Non-Coding RNA Search

Ss1.1-Pig4-TMW8044F17.3

Sequence:


               
               AGACAACACCAGAAAAAATGCAAGTCTACATCTCACCCAAGGACCCAGTTATATCTGTGA
ATCCCTCCACAAGCCTACAAGAAGGTGACTCCATGATGATGACATGTACCAGTGAAGGTC
TACCAGCTCCACAGATTTCCTGGAGCAAGAAATTAGATAATGGAGATCAACAGCTCCTTT
CTGGGAATGCAACTCTCACTTTAATTGCTATGAGGATGGAAGATTCTGGAATTTACGTGT
GCGAGGGAGTTAATCCGGTTGGGACAAACAGAAAAGAGGTGGAATTAACTGTTCAAGTTG
CTCCCAGGGATACGACCATCTCCGTCAACCCCTCCTCCACCCTGGAGGAGGGCAGTTCTG
TGAACATGACCTGCTCTAGTGATGGCTTTCCAGCTCCGAAAATCCTCTGGAGCAAGAAGC
TGAGGGATGGGAATCTAGAGCCTCTTTCTGAGAATACAACTCTCACCTTGACATCTACAA
AAATGGAAGATTCTGGTATTTATGTGTGTGAAGGGATTAACCAGGCTGGAATAAACAGAA
AAGAAGTTGAATTAATTATCCAAGCTGCTCCAAAAGATCTACAACTTACAGCTTTTCCTT
CTGAGAGCGTCAAGGAAGGGGACACTGTCATTATCTCCTGTACATGTGGAAATGTCCCCC
CGACTTTGATAATCCTGAAGAAAAAAGCAGAGACAGGCGACACGGTGCTAAAGTCTACCG
ATGGTGCATATACCATCCACAGGGCCCGGCTAGCGGATGCAGGTGTATACGAATGTGAAT
CCAAGAATGAAATTGGCTTGCAATTAAGAAGTATAACGCTTGACGTGAAAGGAAGAGAAA
GTAACAAGGACTATTTTTCTTCTGAACTTCTCGTGCTCTATTGTGCATCCTCCTTAATAA
TACCTGCCATCGGGGTGATTATTTACTTTGCTAGAAAAGCCAACATGAGAGGGTCATATA
GTCTTGTAGACGCTCAAAAATCAAAAGTGTAGCTGATGTTTGAAGTGTTCAACCAGAGAC
ATTATTTATCAGTTCAAATCCTCAATACTGCTCATCATTCCACAAGGAAAACAACAAGCT
GGGAGTCCAGACTTTGAATGCAGTGAACTCTTGGAAAGACATGGCTGCCTATGCCCTTGC
GGTGTGCACGAAGCCAAAGGAAAACGGCTTTCTCAAAAATAGGCACTACCCCTGAGATAT
GGTGACTGGGGTGGTGTCATGAAGTGTATGTACAATAACGTGATTTGTATATATGTAAAA
TAAAATTATGCCATAGGAAGATCGCCTGCAATATCAGCCCTCCATAGTCACATTTCTAAA
ATTATCAGTGTTGCTTGGACTGATCGTTATAACTTAATGCATCTTAATATGACTGGCACT
TTTTAATATTTTATGTCATCTTTTTAATATTTTGTTACGACTTTTCAATATTTTATTTCC
TTTAACAATATTTGATTCCTATAAAGGTCATGGACAACAATTTCATGTTTTGTAAAGATG
CCAGGGTTTTAGATTGTTACAGGCAAATGATAAACCAAGAAAGAACTGGGTTGACTTTCA
GGTACTAAGCACTTCAACCTATGGTGTAATGGTTGACTGGATTTCTCCGGATGGTACTGC
CATGGTACGGAGTTTTTTTATGATGTTGTTTGTTCATCAGACTCTTGTGTAACTTTCTCT
ATGTGGTCTAAAAGTACAACCTCTTTCGATTTTCTTTTGTAAATGTTTAGGGTTTTTTTT
GTATAGTAAAGTGATAATTTCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACAACACCAGAAAAAATGCAAGTCTACATCTCACCCAAGGACCCAGTTATATCTGTGA
ATCCCTCCACAAGCCTACAAGAAGGTGACTCCATGATGATGACATGTACCAGTGAAGGTC
TACCAGCTCCACAGATTTCCTGGAGCAAGAAATTAGATAATGGAGATCAACAGCTCCTTT
CTGGGAATGCAACTCTCACTTTAATTGCTATGAGGATGGAAGATTCTGGAATTTACGTGT
GCGAGGGAGTTAATCCGGTTGGGACAAACAGAAAAGAGGTGGAATTAACTGTTCAAGTTG
CTCCCAGGGATACGACCATCTCCGTCAACCCCTCCTCCACCCTGGAGGAGGGCAGTTCTG
TGAACATGACCTGCTCTAGTGATGGCTTTCCAGCTCCGAAAATCCTCTGGAGCAAGAAGC
TGAGGGATGGGAATCTAGAGCCTCTTTCTGAGAATACAACTCTCACCTTGACATCTACAA
AAATGGAAGATTCTGGTATTTATGTGTGTGAAGGGATTAACCAGGCTGGAATAAACAGAA
AAGAAGTTGAATTAATTATCCAAGCTGCTCCAAAAGATCTACAACTTACAGCTTTTCCTT
CTGAGAGCGTCAAGGAAGGGGACACTGTCATTATCTCCTGTACATGTGGAAATGTCCCCC
CGACTTTGATAATCCTGAAGAAAAAAGCAGAGACAGGCGACACGGTGCTAAAGTCTACCG
ATGGTGCATATACCATCCACAGGGCCCGGCTAGCGGATGCAGGTGTATACGAATGTGAAT
CCAAGAATGAAATTGGCTTGCAATTAAGAAGTATAACGCTTGACGTGAAAGGAAGAGAAA
GTAACAAGGACTATTTTTCTTCTGAACTTCTCGTGCTCTATTGTGCATCCTCCTTAATAA
TACCTGCCATCGGGGTGATTATTTACTTTGCTAGAAAAGCCAACATGAGAGGGTCATATA
GTCTTGTAGACGCTCAAAAATCAAAAGTGTAGCTGATGTTTGAAGTGTTCAACCAGAGAC
ATTATTTATCAGTTCAAATCCTCAATACTGCTCATCATTCCACAAGGAAAACAACAAGCT
GGGAGTCCAGACTTTGAATGCAGTGAACTCTTGGAAAGACATGGCTGCCTATGCCCTTGC
GGTGTGCACGAAGCCAAAGGAAAACGGCTTTCTCAAAAATAGGCACTACCCCTGAGATAT
GGTGACTGGGGTGGTGTCATGAAGTGTATGTACAATAACGTGATTTGTATATATGTAAAA
TAAAATTATGCCATAGGAAGATCGCCTGCAATATCAGCCCTCCATAGTCACATTTCTAAA
ATTATCAGTGTTGCTTGGACTGATCGTTATAACTTAATGCATCTTAATATGACTGGCACT
TTTTAATATTTTATGTCATCTTTTTAATATTTTGTTACGACTTTTCAATATTTTATTTCC
TTTAACAATATTTGATTCCTATAAAGGTCATGGACAACAATTTCATGTTTTGTAAAGATG
CCAGGGTTTTAGATTGTTACAGGCAAATGATAAACCAAGAAAGAACTGGGTTGACTTTCA
GGTACTAAGCACTTCAACCTATGGTGTAATGGTTGACTGGATTTCTCCGGATGGTACTGC
CATGGTACGGAGTTTTTTTATGATGTTGTTTGTTCATCAGACTCTTGTGTAACTTTCTCT
ATGTGGTCTAAAAGTACAACCTCTTTCGATTTTCTTTTGTAAATGTTTAGGGTTTTTTTT
GTATAGTAAAGTGATAATTTCTGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47522704|ref|NP_999056.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47522704|ref|NP_999056.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               325-444, - strand, RNAz p=0.979052

