Ss1.1-Pig4-TMW8044F16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTATCACCAGGCATCTGGGCGGAGATGGACACGCGGAGCAAGAACTTCAGCGCCTGCCT GGAGCTCGGCGAGTCCCTGCTGCAGCGGCAGCACCAGGCTTCAGACGAGATCAGGGAGAA ACTGCAGCAGGTGGTGTCCAAGAAGAAGGAGATCGATGAGAAGTGGAAGGCCCGCTCTGA TCGGCTCAGCATGTTGCTGGAAGTGTGCCAGTTCTCTCGGGATGCCTCTGTGGCCGAAGC ATGGCTGATCGCCCAGGAGCCCTACCTGTCCAGCCGGGACTTTGGACACACAGTGGACAG TGTGGAAAAGCTCATCAAGAGGCACGAGGCTTTCGAGAAGTCCACGGCCAGCTGGGAACC GCGCTTTGCTGCCCTGGAGAAGCCCACCACGCTTGAGCTCAAAGAACGCCAGACCCCAGA GAGACCCAAGGAGGATGCTGGGCCTCAAGAGGAGGAAGGCGAGACAGCAGGGGAGGCTCC CCGAGGTCCCCACCGAGCAGCCACCGAGAGAACGTCCCCGGTCAGTTCCCTGTCCCATTT GTCTAGTTCCTGGGAGTCGTTGCTGCCAGAGCCCGCTCATCCCTACTAGGCTCCGCAGGG CAGAAGGCCAGGACGGGCACGTGCCGCCCCCGCCCCTGAGGCCCCTTCAGCCAGTCTTCC TTTTTACCGAGCTTTTCTTCATTCCTGGAATAATTGCCCTCGTCCCTTCAACCCAGAAGA AACTGACACGCCAGCCTACTGACATGACTCTCTTAGTTTGGTTTTATCTGGTCTAATAAA TTTTATTGTATAAAAATACATCACCCTCTACATCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTATCACCAGGCATCTGGGCGGAGATGGACACGCGGAGCAAGAACTTCAGCGCCTGCCT GGAGCTCGGCGAGTCCCTGCTGCAGCGGCAGCACCAGGCTTCAGACGAGATCAGGGAGAA ACTGCAGCAGGTGGTGTCCAAGAAGAAGGAGATCGATGAGAAGTGGAAGGCCCGCTCTGA TCGGCTCAGCATGTTGCTGGAAGTGTGCCAGTTCTCTCGGGATGCCTCTGTGGCCGAAGC ATGGCTGATCGCCCAGGAGCCCTACCTGTCCAGCCGGGACTTTGGACACACAGTGGACAG TGTGGAAAAGCTCATCAAGAGGCACGAGGCTTTCGAGAAGTCCACGGCCAGCTGGGAACC GCGCTTTGCTGCCCTGGAGAAGCCCACCACGCTTGAGCTCAAAGAACGCCAGACCCCAGA GAGACCCAAGGAGGATGCTGGGCCTCAAGAGGAGGAAGGCGAGACAGCAGGGGAGGCTCC CCGAGGTCCCCACCGAGCAGCCACCGAGAGAACGTCCCCGGTCAGTTCCCTGTCCCATTT GTCTAGTTCCTGGGAGTCGTTGCTGCCAGAGCCCGCTCATCCCTACTAGGCTCCGCAGGG CAGAAGGCCAGGACGGGCACGTGCCGCCCCCGCCCCTGAGGCCCCTTCAGCCAGTCTTCC TTTTTACCGAGCTTTTCTTCATTCCTGGAATAATTGCCCTCGTCCCTTCAACCCAGAAGA AACTGACACGCCAGCCTACTGACATGACTCTCTTAGTTTGGTTTTATCTGGTCTAATAAA TTTTATTGTATAAAAATACATCACCCTCTACATCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 561-672, - strand, RNAz p=0.591642 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 561-672, - strand, RNAz p=0.591642 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-109, gnl|bosTau2|chr10 (52218363-52218254) | |
| 1-109, gnl|canFam2|chr8 (42202002-42202173) | |
| 1-109, gnl|danRer3|chr17 (43636791-43636937) | |
| 1-109, gnl|dasNov1|scaffold_12501 (7319-7469) | |
| 1-109, gnl|echTel1|scaffold_317243 (37201-37053) | |
| 1-109, gnl|fr1|chrUn (130478714-130478869) | |
| 1-109, gnl|galGal2|chr3 (2621782-2621926) | |
| 1-109, gnl|hg17|chr14 (64306054-64306207) | |
| 1-109, gnl|Hg17|chr14 (64306170-64306061) | |
| 1-109, gnl|loxAfr1|scaffold_129995 (2155-2002) | |
| 1-109, gnl|mm7|chr12 (74559004-74559153) | |
| 1-109, gnl|Mm7|chr12 (74559117-74559008) | |
| 1-109, gnl|monDom2|scaffold_8 (78528875-78529033) | |
| 1-109, gnl|oryCun1|scaffold_75578 (1524-1674) | |
| 1-109, gnl|panTro1|chr15 (63875326-63875476) | |
| 1-109, gnl|rheMac2|chr7 (127768656-127768806) | |
| 1-109, gnl|rn3|chr6 (99200561-99200710) | |
| 1-109, gnl|tetNig1|chr10 (10336512-10336667) | |
| 1-109, gnl|xenTro1|scaffold_234 (979727-979876) | |
| 195-399, gnl|bosTau2|chr10 (52217116-52216913) | |
| 195-399, gnl|canFam2|chr8 (42200466-42200679) | |
| 195-399, gnl|danRer3|chr17 (43636358-43636571) | |
| 195-399, gnl|dasNov1|scaffold_12501 (5859-6072) | |
