTTCTCCCTGCAACTTTGGAAAACA
AAAGACAAGGAGGGGGAAGTAGGTGTCATGCCACACTGCCTGTCACCAGTGGTTGTGGTT
AAGGCGGGTGGGCAGGCACGGATGACCTGCCAGCCCTTACACATCAATGGCCTTGGTAGG
TCTGAGAGCTGCCCCACTGGCCAGACTTCTCTCTGGCAGCAGAGCCAGCCTGGGGCTTGC
ATGTCAAGCCTGAGCAAGCTTAACGGGATGAAGCTGAGGCTTTCTCCCCACTGTGACTGG
AGTGCATGTTTACACCAGCACTTTTTCTGCACATGTATCTTCAATCCAACAAGGCCATTT
TTTATGCTGAGTAACAGGCCACCGAGCGGCTACTGCATTACACCCCCTCAGCAAGTGGCT
GCAGTCTCTTCTGCACCATTTTCCACACCAGACCTGCTTGGCACCACAGGGAGCTTTTTA
CCCCTGCACAATGACATTCCAACCACCACCAGCCAGAAGTTACAGCCAACCTTGCTGATT
GTCACAAGCAGGACCTTGGGTCCACTGGCACTGTCAGTGATGTAAGCCATTTCCTGGGGG
GGGAGGAGGAACATCCTCTCCACCCGTCTGCTTGGGCCAGTGCGAATGGCACTTCAGAGG
ACTCCCTCTGCACTTGGGGTCCATGAGCCAATGGGATATGCAAAGACGCGTAAACATTTC
AGGGCTGGTTTCTCTGTTCATATCCAATTCTGGTGCTTAGGAACAGGGACCTATGCTGAT
GCCCGAGGGCAAAAAGCCCCACTTCCTTTAAGGAAGGGGGCAGGCCTGACCCTAAAGCCC
AGTAAGGGGCACCCCTAGGCTTTTTGTTTTTCTTGCTTTTATTCCCGTTTTTTGTTGGCC
TTGTGCTGGGTTTGTTTACAAAAGATGTATTTTGTTTAACCAAATATTAAAAATGGAACT
CTGTACATAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55661215|ref|XP_530391.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55661215|ref|XP_530391.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               193-420, - strand, RNAz p=0.597198
               

               
               654-1010, + strand, RNAz p=0.994999

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-420, - strand, RNAz p=0.597198
               

               
               654-1010, + strand, RNAz p=0.994999

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014876, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014876, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1078, gnl|bosTau2|chr5 (67848812-67847741)
               

               
               1-1078, gnl|Hg17|chr22 (37407206-37406133)
               

               
               1-1078, gnl|Mm7|chr15 (79759386-79758390)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1078, gnl|bosTau2|chr5 (67848812-67847741)
               

               
               1-1078, gnl|Hg17|chr22 (37407206-37406133)
               

               
               1-1078, gnl|Mm7|chr15 (79759386-79758390)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fli (0.405762)
               

               
               pla (0.267344)
               

               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.405762)
               

               
               pla (0.267344)
               

               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

	193-420, - strand, RNAz p=0.597198
	654-1010, + strand, RNAz p=0.994999

	1-1078, gnl\|bosTau2\|chr5 (67848812-67847741)
	1-1078, gnl\|Hg17\|chr22 (37407206-37406133)
	1-1078, gnl\|Mm7\|chr15 (79759386-79758390)

	fli (0.405762)
	pla (0.267344)
	cty (0.20816)
	fty (0.17584)
	cki (0.165235)
	cli (0.152812)
	nca (0.136874)
	eru (0.120048)
	nbm (0.0993246)