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               325-444, - strand, RNAz p=0.979052

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               285-574, gnl|bosTau2|chr3 (38633664-38633376)
               

               
               285-574, gnl|Hg17|chr1 (100909983-100910271)
               

               
               285-574, gnl|Mm7|chr3 (115891075-115890787)
               


               
               830-1763, gnl|bosTau2|chr3 (38627192-38626308)
               

               
               830-1763, gnl|Hg17|chr1 (100915698-100916613)
               

               
               830-1763, gnl|Mm7|chr3 (115885952-115885053)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               285-574, gnl|bosTau2|chr3 (38633664-38633376)
               

               
               285-574, gnl|Hg17|chr1 (100909983-100910271)
               

               
               285-574, gnl|Mm7|chr3 (115891075-115890787)
               


               
               830-1763, gnl|bosTau2|chr3 (38627192-38626308)
               

               
               830-1763, gnl|Hg17|chr1 (100915698-100916613)
               

               
               830-1763, gnl|Mm7|chr3 (115885952-115885053)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               spl (2.86369)
               

               
               gul (0.355177)
               

               
               tbr (0.308356)
               

               
               pla (0.267344)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (2.86369)
               

               
               gul (0.355177)
               

               
               tbr (0.308356)
               

               
               pla (0.267344)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	285-574, gnl\|bosTau2\|chr3 (38633664-38633376)
	285-574, gnl\|Hg17\|chr1 (100909983-100910271)
	285-574, gnl\|Mm7\|chr3 (115891075-115890787)

	830-1763, gnl\|bosTau2\|chr3 (38627192-38626308)
	830-1763, gnl\|Hg17\|chr1 (100915698-100916613)
	830-1763, gnl\|Mm7\|chr3 (115885952-115885053)

	spl (2.86369)
	gul (0.355177)
	tbr (0.308356)
	pla (0.267344)
	ret (0.257467)
	sug (0.254582)
	jca (0.22792)
	hea (0.204499)
	fcc (0.197785)
	ldo (0.194005)
	nep (0.183925)
	eli (0.151814)
	liv (0.146284)
	lin (0.145603)
	pty (0.142714)
	lnt (0.142308)
	kid (0.129735)
	thg (0.126791)
	tra (0.123092)
	cty (0.10408)
	nbm (0.0993246)
	eje (0.0988338)