| 195-399, gnl|echTel1|scaffold_317243 (38328-38115) | |
| 195-399, gnl|fr1|chrUn (130478075-130478276) | |
| 195-399, gnl|galGal2|chr3 (2619296-2619497) | |
| 195-399, gnl|hg17|chr14 (64304133-64304346) | |
| 195-399, gnl|Hg17|chr14 (64304330-64304127) | |
| 195-399, gnl|loxAfr1|scaffold_1532 (157104-157318) | |
| 195-399, gnl|mm7|chr12 (74557278-74557490) | |
| 195-399, gnl|Mm7|chr12 (74557475-74557273) | |
| 195-399, gnl|monDom2|scaffold_8 (78527473-78527686) | |
| 195-399, gnl|oryCun1|scaffold_199733 (98555-98766) | |
| 195-399, gnl|panTro1|chr15 (63873176-63873389) | |
| 195-399, gnl|rheMac2|chr7 (127766653-127766866) | |
| 195-399, gnl|rn3|chr6 (99198759-99198971) | |
| 195-399, gnl|tetNig1|chr10 (10335899-10336100) | |
| 195-399, gnl|xenTro1|scaffold_234 (978227-978437) | |
| 441-814, gnl|bosTau2|chr10 (52216112-52215744) | |
| 441-814, gnl|Hg17|chr14 (64303273-64302883) | |
| 441-814, gnl|Mm7|chr12 (74556487-74556097) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-109, gnl|bosTau2|chr10 (52218363-52218254) | |
| 1-109, gnl|canFam2|chr8 (42202002-42202173) | |
| 1-109, gnl|danRer3|chr17 (43636791-43636937) | |
| 1-109, gnl|dasNov1|scaffold_12501 (7319-7469) | |
| 1-109, gnl|echTel1|scaffold_317243 (37201-37053) | |
| 1-109, gnl|fr1|chrUn (130478714-130478869) | |
| 1-109, gnl|galGal2|chr3 (2621782-2621926) | |
| 1-109, gnl|hg17|chr14 (64306054-64306207) | |
| 1-109, gnl|Hg17|chr14 (64306170-64306061) | |
| 1-109, gnl|loxAfr1|scaffold_129995 (2155-2002) | |
| 1-109, gnl|mm7|chr12 (74559004-74559153) | |
| 1-109, gnl|Mm7|chr12 (74559117-74559008) | |
| 1-109, gnl|monDom2|scaffold_8 (78528875-78529033) | |
| 1-109, gnl|oryCun1|scaffold_75578 (1524-1674) | |
| 1-109, gnl|panTro1|chr15 (63875326-63875476) | |
| 1-109, gnl|rheMac2|chr7 (127768656-127768806) | |
| 1-109, gnl|rn3|chr6 (99200561-99200710) | |
| 1-109, gnl|tetNig1|chr10 (10336512-10336667) | |
| 1-109, gnl|xenTro1|scaffold_234 (979727-979876) | |
| 195-399, gnl|bosTau2|chr10 (52217116-52216913) | |
| 195-399, gnl|canFam2|chr8 (42200466-42200679) | |
| 195-399, gnl|danRer3|chr17 (43636358-43636571) | |
| 195-399, gnl|dasNov1|scaffold_12501 (5859-6072) | |
| 195-399, gnl|echTel1|scaffold_317243 (38328-38115) | |
| 195-399, gnl|fr1|chrUn (130478075-130478276) | |
| 195-399, gnl|galGal2|chr3 (2619296-2619497) | |
| 195-399, gnl|hg17|chr14 (64304133-64304346) | |
| 195-399, gnl|Hg17|chr14 (64304330-64304127) | |
| 195-399, gnl|loxAfr1|scaffold_1532 (157104-157318) | |
| 195-399, gnl|mm7|chr12 (74557278-74557490) | |
| 195-399, gnl|Mm7|chr12 (74557475-74557273) | |
| 195-399, gnl|monDom2|scaffold_8 (78527473-78527686) | |
| 195-399, gnl|oryCun1|scaffold_199733 (98555-98766) | |
| 195-399, gnl|panTro1|chr15 (63873176-63873389) | |
| 195-399, gnl|rheMac2|chr7 (127766653-127766866) | |
| 195-399, gnl|rn3|chr6 (99198759-99198971) | |
| 195-399, gnl|tetNig1|chr10 (10335899-10336100) | |
| 195-399, gnl|xenTro1|scaffold_234 (978227-978437) | |
| 441-814, gnl|bosTau2|chr10 (52216112-52215744) | |
| 441-814, gnl|Hg17|chr14 (64303273-64302883) | |
| 441-814, gnl|Mm7|chr12 (74556487-74556097) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.496623) | |
| ese (0.126502) |